Wall clock time and date at job start Fri Apr 10 2020 18:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.50485 * 2 1 4 4 C 1.53123 * 109.49984 * 120.07726 * 2 1 3 5 5 C 1.53118 * 109.15585 * 177.59503 * 4 2 1 6 6 C 1.53036 * 109.28007 * 302.34276 * 5 4 2 7 7 H 1.08998 * 109.46728 * 299.16963 * 6 5 4 8 8 C 1.53004 * 109.46346 * 179.19722 * 6 5 4 9 9 N 1.46501 * 109.46728 * 184.95055 * 8 6 5 10 10 C 1.34781 * 119.99383 * 180.02562 * 9 8 6 11 11 O 1.21345 * 120.00442 * 359.97438 * 10 9 8 12 12 C 1.49460 * 119.99672 * 179.97438 * 10 9 8 13 13 O 1.21345 * 119.99886 * 359.97438 * 12 10 9 14 14 N 1.34769 * 119.99926 * 179.97438 * 12 10 9 15 15 C 1.46502 * 120.00159 * 180.02562 * 14 12 10 16 16 C 1.53004 * 109.47249 * 180.02562 * 15 14 12 17 17 C 1.52999 * 109.47153 * 179.97438 * 16 15 14 18 18 C 1.50699 * 109.46982 * 179.97438 * 17 16 15 19 19 H 1.07995 * 120.00213 * 0.02562 * 18 17 16 20 20 C 1.37882 * 119.99644 * 180.02562 * 18 17 16 21 21 N 1.31507 * 119.99962 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99838 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47121 * 60.00083 * 22 20 18 24 24 H 1.48502 * 109.46959 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46985 * 300.00279 * 22 20 18 26 26 N 1.46846 * 109.52162 * 59.18140 * 6 5 4 27 27 C 1.46846 * 111.19997 * 298.26076 * 26 6 5 28 28 H 1.09007 * 109.46955 * 299.92215 * 1 2 3 29 29 H 1.09002 * 109.46994 * 59.91752 * 1 2 3 30 30 H 1.08996 * 109.47470 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47069 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47101 * 300.07633 * 3 2 1 33 33 H 1.08996 * 109.47524 * 60.07582 * 3 2 1 34 34 H 1.08993 * 109.52379 * 57.69107 * 4 2 1 35 35 H 1.08997 * 109.57561 * 297.52739 * 4 2 1 36 36 H 1.09008 * 109.50062 * 182.40805 * 5 4 2 37 37 H 1.09002 * 109.53946 * 62.30558 * 5 4 2 38 38 H 1.08994 * 109.47246 * 304.94774 * 8 6 5 39 39 H 1.08994 * 109.46918 * 64.95070 * 8 6 5 40 40 H 0.96996 * 120.00586 * 359.97438 * 9 8 6 41 41 H 0.97008 * 120.00211 * 0.02562 * 14 12 10 42 42 H 1.08994 * 109.46924 * 300.00167 * 15 14 12 43 43 H 1.08994 * 109.46991 * 60.00310 * 15 14 12 44 44 H 1.09002 * 109.47071 * 300.00156 * 16 15 14 45 45 H 1.09004 * 109.46926 * 60.00165 * 16 15 14 46 46 H 1.08994 * 109.47102 * 300.00159 * 17 16 15 47 47 H 1.09004 * 109.46681 * 59.99847 * 17 16 15 48 48 H 0.97005 * 119.99868 * 179.97438 * 21 20 18 49 49 H 1.00904 * 111.00089 * 62.35801 * 26 6 5 50 50 H 1.08999 * 109.46373 * 181.76104 * 27 26 6 51 51 H 1.08998 * 109.45881 * 301.72191 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0409 1.4422 0.0000 4 6 2.0412 -0.7234 1.2490 5 6 3.5711 -0.7715 1.2110 6 6 4.0229 -1.4731 -0.0718 7 1 3.6374 -2.4926 -0.0834 8 6 5.5517 -1.5057 -0.1237 9 7 5.9848 -2.0702 -1.4044 10 6 7.2991 -2.1978 -1.6745 11 8 8.1236 -1.8446 -0.8572 12 6 7.7410 -2.7742 -2.9807 13 8 6.9165 -3.1278 -3.7978 14 7 9.0551 -2.9013 -3.2511 15 6 9.4884 -3.4658 -4.5317 16 6 11.0172 -3.4990 -4.5834 17 6 11.4695 -4.0892 -5.9205 18 6 12.9753 -4.1213 -5.9716 19 1 13.5520 -3.7576 -5.1340 20 6 13.6168 -4.6150 -7.0878 21 7 12.9146 -5.0574 -8.1079 22 14 15.4833 -4.6556 -7.1509 23 1 15.9980 -5.4961 -6.0401 24 1 15.9223 -5.2282 -8.4488 25 1 16.0132 -3.2751 -7.0137 26 7 3.5092 -0.7426 -1.2375 27 6 2.0409 -0.7239 -1.2477 28 1 -0.3633 0.5127 0.8907 29 1 -0.3633 0.5151 -0.8893 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1309 1.4415 -0.0005 32 1 1.6767 1.9566 -0.8893 33 1 1.6790 1.9559 0.8906 34 1 1.6452 -1.7386 1.2696 35 1 1.7157 -0.1872 2.1405 36 1 3.9395 -1.3228 2.0763 37 1 3.9684 0.2434 1.2300 38 1 5.9404 -0.4924 -0.0234 39 1 5.9298 -2.1224 0.6916 40 1 5.3258 -2.3529 -2.0575 41 1 9.7143 -2.6190 -2.5977 42 1 9.0997 -4.4791 -4.6321 43 1 9.1103 -2.8491 -5.3470 44 1 11.4062 -2.4858 -4.4827 45 1 11.3949 -4.1160 -3.7680 46 1 11.0805 -5.1024 -6.0207 47 1 11.0917 -3.4726 -6.7361 48 1 13.3659 -5.4044 -8.8934 49 1 3.8831 0.1940 -1.2709 50 1 1.6905 -0.2031 -2.1388 51 1 1.6648 -1.7469 -1.2537 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884630837.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:20 Heat of formation + Delta-G solvation = -104.019911 kcal Electronic energy + Delta-G solvation = -27115.294727 eV Core-core repulsion = 23241.078108 eV Total energy + Delta-G solvation = -3874.216619 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.73597 -40.16561 -38.40845 -36.09161 -35.46228 -33.63172 -33.18151 -32.14238 -31.20610 -28.84932 -27.91713 -27.14373 -25.48371 -24.45560 -23.51432 -22.25064 -21.64430 -20.72051 -20.00310 -19.32879 -18.33776 -16.83658 -16.32405 -16.27119 -16.12411 -15.69576 -15.53088 -15.41825 -15.00657 -14.68714 -14.48574 -14.43166 -14.30580 -13.87741 -13.56463 -13.42946 -12.99260 -12.66043 -12.52279 -12.34120 -12.27909 -12.04585 -11.95416 -11.86295 -11.77547 -11.74712 -11.59712 -11.47658 -10.93183 -10.87518 -10.81298 -10.72708 -10.61534 -9.86880 -9.72934 -9.37012 -9.33007 -9.11874 -8.91409 -8.81176 -8.35747 -6.00645 -4.03652 1.51835 2.43104 3.32018 3.33956 3.38409 3.40731 3.61579 3.81805 4.09483 4.13998 4.26688 4.42005 4.45858 4.50725 4.62696 4.70263 4.85772 4.90237 5.02727 5.09400 5.15928 5.21409 5.29653 5.33475 5.35196 5.35805 5.42378 5.45199 5.50174 5.59322 5.64009 5.70802 5.73415 5.74184 5.84452 6.08207 6.12184 6.33664 6.50657 6.57693 6.74407 6.88932 6.98286 7.05460 7.51607 7.63886 7.76063 7.83308 7.97755 8.13884 8.39172 9.02626 9.60507 11.10545 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.038220 B = 0.001595 C = 0.001561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.418299 B =17552.056082 C =17932.613890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.105 4.105 3 C -0.145 4.145 4 C -0.106 4.106 5 C -0.151 4.151 6 C 0.074 3.926 7 H 0.091 0.909 8 C 0.125 3.875 9 N -0.691 5.691 10 C 0.506 3.494 11 O -0.527 6.527 12 C 0.500 3.500 13 O -0.525 6.525 14 N -0.693 5.693 15 C 0.114 3.886 16 C -0.123 4.123 17 C 0.024 3.976 18 C -0.524 4.524 19 H 0.055 0.945 20 C 0.057 3.943 21 N -0.894 5.894 22 Si 0.894 3.106 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 N -0.679 5.679 27 C 0.069 3.931 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.421 0.579 41 H 0.410 0.590 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.020 0.980 47 H 0.020 0.980 48 H 0.262 0.738 49 H 0.344 0.656 50 H 0.078 0.922 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.425 11.187 20.501 35.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.107 4.107 3 C -0.202 4.202 4 C -0.144 4.144 5 C -0.191 4.191 6 C -0.036 4.036 7 H 0.109 0.891 8 C 0.001 3.999 9 N -0.345 5.345 10 C 0.287 3.713 11 O -0.404 6.404 12 C 0.280 3.720 13 O -0.401 6.401 14 N -0.345 5.345 15 C -0.008 4.008 16 C -0.161 4.161 17 C -0.013 4.013 18 C -0.562 4.562 19 H 0.074 0.926 20 C -0.144 4.144 21 N -0.533 5.533 22 Si 0.722 3.278 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.202 1.202 26 N -0.309 5.309 27 C -0.060 4.060 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.259 0.741 41 H 0.246 0.754 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.038 0.962 47 H 0.038 0.962 48 H 0.071 0.929 49 H 0.163 0.837 50 H 0.096 0.904 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -26.337 10.548 19.857 34.629 hybrid contribution 0.817 0.638 0.696 1.249 sum -25.520 11.187 20.553 34.624 Atomic orbital electron populations 1.21793 0.94098 1.01879 1.01868 1.21299 0.96288 0.96106 0.96991 1.21924 1.00983 0.95266 1.02073 1.21598 0.94807 1.00634 0.97356 1.22236 0.96534 1.01636 0.98692 1.21856 0.93364 0.99281 0.89119 0.89115 1.21473 0.93109 0.99523 0.85788 1.45605 1.06866 1.62397 1.19651 1.20348 0.83406 0.79704 0.87872 1.90750 1.52457 1.48660 1.48495 1.20024 0.84040 0.80612 0.87360 1.90763 1.52292 1.48778 1.48291 1.46061 1.06272 1.61504 1.20647 1.21826 0.97324 0.98688 0.82973 1.21927 0.90394 1.01464 1.02285 1.19029 0.96105 0.96204 0.89987 1.21172 0.91677 1.41582 1.01765 0.92625 1.25020 0.98361 0.95333 0.95690 1.69953 1.35424 1.41948 1.05949 0.86634 0.85683 0.78338 0.77189 1.20244 1.21283 1.20237 1.60651 1.07576 1.22042 1.40635 1.22089 0.87048 1.00729 0.96184 0.92740 0.92446 0.92543 0.92574 0.92396 0.92537 0.91698 0.91747 0.90917 0.91212 0.91170 0.90452 0.74149 0.75382 0.91148 0.91130 0.92451 0.92459 0.96193 0.96189 0.92885 0.83680 0.90392 0.90696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.57 8.48 37.16 0.32 -0.25 16 2 C -0.11 -0.46 0.77 -154.43 -0.12 -0.58 16 3 C -0.15 -0.64 7.87 37.16 0.29 -0.35 16 4 C -0.11 -0.47 4.79 -26.61 -0.13 -0.60 16 5 C -0.15 -0.69 5.00 -26.65 -0.13 -0.83 16 6 C 0.07 0.42 2.58 -67.72 -0.17 0.25 16 7 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 8 C 0.13 0.97 5.32 -4.04 -0.02 0.94 16 9 N -0.69 -7.13 5.38 -60.73 -0.33 -7.45 16 10 C 0.51 6.80 7.89 -11.58 -0.09 6.71 16 11 O -0.53 -8.01 16.48 5.50 0.09 -7.92 16 12 C 0.50 7.70 7.89 -11.58 -0.09 7.61 16 13 O -0.52 -9.19 16.48 5.50 0.09 -9.10 16 14 N -0.69 -10.69 5.55 -60.73 -0.34 -11.02 16 15 C 0.11 2.00 5.67 -4.04 -0.02 1.98 16 16 C -0.12 -2.42 5.27 -26.73 -0.14 -2.56 16 17 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 18 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 19 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 21 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 22 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 26 N -0.68 -4.10 5.88 -106.77 -0.63 -4.73 16 27 C 0.07 0.36 5.34 -3.84 -0.02 0.34 16 28 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.26 5.13 -51.93 -0.27 -0.01 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.07 0.31 8.14 -51.92 -0.42 -0.11 16 37 H 0.07 0.33 6.59 -51.93 -0.34 -0.01 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.42 4.31 7.61 -40.82 -0.31 4.00 16 41 H 0.41 5.79 7.95 -40.82 -0.32 5.47 16 42 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 45 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 49 H 0.34 2.06 7.08 -39.29 -0.28 1.78 16 50 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 51 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 405.42 15.07 6.11 6.11 Total: -1.00 -31.63 405.42 -9.27 -40.90 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -9.10 Total: 2.99 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -0.89 Total: -0.30 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: -0.55 Total: -49.24 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: 0.18 Total: -17.02 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.63 -9.27 -40.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884630837.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.122 kcal (2) G-P(sol) polarization free energy of solvation -31.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds