Wall clock time and date at job start Fri Apr 10 2020 18:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.50485 * 2 1 4 4 C 1.53123 * 109.49984 * 120.07726 * 2 1 3 5 5 C 1.53118 * 109.15585 * 177.59503 * 4 2 1 6 6 C 1.53036 * 109.28007 * 302.34276 * 5 4 2 7 7 H 1.08998 * 109.46728 * 299.16963 * 6 5 4 8 8 C 1.53004 * 109.46346 * 179.19722 * 6 5 4 9 9 N 1.46501 * 109.46728 * 184.95055 * 8 6 5 10 10 C 1.34781 * 119.99383 * 180.02562 * 9 8 6 11 11 O 1.21345 * 120.00442 * 359.97438 * 10 9 8 12 12 C 1.49460 * 119.99672 * 179.97438 * 10 9 8 13 13 O 1.21345 * 119.99886 * 359.97438 * 12 10 9 14 14 N 1.34769 * 119.99926 * 179.97438 * 12 10 9 15 15 C 1.46502 * 120.00159 * 180.02562 * 14 12 10 16 16 C 1.53004 * 109.47249 * 180.02562 * 15 14 12 17 17 C 1.52999 * 109.47153 * 179.97438 * 16 15 14 18 18 C 1.50699 * 109.46982 * 179.97438 * 17 16 15 19 19 H 1.07995 * 120.00213 * 0.02562 * 18 17 16 20 20 C 1.37882 * 119.99644 * 180.02562 * 18 17 16 21 21 N 1.31507 * 119.99962 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99838 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47121 * 60.00083 * 22 20 18 24 24 H 1.48502 * 109.46959 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46985 * 300.00279 * 22 20 18 26 26 N 1.46846 * 109.52162 * 59.18140 * 6 5 4 27 27 C 1.46846 * 111.19997 * 298.26076 * 26 6 5 28 28 H 1.09007 * 109.46955 * 299.92215 * 1 2 3 29 29 H 1.09002 * 109.46994 * 59.91752 * 1 2 3 30 30 H 1.08996 * 109.47470 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47069 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47101 * 300.07633 * 3 2 1 33 33 H 1.08996 * 109.47524 * 60.07582 * 3 2 1 34 34 H 1.08993 * 109.52379 * 57.69107 * 4 2 1 35 35 H 1.08997 * 109.57561 * 297.52739 * 4 2 1 36 36 H 1.09008 * 109.50062 * 182.40805 * 5 4 2 37 37 H 1.09002 * 109.53946 * 62.30558 * 5 4 2 38 38 H 1.08994 * 109.47246 * 304.94774 * 8 6 5 39 39 H 1.08994 * 109.46918 * 64.95070 * 8 6 5 40 40 H 0.96996 * 120.00586 * 359.97438 * 9 8 6 41 41 H 0.97008 * 120.00211 * 0.02562 * 14 12 10 42 42 H 1.08994 * 109.46924 * 300.00167 * 15 14 12 43 43 H 1.08994 * 109.46991 * 60.00310 * 15 14 12 44 44 H 1.09002 * 109.47071 * 300.00156 * 16 15 14 45 45 H 1.09004 * 109.46926 * 60.00165 * 16 15 14 46 46 H 1.08994 * 109.47102 * 300.00159 * 17 16 15 47 47 H 1.09004 * 109.46681 * 59.99847 * 17 16 15 48 48 H 0.97005 * 119.99868 * 179.97438 * 21 20 18 49 49 H 1.00904 * 111.00089 * 62.35801 * 26 6 5 50 50 H 1.08999 * 109.46373 * 181.76104 * 27 26 6 51 51 H 1.08998 * 109.45881 * 301.72191 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0409 1.4422 0.0000 4 6 2.0412 -0.7234 1.2490 5 6 3.5711 -0.7715 1.2110 6 6 4.0229 -1.4731 -0.0718 7 1 3.6374 -2.4926 -0.0834 8 6 5.5517 -1.5057 -0.1237 9 7 5.9848 -2.0702 -1.4044 10 6 7.2991 -2.1978 -1.6745 11 8 8.1236 -1.8446 -0.8572 12 6 7.7410 -2.7742 -2.9807 13 8 6.9165 -3.1278 -3.7978 14 7 9.0551 -2.9013 -3.2511 15 6 9.4884 -3.4658 -4.5317 16 6 11.0172 -3.4990 -4.5834 17 6 11.4695 -4.0892 -5.9205 18 6 12.9753 -4.1213 -5.9716 19 1 13.5520 -3.7576 -5.1340 20 6 13.6168 -4.6150 -7.0878 21 7 12.9146 -5.0574 -8.1079 22 14 15.4833 -4.6556 -7.1509 23 1 15.9980 -5.4961 -6.0401 24 1 15.9223 -5.2282 -8.4488 25 1 16.0132 -3.2751 -7.0137 26 7 3.5092 -0.7426 -1.2375 27 6 2.0409 -0.7239 -1.2477 28 1 -0.3633 0.5127 0.8907 29 1 -0.3633 0.5151 -0.8893 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1309 1.4415 -0.0005 32 1 1.6767 1.9566 -0.8893 33 1 1.6790 1.9559 0.8906 34 1 1.6452 -1.7386 1.2696 35 1 1.7157 -0.1872 2.1405 36 1 3.9395 -1.3228 2.0763 37 1 3.9684 0.2434 1.2300 38 1 5.9404 -0.4924 -0.0234 39 1 5.9298 -2.1224 0.6916 40 1 5.3258 -2.3529 -2.0575 41 1 9.7143 -2.6190 -2.5977 42 1 9.0997 -4.4791 -4.6321 43 1 9.1103 -2.8491 -5.3470 44 1 11.4062 -2.4858 -4.4827 45 1 11.3949 -4.1160 -3.7680 46 1 11.0805 -5.1024 -6.0207 47 1 11.0917 -3.4726 -6.7361 48 1 13.3659 -5.4044 -8.8934 49 1 3.8831 0.1940 -1.2709 50 1 1.6905 -0.2031 -2.1388 51 1 1.6648 -1.7469 -1.2537 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884630837.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:19 Heat of formation + Delta-G solvation = -126.750972 kcal Electronic energy + Delta-G solvation = -27116.280420 eV Core-core repulsion = 23241.078108 eV Total energy + Delta-G solvation = -3875.202312 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.71921 -40.79645 -39.55951 -37.22732 -36.57145 -35.23065 -34.16639 -33.01776 -32.56789 -29.58451 -28.77299 -28.25901 -26.42997 -25.37882 -24.51222 -23.40748 -22.35239 -22.19807 -21.17764 -19.73750 -19.50161 -18.50000 -17.87428 -17.24579 -16.79716 -16.62200 -16.51346 -16.34654 -16.06940 -15.96074 -15.67284 -15.15726 -14.93372 -14.84953 -14.57803 -14.25096 -14.15040 -13.77280 -13.54860 -13.44280 -13.19913 -12.90398 -12.82472 -12.71936 -12.71500 -12.53408 -12.44684 -12.42387 -12.39922 -12.16896 -11.89172 -11.68311 -11.54127 -11.31558 -11.23939 -11.19027 -10.67151 -10.53099 -10.31297 -10.21457 -9.25893 -8.18114 -6.29211 0.35793 1.34034 1.43071 1.45633 1.53567 2.15441 2.42874 2.66943 3.15638 3.22239 3.48133 3.62750 3.77215 3.88712 3.99342 4.08056 4.10118 4.19536 4.24220 4.43238 4.50823 4.53881 4.61523 4.64122 4.76348 4.78049 4.85764 4.89046 4.92478 4.92871 4.96187 5.05584 5.09012 5.12808 5.16075 5.17341 5.23897 5.25982 5.35859 5.40189 5.48621 5.52483 5.71903 5.85405 5.94529 6.06493 6.24286 6.38974 6.43105 6.76246 6.87412 6.96586 7.40051 8.93481 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.038220 B = 0.001595 C = 0.001561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.418299 B =17552.056082 C =17932.613890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.100 4.100 3 C -0.143 4.143 4 C -0.104 4.104 5 C -0.146 4.146 6 C 0.083 3.917 7 H 0.090 0.910 8 C 0.124 3.876 9 N -0.675 5.675 10 C 0.511 3.489 11 O -0.546 6.546 12 C 0.500 3.500 13 O -0.548 6.548 14 N -0.687 5.687 15 C 0.127 3.873 16 C -0.106 4.106 17 C 0.025 3.975 18 C -0.545 4.545 19 H 0.064 0.936 20 C -0.001 4.001 21 N -0.932 5.932 22 Si 0.966 3.034 23 H -0.267 1.267 24 H -0.285 1.285 25 H -0.267 1.267 26 N -0.689 5.689 27 C 0.071 3.929 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.422 0.578 41 H 0.419 0.581 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.067 0.933 45 H 0.067 0.933 46 H -0.004 1.004 47 H -0.004 1.004 48 H 0.263 0.737 49 H 0.344 0.656 50 H 0.076 0.924 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.397 11.902 22.205 36.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.102 4.102 3 C -0.200 4.200 4 C -0.142 4.142 5 C -0.186 4.186 6 C -0.027 4.027 7 H 0.109 0.891 8 C 0.001 3.999 9 N -0.328 5.328 10 C 0.291 3.709 11 O -0.424 6.424 12 C 0.281 3.719 13 O -0.426 6.426 14 N -0.340 5.340 15 C 0.004 3.996 16 C -0.144 4.144 17 C -0.013 4.013 18 C -0.583 4.583 19 H 0.082 0.918 20 C -0.199 4.199 21 N -0.572 5.572 22 Si 0.790 3.210 23 H -0.192 1.192 24 H -0.210 1.210 25 H -0.192 1.192 26 N -0.319 5.319 27 C -0.058 4.058 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.261 0.739 41 H 0.256 0.744 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.015 0.985 47 H 0.015 0.985 48 H 0.072 0.928 49 H 0.164 0.836 50 H 0.094 0.906 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -26.338 11.280 21.597 35.880 hybrid contribution 0.718 0.422 0.161 0.849 sum -25.620 11.702 21.759 35.591 Atomic orbital electron populations 1.21776 0.93822 1.01942 1.01952 1.21243 0.96450 0.95969 0.96559 1.21903 1.00878 0.95214 1.02051 1.21580 0.94551 1.00641 0.97398 1.22184 0.96669 1.01580 0.98123 1.21760 0.91804 0.99439 0.89701 0.89149 1.21675 0.94475 0.99407 0.84376 1.45636 1.05698 1.60961 1.20469 1.19910 0.84267 0.79920 0.86759 1.90749 1.53053 1.49931 1.48667 1.20405 0.83569 0.79977 0.87968 1.90753 1.52820 1.49760 1.49264 1.45878 1.06792 1.61356 1.19961 1.21465 0.95755 0.98420 0.83946 1.21641 0.91817 1.01623 0.99279 1.18934 0.95213 0.94822 0.92343 1.21658 0.93115 1.41360 1.02120 0.91762 1.25977 1.03718 0.94864 0.95296 1.70093 1.37590 1.42917 1.06643 0.85495 0.79272 0.78829 0.77396 1.19175 1.21040 1.19170 1.60648 1.08142 1.22162 1.40930 1.22062 0.86544 1.00634 0.96586 0.92556 0.92471 0.92499 0.92687 0.92564 0.92417 0.91742 0.91413 0.90305 0.91112 0.90999 0.89993 0.73948 0.74388 0.91805 0.91818 0.91467 0.91460 0.98526 0.98539 0.92806 0.83627 0.90590 0.91016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 8.48 71.98 0.61 -0.35 16 2 C -0.10 -0.74 0.77 -52.13 -0.04 -0.78 16 3 C -0.14 -1.08 7.87 71.98 0.57 -0.52 16 4 C -0.10 -0.74 4.79 30.67 0.15 -0.60 16 5 C -0.15 -1.08 5.00 30.65 0.15 -0.93 16 6 C 0.08 0.82 2.58 44.94 0.12 0.94 16 7 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 8 C 0.12 1.71 5.32 86.38 0.46 2.17 16 9 N -0.68 -13.08 5.38 -464.40 -2.50 -15.58 16 10 C 0.51 13.17 7.89 87.27 0.69 13.86 16 11 O -0.55 -15.85 16.48 -3.23 -0.05 -15.91 16 12 C 0.50 15.05 7.89 87.27 0.69 15.73 16 13 O -0.55 -18.99 16.48 -3.23 -0.05 -19.04 16 14 N -0.69 -20.62 5.55 -464.42 -2.58 -23.20 16 15 C 0.13 4.44 5.67 86.38 0.49 4.93 16 16 C -0.11 -4.12 5.27 30.60 0.16 -3.96 16 17 C 0.02 1.27 4.97 29.85 0.15 1.42 16 18 C -0.54 -30.55 9.11 25.60 0.23 -30.32 16 19 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 20 C 0.00 -0.04 5.46 84.66 0.46 0.43 16 21 N -0.93 -56.69 13.29 21.45 0.28 -56.40 16 22 Si 0.97 44.01 29.54 68.60 2.03 46.03 16 23 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 24 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 25 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 26 N -0.69 -7.52 5.88 -491.70 -2.89 -10.40 16 27 C 0.07 0.67 5.34 86.32 0.46 1.13 16 28 H 0.06 0.38 8.14 -2.38 -0.02 0.36 16 29 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.05 0.43 5.13 -2.39 -0.01 0.42 16 32 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.08 0.52 8.14 -2.38 -0.02 0.50 16 37 H 0.07 0.54 6.59 -2.39 -0.02 0.52 16 38 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.42 8.19 7.61 -92.71 -0.71 7.48 16 41 H 0.42 11.27 7.95 -92.70 -0.74 10.53 16 42 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 43 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 44 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 45 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 46 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 47 H 0.00 -0.21 8.14 -2.38 -0.02 -0.23 16 48 H 0.26 15.10 8.31 -92.70 -0.77 14.33 16 49 H 0.34 3.71 7.08 -89.69 -0.64 3.08 16 50 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 51 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -67.08 405.42 -1.56 -68.64 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: -1.15 Total: 22.70 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: 5.35 Total: 3.16 kcal Atomic # 7 Polarization: -97.90 SS G_CDS: -7.68 Total: -105.58 kcal Atomic # 8 Polarization: -34.84 SS G_CDS: -0.11 Total: -34.95 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -67.08 -1.56 -68.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884630837.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.112 kcal (2) G-P(sol) polarization free energy of solvation -67.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds