Wall clock time and date at job start Fri Apr 10 2020 18:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99878 * 2 1 4 4 H 1.48499 * 109.47153 * 240.00025 * 3 2 1 5 5 H 1.48502 * 109.46859 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46945 * 119.99936 * 3 2 1 7 7 C 1.37875 * 120.00197 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00212 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99876 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47248 * 179.97438 * 9 7 2 11 11 C 1.34774 * 120.00102 * 180.02562 * 10 9 7 12 12 O 1.21277 * 119.99832 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.99882 * 180.02562 * 11 10 9 14 14 N 1.46895 * 109.46942 * 179.97438 * 13 11 10 15 15 C 1.46850 * 111.00121 * 66.05036 * 14 13 11 16 16 C 1.53028 * 109.52769 * 185.83886 * 15 14 13 17 17 C 1.53121 * 109.27681 * 300.81801 * 16 15 14 18 18 C 1.53119 * 109.16108 * 57.65337 * 17 16 15 19 19 H 1.09001 * 109.50063 * 62.32507 * 18 17 16 20 20 N 1.46902 * 109.50677 * 182.40370 * 18 17 16 21 21 C 1.46902 * 110.99776 * 273.28081 * 20 18 17 22 22 C 1.53178 * 109.54186 * 274.20401 * 21 20 18 23 23 C 1.53097 * 109.15920 * 183.15628 * 22 21 20 24 24 O 1.42901 * 109.41653 * 57.61234 * 23 22 21 25 25 C 1.42908 * 114.09486 * 298.83872 * 24 23 22 26 26 C 1.53089 * 109.41760 * 61.15843 * 25 24 23 27 27 C 1.46848 * 111.00039 * 190.25429 * 14 13 11 28 28 H 0.97004 * 120.00087 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.46872 * 59.99974 * 9 7 2 30 30 H 1.09002 * 109.47065 * 300.00430 * 9 7 2 31 31 H 0.97006 * 119.99419 * 0.02562 * 10 9 7 32 32 H 1.09007 * 109.46932 * 60.00353 * 13 11 10 33 33 H 1.08995 * 109.46953 * 300.00286 * 13 11 10 34 34 H 1.09002 * 109.46074 * 65.81743 * 15 14 13 35 35 H 1.09001 * 109.45191 * 305.84828 * 15 14 13 36 36 H 1.09000 * 109.50681 * 180.87810 * 16 15 14 37 37 H 1.09003 * 109.53795 * 60.77418 * 16 15 14 38 38 H 1.08996 * 109.52451 * 297.75086 * 17 16 15 39 39 H 1.08999 * 109.52647 * 177.55708 * 17 16 15 40 40 H 1.00898 * 110.99566 * 37.23317 * 20 18 17 41 41 H 1.09004 * 109.61830 * 34.43126 * 21 20 18 42 42 H 1.09002 * 109.52438 * 303.05776 * 22 21 20 43 43 H 1.08997 * 109.52242 * 63.25050 * 22 21 20 44 44 H 1.09000 * 109.47765 * 177.59059 * 23 22 21 45 45 H 1.09001 * 109.48283 * 297.62300 * 23 22 21 46 46 H 1.09000 * 109.48035 * 301.17335 * 25 24 23 47 47 H 1.09001 * 109.48200 * 181.14110 * 25 24 23 48 48 H 1.08993 * 109.52533 * 182.48322 * 26 25 24 49 49 H 1.09006 * 109.52080 * 62.29676 * 26 25 24 50 50 H 1.09005 * 109.45774 * 54.15141 * 27 14 13 51 51 H 1.08999 * 109.46644 * 294.18366 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 7 2.2031 -3.6127 0.0015 11 6 1.7538 -4.8833 0.0019 12 8 0.5615 -5.1049 0.0019 13 6 2.7332 -6.0288 0.0022 14 7 1.9987 -7.3009 0.0032 15 6 1.2532 -7.4792 -1.2493 16 6 0.3886 -8.7383 -1.1552 17 6 1.2876 -9.9507 -0.8977 18 6 2.0887 -9.7187 0.3865 19 1 1.4049 -9.6279 1.2305 20 7 2.9961 -10.8521 0.6101 21 6 2.3215 -11.9291 1.3470 22 6 2.4222 -11.6615 2.8518 23 6 1.7862 -12.8275 3.6132 24 8 2.4406 -14.0450 3.2505 25 6 2.3389 -14.3711 1.8628 26 6 2.9970 -13.2671 1.0311 27 6 2.9040 -8.4311 0.2476 28 1 -0.4850 0.8401 -0.0004 29 1 0.6241 -2.5575 -0.8880 30 1 0.6247 -2.5563 0.8919 31 1 3.1568 -3.4353 0.0010 32 1 3.3598 -5.9707 0.8923 33 1 3.3598 -5.9712 -0.8878 34 1 1.9541 -7.5810 -2.0778 35 1 0.6147 -6.6120 -1.4183 36 1 -0.1528 -8.8789 -2.0908 37 1 -0.3224 -8.6319 -0.3358 38 1 1.9724 -10.0810 -1.7356 39 1 0.6722 -10.8436 -0.7867 40 1 3.3725 -11.1915 -0.2624 41 1 1.2726 -11.9720 1.0535 42 1 3.4705 -11.5694 3.1361 43 1 1.8958 -10.7382 3.0936 44 1 1.8930 -12.6629 4.6854 45 1 0.7283 -12.8937 3.3591 46 1 1.2882 -14.4575 1.5858 47 1 2.8438 -15.3184 1.6741 48 1 2.8818 -13.4921 -0.0291 49 1 4.0569 -13.2075 1.2786 50 1 3.4645 -8.2553 1.1658 51 1 3.5972 -8.5284 -0.5879 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880210705.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:17 Heat of formation + Delta-G solvation = -113.557121 kcal Electronic energy + Delta-G solvation = -27997.600157 eV Core-core repulsion = 24122.969973 eV Total energy + Delta-G solvation = -3874.630184 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.05799 -40.43904 -39.41006 -36.94326 -36.04749 -34.39338 -34.15328 -32.59150 -32.03922 -30.17937 -29.26751 -27.91272 -25.12355 -24.71688 -24.60349 -23.72941 -22.92206 -21.30035 -21.18053 -20.69702 -18.91233 -17.59727 -17.42859 -17.28715 -16.96142 -16.71355 -16.57519 -16.26624 -15.95551 -15.80936 -15.69411 -15.45009 -15.12796 -14.77760 -14.51017 -14.23000 -14.17895 -14.07266 -13.89144 -13.78164 -13.28574 -13.15622 -12.92626 -12.80779 -12.70999 -12.59532 -12.29548 -12.23931 -12.17850 -11.82724 -11.65414 -11.60997 -11.50755 -11.47148 -11.23712 -10.78549 -10.63083 -10.51618 -9.79088 -9.39741 -9.21708 -8.28808 -6.45596 1.42897 1.47096 1.55249 1.81695 2.24708 2.43093 2.88506 2.99413 3.05735 3.30407 3.72636 3.79397 3.87054 3.93493 4.00790 4.01665 4.07604 4.22013 4.29602 4.31267 4.33624 4.37350 4.47092 4.50025 4.58306 4.64567 4.70297 4.72694 4.74543 4.80097 4.89434 4.91291 5.03193 5.03618 5.11839 5.11966 5.15073 5.19425 5.25174 5.34863 5.35170 5.50019 5.71537 5.85537 5.98947 6.01710 6.23058 6.26492 6.49382 6.65627 6.96904 7.24071 7.55171 8.83048 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.028647 B = 0.001911 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.174403 B =14644.829606 C =14972.810207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.985 3.015 4 H -0.262 1.262 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.557 4.557 8 H 0.084 0.916 9 C 0.270 3.730 10 N -0.711 5.711 11 C 0.494 3.506 12 O -0.584 6.584 13 C 0.051 3.949 14 N -0.539 5.539 15 C 0.052 3.948 16 C -0.106 4.106 17 C -0.137 4.137 18 C 0.100 3.900 19 H 0.068 0.932 20 N -0.677 5.677 21 C 0.090 3.910 22 C -0.142 4.142 23 C 0.060 3.940 24 O -0.404 6.404 25 C 0.058 3.942 26 C -0.151 4.151 27 C 0.075 3.925 28 H 0.268 0.732 29 H -0.014 1.014 30 H -0.015 1.015 31 H 0.408 0.592 32 H 0.125 0.875 33 H 0.084 0.916 34 H 0.038 0.962 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.052 0.948 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.350 0.650 41 H 0.045 0.955 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.101 0.899 45 H 0.054 0.946 46 H 0.056 0.944 47 H 0.108 0.892 48 H 0.089 0.911 49 H 0.074 0.926 50 H 0.082 0.918 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.482 -28.799 -0.087 30.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.197 4.197 3 Si 0.808 3.192 4 H -0.186 1.186 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.595 4.595 8 H 0.102 0.898 9 C 0.147 3.853 10 N -0.362 5.362 11 C 0.281 3.719 12 O -0.464 6.464 13 C -0.079 4.079 14 N -0.265 5.265 15 C -0.076 4.076 16 C -0.145 4.145 17 C -0.176 4.176 18 C -0.011 4.011 19 H 0.087 0.913 20 N -0.308 5.308 21 C -0.020 4.020 22 C -0.180 4.180 23 C -0.017 4.017 24 O -0.323 6.323 25 C -0.019 4.019 26 C -0.189 4.189 27 C -0.053 4.053 28 H 0.077 0.923 29 H 0.003 0.997 30 H 0.003 0.997 31 H 0.243 0.757 32 H 0.143 0.857 33 H 0.102 0.898 34 H 0.056 0.944 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.170 0.830 41 H 0.063 0.937 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.119 0.881 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.126 0.874 48 H 0.107 0.893 49 H 0.093 0.907 50 H 0.100 0.900 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.542 -28.671 0.989 29.933 hybrid contribution -0.112 1.215 -1.461 1.904 sum 8.429 -27.456 -0.472 28.725 Atomic orbital electron populations 1.70139 1.08277 1.28590 1.49943 1.26087 0.95792 1.03955 0.93882 0.85201 0.77896 0.76573 0.79503 1.18634 1.21138 1.18649 1.21608 0.94330 0.90622 1.52917 0.89778 1.18480 0.88658 0.84343 0.93864 1.46195 1.11137 1.05535 1.73299 1.21350 0.90017 0.84727 0.75792 1.90610 1.19226 1.85173 1.51396 1.21897 0.93797 0.87234 1.05014 1.61395 1.27763 1.01070 1.36266 1.22164 0.96838 0.99236 0.89332 1.21424 0.97741 0.93448 1.01878 1.22233 0.99071 0.97770 0.98517 1.21402 0.92629 0.90197 0.96832 0.91330 1.60398 1.35915 1.08081 1.26435 1.21507 0.96237 0.90376 0.93898 1.22184 1.02222 0.98559 0.95035 1.22667 0.95565 0.83234 1.00261 1.87913 1.77063 1.41254 1.26068 1.22709 1.00450 0.98284 0.80426 1.22340 1.01266 0.93883 1.01372 1.21985 0.93126 0.88701 1.01476 0.92284 0.99651 0.99731 0.75680 0.85679 0.89808 0.94379 0.92441 0.90651 0.92910 0.90793 0.91154 0.83030 0.93739 0.91276 0.91570 0.88105 0.92757 0.92586 0.87385 0.89279 0.90685 0.89995 0.93748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.59 13.29 21.45 0.28 -56.31 16 2 C 0.00 0.13 5.46 84.65 0.46 0.60 16 3 Si 0.99 42.43 29.54 68.60 2.03 44.45 16 4 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 5 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 6 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 7 C -0.56 -30.46 9.28 25.60 0.24 -30.23 16 8 H 0.08 4.13 7.60 -2.91 -0.02 4.10 16 9 C 0.27 14.95 5.43 85.63 0.46 15.42 16 10 N -0.71 -30.13 5.55 -466.79 -2.59 -32.72 16 11 C 0.49 19.87 7.50 87.66 0.66 20.53 16 12 O -0.58 -29.12 14.35 -3.02 -0.04 -29.16 16 13 C 0.05 1.40 5.45 85.56 0.47 1.87 16 14 N -0.54 -14.66 4.39 -900.94 -3.96 -18.62 16 15 C 0.05 1.44 5.11 86.32 0.44 1.88 16 16 C -0.11 -2.41 6.09 30.64 0.19 -2.22 16 17 C -0.14 -2.24 5.25 30.67 0.16 -2.08 16 18 C 0.10 1.76 2.44 44.97 0.11 1.87 16 19 H 0.07 1.50 7.21 -2.39 -0.02 1.48 16 20 N -0.68 -9.44 6.07 -468.57 -2.84 -12.28 16 21 C 0.09 1.18 2.38 45.04 0.11 1.29 16 22 C -0.14 -2.16 5.62 30.69 0.17 -1.99 16 23 C 0.06 0.85 6.84 72.01 0.49 1.34 16 24 O -0.40 -6.71 10.77 -148.98 -1.60 -8.32 16 25 C 0.06 0.64 6.84 72.01 0.49 1.14 16 26 C -0.15 -1.54 5.40 30.69 0.17 -1.38 16 27 C 0.07 1.50 5.07 86.32 0.44 1.94 16 28 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 29 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 30 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 31 H 0.41 14.10 8.32 -92.70 -0.77 13.33 16 32 H 0.13 2.79 7.98 -2.38 -0.02 2.77 16 33 H 0.08 1.88 8.12 -2.39 -0.02 1.86 16 34 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.06 2.10 5.80 -2.39 -0.01 2.08 16 36 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.07 1.04 8.09 -2.39 -0.02 1.02 16 39 H 0.07 1.02 7.60 -2.39 -0.02 1.00 16 40 H 0.35 3.90 8.05 -89.70 -0.72 3.18 16 41 H 0.04 0.62 7.28 -2.38 -0.02 0.61 16 42 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.07 1.12 7.56 -2.39 -0.02 1.10 16 44 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 47 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 49 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 50 H 0.08 1.64 8.01 -2.38 -0.02 1.62 16 51 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -72.87 395.21 -4.25 -77.12 By element: Atomic # 1 Polarization: 26.43 SS G_CDS: -0.58 Total: 25.85 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: 5.06 Total: 9.98 kcal Atomic # 7 Polarization: -110.82 SS G_CDS: -9.11 Total: -119.93 kcal Atomic # 8 Polarization: -35.83 SS G_CDS: -1.65 Total: -37.48 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.45 kcal Total: -72.87 -4.25 -77.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880210705.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.434 kcal (2) G-P(sol) polarization free energy of solvation -72.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds