Wall clock time and date at job start Fri Apr 10 2020 18:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 108.81974 * 2 1 4 4 C 1.54063 * 108.92059 * 118.61585 * 2 1 3 5 5 N 1.44276 * 111.98188 * 79.62847 * 4 2 1 6 6 C 1.47808 * 109.45181 * 96.43878 * 5 4 2 7 7 C 1.45861 * 112.91973 * 276.74376 * 6 5 4 8 8 C 1.54507 * 111.59474 * 61.32903 * 7 6 5 9 9 H 1.08996 * 109.57444 * 42.74881 * 8 7 6 10 10 N 1.46502 * 109.57119 * 163.00059 * 8 7 6 11 11 C 1.34780 * 119.99677 * 274.99549 * 10 8 7 12 12 O 1.21350 * 120.00051 * 0.02562 * 11 10 8 13 13 C 1.49450 * 119.99738 * 180.02562 * 11 10 8 14 14 O 1.21350 * 120.00211 * 359.97438 * 13 11 10 15 15 N 1.34777 * 120.00146 * 179.97438 * 13 11 10 16 16 C 1.46495 * 120.00361 * 179.97438 * 15 13 11 17 17 C 1.53006 * 109.47273 * 180.02562 * 16 15 13 18 18 C 1.53000 * 109.47066 * 180.02562 * 17 16 15 19 19 C 1.50701 * 109.47109 * 180.02562 * 18 17 16 20 20 H 1.07999 * 119.99972 * 0.02562 * 19 18 17 21 21 C 1.37871 * 119.99782 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00570 * 0.02562 * 21 19 18 23 23 Si 1.86811 * 119.99656 * 180.02562 * 21 19 18 24 24 H 1.48491 * 109.47075 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46569 * 120.00615 * 23 21 19 26 26 H 1.48507 * 109.46946 * 240.00222 * 23 21 19 27 27 C 1.50459 * 108.84877 * 282.80492 * 8 7 6 28 28 H 1.09004 * 109.47172 * 301.38080 * 1 2 3 29 29 H 1.09002 * 109.47283 * 61.38674 * 1 2 3 30 30 H 1.09002 * 109.47120 * 181.38847 * 1 2 3 31 31 H 1.09001 * 109.47342 * 178.61456 * 3 2 1 32 32 H 1.09000 * 109.47258 * 298.61174 * 3 2 1 33 33 H 1.08996 * 109.47484 * 58.61541 * 3 2 1 34 34 H 1.09005 * 108.97860 * 318.99215 * 4 2 1 35 35 H 1.08990 * 108.97974 * 200.27617 * 4 2 1 36 36 H 1.00897 * 111.00182 * 333.57482 * 5 4 2 37 37 H 1.09004 * 108.78733 * 37.63325 * 6 5 4 38 38 H 1.09003 * 108.79159 * 155.85412 * 6 5 4 39 39 H 1.09000 * 109.05385 * 181.87492 * 7 6 5 40 40 H 1.08996 * 109.05637 * 300.78170 * 7 6 5 41 41 H 0.96994 * 120.00263 * 95.00091 * 10 8 7 42 42 H 0.97004 * 119.99504 * 0.02562 * 15 13 11 43 43 H 1.08998 * 109.47498 * 300.00800 * 16 15 13 44 44 H 1.09001 * 109.46759 * 60.00341 * 16 15 13 45 45 H 1.08993 * 109.47350 * 300.00324 * 17 16 15 46 46 H 1.09001 * 109.46958 * 60.00452 * 17 16 15 47 47 H 1.09006 * 109.47346 * 300.00467 * 18 17 16 48 48 H 1.09001 * 109.46956 * 60.00338 * 18 17 16 49 49 H 0.97003 * 120.00360 * 179.97438 * 22 21 19 50 50 H 1.09005 * 108.77199 * 213.06749 * 27 8 7 51 51 H 1.08996 * 108.77572 * 331.35609 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0235 1.4481 0.0000 4 6 2.0295 -0.6980 1.2794 5 7 1.9768 -2.1353 1.1661 6 6 3.3045 -2.6465 0.7652 7 6 3.5269 -2.5818 -0.6749 8 6 3.4697 -1.1278 -1.1943 9 1 4.0068 -0.4733 -0.5078 10 7 4.0842 -1.0565 -2.5223 11 6 5.4186 -0.9080 -2.6402 12 8 6.1110 -0.8338 -1.6464 13 6 6.0454 -0.8347 -3.9949 14 8 5.3531 -0.9094 -4.9887 15 7 7.3797 -0.6857 -4.1130 16 6 7.9943 -0.6145 -5.4409 17 6 9.5080 -0.4467 -5.2940 18 6 10.1497 -0.3716 -6.6809 19 6 11.6407 -0.2069 -6.5363 20 1 12.0861 -0.1609 -5.5535 21 6 12.4363 -0.1161 -7.6587 22 7 11.8940 -0.1727 -8.8554 23 14 14.2846 0.0872 -7.4793 24 1 14.6412 0.1220 -6.0383 25 1 14.9737 -1.0548 -8.1321 26 1 14.7080 1.3556 -8.1253 27 6 2.0301 -0.6990 -1.2814 28 1 -0.3634 0.5351 0.8774 29 1 -0.3634 0.4921 -0.9022 30 1 -0.3633 -1.0274 0.0249 31 1 3.1132 1.4607 0.0248 32 1 1.6749 1.9508 -0.9022 33 1 1.6342 1.9647 0.8773 34 1 1.4087 -0.3857 2.1191 35 1 3.0590 -0.3949 1.4696 36 1 1.2661 -2.4205 0.5091 37 1 4.0732 -2.0580 1.2662 38 1 3.3935 -3.6838 1.0880 39 1 4.5061 -3.0029 -0.9030 40 1 2.7613 -3.1705 -1.1801 41 1 3.5308 -1.1161 -3.3166 42 1 7.9332 -0.6264 -3.3185 43 1 7.7823 -1.5323 -5.9891 44 1 7.5851 0.2366 -5.9853 45 1 9.7204 0.4710 -4.7457 46 1 9.9168 -1.2980 -4.7498 47 1 9.9373 -1.2892 -7.2297 48 1 9.7409 0.4800 -7.2248 49 1 12.4538 -0.1084 -9.6451 50 1 1.9186 -0.0132 -2.1214 51 1 1.4125 -1.5785 -1.4630 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884631011.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:24 Heat of formation + Delta-G solvation = -96.817584 kcal Electronic energy + Delta-G solvation = -27802.693784 eV Core-core repulsion = 23928.789481 eV Total energy + Delta-G solvation = -3873.904303 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.12590 -40.05631 -38.42689 -35.96377 -35.46337 -35.10421 -33.36015 -31.63483 -31.27192 -28.77131 -27.80798 -27.26313 -25.64881 -24.92304 -23.31207 -22.43180 -21.37735 -20.80692 -20.38532 -19.27612 -18.22966 -17.20917 -16.50521 -16.33760 -16.18835 -16.01639 -15.60134 -15.12854 -15.07771 -14.66814 -14.59880 -14.45729 -13.93889 -13.71142 -13.53623 -13.51914 -13.32226 -12.91140 -12.68104 -12.33962 -12.32459 -12.05960 -11.91587 -11.82994 -11.78308 -11.54778 -11.41076 -11.24525 -11.10508 -10.94671 -10.85216 -10.78729 -10.59715 -9.93138 -9.82125 -9.54658 -9.40144 -9.14011 -9.01907 -8.85819 -8.40197 -6.04643 -4.07680 1.36685 2.26518 3.17154 3.28806 3.36443 3.40285 3.56826 3.88033 4.02630 4.12525 4.23177 4.41259 4.44477 4.49157 4.59334 4.66835 4.85272 4.96587 5.09746 5.11498 5.17868 5.23835 5.31442 5.32763 5.38807 5.44854 5.50126 5.53076 5.56190 5.64476 5.66029 5.69936 5.73812 5.77541 5.86067 6.01020 6.04973 6.23267 6.51208 6.59122 6.65943 6.86958 6.92608 6.95684 7.35987 7.59719 7.67496 7.70940 7.93644 8.00792 8.34863 8.99047 9.56879 11.06623 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.029715 B = 0.001808 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.066656 B =15481.123993 C =15693.377935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.091 4.091 3 C -0.144 4.144 4 C 0.059 3.941 5 N -0.670 5.670 6 C 0.051 3.949 7 C -0.162 4.162 8 C 0.145 3.855 9 H 0.095 0.905 10 N -0.700 5.700 11 C 0.510 3.490 12 O -0.519 6.519 13 C 0.499 3.501 14 O -0.527 6.527 15 N -0.691 5.691 16 C 0.113 3.887 17 C -0.123 4.123 18 C 0.024 3.976 19 C -0.522 4.522 20 H 0.057 0.943 21 C 0.056 3.944 22 N -0.894 5.894 23 Si 0.893 3.107 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.284 1.284 27 C -0.125 4.125 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.341 0.659 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.412 0.588 42 H 0.411 0.589 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.057 0.943 46 H 0.057 0.943 47 H 0.020 0.980 48 H 0.020 0.980 49 H 0.261 0.739 50 H 0.077 0.923 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.100 -1.690 19.940 32.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.094 4.094 3 C -0.201 4.201 4 C -0.071 4.071 5 N -0.299 5.299 6 C -0.079 4.079 7 C -0.202 4.202 8 C 0.040 3.960 9 H 0.113 0.887 10 N -0.353 5.353 11 C 0.291 3.709 12 O -0.394 6.394 13 C 0.279 3.721 14 O -0.404 6.404 15 N -0.342 5.342 16 C -0.009 4.009 17 C -0.161 4.161 18 C -0.014 4.014 19 C -0.561 4.561 20 H 0.075 0.925 21 C -0.145 4.145 22 N -0.533 5.533 23 Si 0.721 3.279 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.210 1.210 27 C -0.163 4.163 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.159 0.841 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.248 0.752 42 H 0.247 0.753 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.038 0.962 48 H 0.038 0.962 49 H 0.070 0.930 50 H 0.095 0.905 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -24.935 -1.810 20.444 32.296 hybrid contribution 1.102 0.397 -1.155 1.645 sum -23.834 -1.413 19.289 30.694 Atomic orbital electron populations 1.21905 0.93809 1.01916 1.02138 1.21635 0.96375 0.96460 0.94886 1.21927 1.01322 0.94740 1.02142 1.22073 1.01719 0.87603 0.95750 1.61102 1.06016 1.09820 1.52956 1.20948 0.91359 1.01995 0.93581 1.21672 1.03778 0.96450 0.98288 1.20854 0.93780 0.97171 0.84160 0.88700 1.45889 1.07010 1.72598 1.09790 1.20372 0.83203 0.77350 0.90013 1.90758 1.61895 1.47906 1.38803 1.20021 0.83886 0.79156 0.89070 1.90761 1.62029 1.49073 1.38506 1.46077 1.06331 1.70123 1.11705 1.21852 0.94983 1.02439 0.81579 1.21929 0.90386 1.01187 1.02565 1.19041 0.95149 0.97690 0.89495 1.21236 0.92075 1.50138 0.92602 0.92504 1.25031 0.98834 0.95283 0.95348 1.69971 1.35402 1.50444 0.97463 0.86516 0.85480 0.77698 0.78186 1.19723 1.20991 1.20988 1.21815 0.94473 1.01357 0.98641 0.92141 0.92521 0.92520 0.92478 0.92406 0.92235 0.90710 0.91401 0.84071 0.90876 0.90433 0.90464 0.91425 0.75161 0.75312 0.91085 0.91083 0.92423 0.92417 0.96189 0.96187 0.92964 0.90473 0.91182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.62 8.13 37.16 0.30 -0.32 16 2 C -0.09 -0.47 0.52 -153.28 -0.08 -0.55 16 3 C -0.14 -0.82 8.14 37.15 0.30 -0.52 16 4 C 0.06 0.34 4.77 -4.67 -0.02 0.32 16 5 N -0.67 -4.11 6.91 -118.14 -0.82 -4.93 16 6 C 0.05 0.34 5.87 -6.70 -0.04 0.30 16 7 C -0.16 -1.16 4.96 -29.32 -0.15 -1.31 16 8 C 0.14 1.11 2.07 -68.41 -0.14 0.97 16 9 H 0.10 0.88 5.87 -51.93 -0.30 0.58 16 10 N -0.70 -6.63 4.99 -54.70 -0.27 -6.91 16 11 C 0.51 6.42 7.79 -11.58 -0.09 6.33 16 12 O -0.52 -7.42 16.15 5.50 0.09 -7.33 16 13 C 0.50 7.29 7.89 -11.58 -0.09 7.20 16 14 O -0.53 -8.77 16.48 5.50 0.09 -8.68 16 15 N -0.69 -10.21 5.55 -60.73 -0.34 -10.54 16 16 C 0.11 1.93 5.67 -4.04 -0.02 1.91 16 17 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 18 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 19 C -0.52 -14.49 9.11 -34.44 -0.31 -14.81 16 20 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 21 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 22 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 23 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 24 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 27 C -0.12 -0.70 3.67 -27.32 -0.10 -0.81 16 28 H 0.06 0.26 8.12 -51.93 -0.42 -0.16 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.23 7.48 -51.93 -0.39 -0.16 16 31 H 0.06 0.39 7.41 -51.93 -0.38 0.00 16 32 H 0.06 0.34 8.06 -51.93 -0.42 -0.08 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.43 7.96 -51.93 -0.41 0.02 16 35 H 0.07 0.46 6.33 -51.93 -0.33 0.13 16 36 H 0.34 1.81 6.64 -39.29 -0.26 1.54 16 37 H 0.07 0.55 7.24 -51.93 -0.38 0.18 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.70 8.06 -51.93 -0.42 0.28 16 40 H 0.07 0.43 7.59 -51.93 -0.39 0.03 16 41 H 0.41 3.53 7.99 -40.82 -0.33 3.21 16 42 H 0.41 5.55 7.94 -40.82 -0.32 5.23 16 43 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 44 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 45 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 50 H 0.08 0.46 7.67 -51.93 -0.40 0.06 16 51 H 0.07 0.34 6.61 -51.93 -0.34 0.00 16 LS Contribution 398.82 15.07 6.01 6.01 Total: -1.00 -31.25 398.82 -9.19 -40.44 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -8.85 Total: 3.20 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -0.82 Total: -1.82 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: -0.69 Total: -48.24 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: 0.18 Total: -16.01 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.25 -9.19 -40.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884631011.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.379 kcal (2) G-P(sol) polarization free energy of solvation -31.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds