Wall clock time and date at job start Fri Apr 10 2020 18:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 108.81974 * 2 1 4 4 C 1.54063 * 108.92059 * 118.61585 * 2 1 3 5 5 N 1.44276 * 111.98188 * 79.62847 * 4 2 1 6 6 C 1.47808 * 109.45181 * 96.43878 * 5 4 2 7 7 C 1.45861 * 112.91973 * 276.74376 * 6 5 4 8 8 C 1.54507 * 111.59474 * 61.32903 * 7 6 5 9 9 H 1.08996 * 109.57444 * 42.74881 * 8 7 6 10 10 N 1.46502 * 109.57119 * 163.00059 * 8 7 6 11 11 C 1.34780 * 119.99677 * 274.99549 * 10 8 7 12 12 O 1.21350 * 120.00051 * 0.02562 * 11 10 8 13 13 C 1.49450 * 119.99738 * 180.02562 * 11 10 8 14 14 O 1.21350 * 120.00211 * 359.97438 * 13 11 10 15 15 N 1.34777 * 120.00146 * 179.97438 * 13 11 10 16 16 C 1.46495 * 120.00361 * 179.97438 * 15 13 11 17 17 C 1.53006 * 109.47273 * 180.02562 * 16 15 13 18 18 C 1.53000 * 109.47066 * 180.02562 * 17 16 15 19 19 C 1.50701 * 109.47109 * 180.02562 * 18 17 16 20 20 H 1.07999 * 119.99972 * 0.02562 * 19 18 17 21 21 C 1.37871 * 119.99782 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00570 * 0.02562 * 21 19 18 23 23 Si 1.86811 * 119.99656 * 180.02562 * 21 19 18 24 24 H 1.48491 * 109.47075 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46569 * 120.00615 * 23 21 19 26 26 H 1.48507 * 109.46946 * 240.00222 * 23 21 19 27 27 C 1.50459 * 108.84877 * 282.80492 * 8 7 6 28 28 H 1.09004 * 109.47172 * 301.38080 * 1 2 3 29 29 H 1.09002 * 109.47283 * 61.38674 * 1 2 3 30 30 H 1.09002 * 109.47120 * 181.38847 * 1 2 3 31 31 H 1.09001 * 109.47342 * 178.61456 * 3 2 1 32 32 H 1.09000 * 109.47258 * 298.61174 * 3 2 1 33 33 H 1.08996 * 109.47484 * 58.61541 * 3 2 1 34 34 H 1.09005 * 108.97860 * 318.99215 * 4 2 1 35 35 H 1.08990 * 108.97974 * 200.27617 * 4 2 1 36 36 H 1.00897 * 111.00182 * 333.57482 * 5 4 2 37 37 H 1.09004 * 108.78733 * 37.63325 * 6 5 4 38 38 H 1.09003 * 108.79159 * 155.85412 * 6 5 4 39 39 H 1.09000 * 109.05385 * 181.87492 * 7 6 5 40 40 H 1.08996 * 109.05637 * 300.78170 * 7 6 5 41 41 H 0.96994 * 120.00263 * 95.00091 * 10 8 7 42 42 H 0.97004 * 119.99504 * 0.02562 * 15 13 11 43 43 H 1.08998 * 109.47498 * 300.00800 * 16 15 13 44 44 H 1.09001 * 109.46759 * 60.00341 * 16 15 13 45 45 H 1.08993 * 109.47350 * 300.00324 * 17 16 15 46 46 H 1.09001 * 109.46958 * 60.00452 * 17 16 15 47 47 H 1.09006 * 109.47346 * 300.00467 * 18 17 16 48 48 H 1.09001 * 109.46956 * 60.00338 * 18 17 16 49 49 H 0.97003 * 120.00360 * 179.97438 * 22 21 19 50 50 H 1.09005 * 108.77199 * 213.06749 * 27 8 7 51 51 H 1.08996 * 108.77572 * 331.35609 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0235 1.4481 0.0000 4 6 2.0295 -0.6980 1.2794 5 7 1.9768 -2.1353 1.1661 6 6 3.3045 -2.6465 0.7652 7 6 3.5269 -2.5818 -0.6749 8 6 3.4697 -1.1278 -1.1943 9 1 4.0068 -0.4733 -0.5078 10 7 4.0842 -1.0565 -2.5223 11 6 5.4186 -0.9080 -2.6402 12 8 6.1110 -0.8338 -1.6464 13 6 6.0454 -0.8347 -3.9949 14 8 5.3531 -0.9094 -4.9887 15 7 7.3797 -0.6857 -4.1130 16 6 7.9943 -0.6145 -5.4409 17 6 9.5080 -0.4467 -5.2940 18 6 10.1497 -0.3716 -6.6809 19 6 11.6407 -0.2069 -6.5363 20 1 12.0861 -0.1609 -5.5535 21 6 12.4363 -0.1161 -7.6587 22 7 11.8940 -0.1727 -8.8554 23 14 14.2846 0.0872 -7.4793 24 1 14.6412 0.1220 -6.0383 25 1 14.9737 -1.0548 -8.1321 26 1 14.7080 1.3556 -8.1253 27 6 2.0301 -0.6990 -1.2814 28 1 -0.3634 0.5351 0.8774 29 1 -0.3634 0.4921 -0.9022 30 1 -0.3633 -1.0274 0.0249 31 1 3.1132 1.4607 0.0248 32 1 1.6749 1.9508 -0.9022 33 1 1.6342 1.9647 0.8773 34 1 1.4087 -0.3857 2.1191 35 1 3.0590 -0.3949 1.4696 36 1 1.2661 -2.4205 0.5091 37 1 4.0732 -2.0580 1.2662 38 1 3.3935 -3.6838 1.0880 39 1 4.5061 -3.0029 -0.9030 40 1 2.7613 -3.1705 -1.1801 41 1 3.5308 -1.1161 -3.3166 42 1 7.9332 -0.6264 -3.3185 43 1 7.7823 -1.5323 -5.9891 44 1 7.5851 0.2366 -5.9853 45 1 9.7204 0.4710 -4.7457 46 1 9.9168 -1.2980 -4.7498 47 1 9.9373 -1.2892 -7.2297 48 1 9.7409 0.4800 -7.2248 49 1 12.4538 -0.1084 -9.6451 50 1 1.9186 -0.0132 -2.1214 51 1 1.4125 -1.5785 -1.4630 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884631011.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:24 Heat of formation + Delta-G solvation = -119.923898 kcal Electronic energy + Delta-G solvation = -27803.695749 eV Core-core repulsion = 23928.789481 eV Total energy + Delta-G solvation = -3874.906268 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.01125 -40.88974 -39.48697 -37.25074 -36.33179 -35.77348 -35.19699 -33.06635 -32.34190 -29.38703 -28.90808 -28.20606 -26.48335 -25.95467 -24.58535 -23.38778 -22.39258 -22.05215 -21.47355 -20.08348 -19.14705 -18.53073 -18.10091 -17.27042 -17.12698 -16.87918 -16.58301 -16.38802 -16.15665 -15.94239 -15.54183 -15.33111 -14.96381 -14.80848 -14.30332 -14.10433 -14.09401 -13.99773 -13.78864 -13.54334 -13.38426 -13.19914 -12.92850 -12.80086 -12.79573 -12.57008 -12.49472 -12.38603 -12.11026 -11.91920 -11.82539 -11.72273 -11.60124 -11.55393 -11.34679 -11.23114 -10.72645 -10.56612 -10.38565 -10.29948 -9.35971 -8.20693 -6.31559 0.26162 1.22829 1.40891 1.41523 1.54487 2.05897 2.40390 2.55776 3.13276 3.33637 3.37288 3.49566 3.61169 3.78298 3.95077 4.05968 4.07810 4.10771 4.16021 4.35373 4.44461 4.50459 4.53862 4.59712 4.66355 4.80396 4.84209 4.89084 4.89578 4.92874 4.93695 5.03081 5.08328 5.08799 5.12745 5.13183 5.19784 5.24477 5.31341 5.36370 5.43381 5.50486 5.69203 5.83251 5.85117 6.08052 6.21568 6.29077 6.52248 6.66381 6.85492 6.86919 7.37914 8.91339 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.029715 B = 0.001808 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.066656 B =15481.123993 C =15693.377935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.084 4.084 3 C -0.143 4.143 4 C 0.062 3.938 5 N -0.670 5.670 6 C 0.056 3.944 7 C -0.155 4.155 8 C 0.145 3.855 9 H 0.080 0.920 10 N -0.683 5.683 11 C 0.515 3.485 12 O -0.538 6.538 13 C 0.500 3.500 14 O -0.548 6.548 15 N -0.686 5.686 16 C 0.127 3.873 17 C -0.106 4.106 18 C 0.024 3.976 19 C -0.541 4.541 20 H 0.064 0.936 21 C -0.002 4.002 22 N -0.933 5.933 23 Si 0.965 3.035 24 H -0.261 1.261 25 H -0.279 1.279 26 H -0.279 1.279 27 C -0.121 4.121 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.042 0.958 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.056 0.944 36 H 0.348 0.652 37 H 0.061 0.939 38 H 0.082 0.918 39 H 0.058 0.942 40 H 0.082 0.918 41 H 0.419 0.581 42 H 0.419 0.581 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.066 0.934 46 H 0.067 0.933 47 H -0.003 1.003 48 H -0.003 1.003 49 H 0.263 0.737 50 H 0.078 0.922 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.922 -1.871 21.393 33.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.087 4.087 3 C -0.201 4.201 4 C -0.069 4.069 5 N -0.300 5.300 6 C -0.074 4.074 7 C -0.195 4.195 8 C 0.041 3.959 9 H 0.098 0.902 10 N -0.336 5.336 11 C 0.296 3.704 12 O -0.415 6.415 13 C 0.281 3.719 14 O -0.426 6.426 15 N -0.338 5.338 16 C 0.004 3.996 17 C -0.144 4.144 18 C -0.013 4.013 19 C -0.580 4.580 20 H 0.082 0.918 21 C -0.200 4.200 22 N -0.573 5.573 23 Si 0.790 3.210 24 H -0.185 1.185 25 H -0.205 1.205 26 H -0.205 1.205 27 C -0.159 4.159 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.074 0.926 36 H 0.167 0.833 37 H 0.079 0.921 38 H 0.100 0.900 39 H 0.077 0.923 40 H 0.101 0.899 41 H 0.256 0.744 42 H 0.256 0.744 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.085 0.915 47 H 0.015 0.985 48 H 0.015 0.985 49 H 0.072 0.928 50 H 0.097 0.903 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -25.794 -1.995 21.925 33.912 hybrid contribution 1.288 0.455 -1.597 2.101 sum -24.506 -1.540 20.328 31.877 Atomic orbital electron populations 1.21877 0.92730 1.02461 1.02386 1.21563 0.97063 0.95817 0.94213 1.21924 1.00401 0.95308 1.02469 1.22038 1.01119 0.87516 0.96222 1.61103 1.05766 1.09934 1.53179 1.20867 0.91453 1.02042 0.93031 1.21616 1.03197 0.95886 0.98767 1.20981 0.94711 0.97465 0.82700 0.90217 1.45899 1.05920 1.70809 1.10978 1.19954 0.84071 0.77792 0.88618 1.90759 1.62499 1.49352 1.38846 1.20365 0.83527 0.78237 0.89780 1.90750 1.62430 1.49939 1.39467 1.45890 1.06726 1.70202 1.11023 1.21480 0.93567 1.01890 0.82644 1.21641 0.91511 1.02077 0.99158 1.18941 0.94688 0.95442 0.92260 1.21705 0.93532 1.49719 0.92995 0.91785 1.25985 1.04071 0.94932 0.95008 1.70100 1.37353 1.51510 0.98340 0.85390 0.79204 0.77685 0.78702 1.18468 1.20526 1.20521 1.21797 0.93014 1.02079 0.98996 0.91874 0.92335 0.91824 0.93893 0.92395 0.91600 0.90381 0.92590 0.83270 0.92086 0.89997 0.92340 0.89930 0.74377 0.74372 0.91710 0.91717 0.91482 0.91465 0.98500 0.98501 0.92783 0.90345 0.89659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 8.13 71.98 0.59 -0.31 16 2 C -0.08 -0.73 0.52 -51.38 -0.03 -0.76 16 3 C -0.14 -1.50 8.14 71.98 0.59 -0.91 16 4 C 0.06 0.64 4.77 87.15 0.42 1.05 16 5 N -0.67 -7.12 6.91 -527.68 -3.65 -10.76 16 6 C 0.06 0.69 5.87 83.94 0.49 1.18 16 7 C -0.15 -2.04 4.96 28.92 0.14 -1.89 16 8 C 0.14 2.07 2.07 44.68 0.09 2.17 16 9 H 0.08 1.45 5.87 -2.39 -0.01 1.44 16 10 N -0.68 -12.25 4.99 -445.34 -2.22 -14.48 16 11 C 0.52 12.64 7.79 87.27 0.68 13.32 16 12 O -0.54 -15.13 16.15 -3.25 -0.05 -15.18 16 13 C 0.50 14.33 7.89 87.27 0.69 15.02 16 14 O -0.55 -17.96 16.48 -3.25 -0.05 -18.02 16 15 N -0.69 -19.85 5.55 -464.41 -2.58 -22.43 16 16 C 0.13 4.31 5.67 86.38 0.49 4.80 16 17 C -0.11 -4.06 5.27 30.60 0.16 -3.90 16 18 C 0.02 1.25 4.97 29.85 0.15 1.39 16 19 C -0.54 -30.15 9.11 25.60 0.23 -29.92 16 20 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 21 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 22 N -0.93 -56.39 13.29 21.44 0.28 -56.11 16 23 Si 0.97 43.86 29.54 68.60 2.03 45.88 16 24 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 25 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 26 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 27 C -0.12 -1.14 3.67 30.21 0.11 -1.03 16 28 H 0.06 0.40 8.12 -2.38 -0.02 0.38 16 29 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.06 0.34 7.48 -2.39 -0.02 0.33 16 31 H 0.04 0.57 7.41 -2.39 -0.02 0.55 16 32 H 0.06 0.60 8.06 -2.39 -0.02 0.58 16 33 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.08 0.78 7.96 -2.38 -0.02 0.76 16 35 H 0.06 0.73 6.33 -2.39 -0.02 0.71 16 36 H 0.35 2.85 6.64 -89.70 -0.60 2.26 16 37 H 0.06 0.91 7.24 -2.38 -0.02 0.89 16 38 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.06 1.02 8.06 -2.39 -0.02 1.00 16 40 H 0.08 0.85 7.59 -2.39 -0.02 0.83 16 41 H 0.42 6.59 7.99 -92.71 -0.74 5.85 16 42 H 0.42 10.91 7.94 -92.71 -0.74 10.17 16 43 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 45 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 46 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 47 H 0.00 -0.19 8.14 -2.38 -0.02 -0.21 16 48 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 49 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 50 H 0.08 0.77 7.67 -2.38 -0.02 0.75 16 51 H 0.08 0.59 6.61 -2.39 -0.02 0.57 16 Total: -1.00 -66.89 398.82 -2.11 -69.00 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: -1.13 Total: 21.53 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: 5.26 Total: 0.57 kcal Atomic # 7 Polarization: -95.62 SS G_CDS: -8.16 Total: -103.78 kcal Atomic # 8 Polarization: -33.09 SS G_CDS: -0.11 Total: -33.20 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Total: -66.89 -2.11 -69.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884631011.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.928 kcal (2) G-P(sol) polarization free energy of solvation -66.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds