Wall clock time and date at job start Fri Apr 10 2020 18:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99866 * 2 1 4 4 H 1.48505 * 109.47107 * 90.00137 * 3 2 1 5 5 H 1.48504 * 109.46940 * 209.99818 * 3 2 1 6 6 H 1.48496 * 109.47101 * 330.00370 * 3 2 1 7 7 C 1.37880 * 120.00139 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99644 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99906 * 179.97438 * 7 2 1 10 10 C 1.53007 * 109.47081 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47051 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.46986 * 179.97438 * 11 10 9 13 13 C 1.34776 * 120.00124 * 179.97438 * 12 11 10 14 14 O 1.21587 * 119.99498 * 0.02562 * 13 12 11 15 15 N 1.34774 * 120.00054 * 180.02562 * 13 12 11 16 16 C 1.48191 * 126.41994 * 0.02562 * 15 13 12 17 17 C 1.55340 * 107.02465 * 174.86510 * 16 15 13 18 18 C 1.53575 * 101.79299 * 337.57479 * 17 16 15 19 19 H 1.09005 * 110.89596 * 281.80169 * 18 17 16 20 20 C 1.45440 * 126.42244 * 179.71551 * 15 13 12 21 21 H 1.08998 * 109.53232 * 93.61781 * 20 15 13 22 22 C 1.51630 * 117.44478 * 328.84297 * 20 15 13 23 23 C 1.53894 * 106.97169 * 181.13423 * 22 20 15 24 24 C 1.52592 * 111.19288 * 55.00820 * 23 22 20 25 25 N 1.45632 * 115.87151 * 153.71660 * 18 17 16 26 26 C 1.46902 * 110.99380 * 60.34556 * 25 18 17 27 27 C 1.52999 * 109.46769 * 176.16148 * 26 25 18 28 28 O 1.42904 * 109.47205 * 62.79322 * 27 26 25 29 29 H 0.96998 * 120.00269 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47670 * 300.00305 * 9 7 2 31 31 H 1.08998 * 109.47201 * 60.00750 * 9 7 2 32 32 H 1.09000 * 109.46867 * 300.00490 * 10 9 7 33 33 H 1.08998 * 109.46741 * 60.00163 * 10 9 7 34 34 H 1.09000 * 109.47503 * 299.99878 * 11 10 9 35 35 H 1.08998 * 109.47397 * 60.00342 * 11 10 9 36 36 H 0.97000 * 119.99781 * 0.02562 * 12 11 10 37 37 H 1.08996 * 109.92680 * 294.20475 * 16 15 13 38 38 H 1.09000 * 109.92501 * 55.52188 * 16 15 13 39 39 H 1.08996 * 110.96418 * 95.69764 * 17 16 15 40 40 H 1.09000 * 110.96337 * 219.45006 * 17 16 15 41 41 H 1.09002 * 109.94803 * 300.49455 * 22 20 15 42 42 H 1.08992 * 109.95211 * 61.76901 * 22 20 15 43 43 H 1.09000 * 109.13298 * 175.44919 * 23 22 20 44 44 H 1.08998 * 109.13206 * 294.56498 * 23 22 20 45 45 H 1.08994 * 109.03118 * 66.90885 * 24 23 22 46 46 H 1.09000 * 109.02669 * 185.74885 * 24 23 22 47 47 H 1.09001 * 109.47062 * 296.15912 * 26 25 18 48 48 H 1.09000 * 109.47798 * 56.16354 * 26 25 18 49 49 H 1.08998 * 109.47715 * 182.79059 * 27 26 25 50 50 H 1.09001 * 109.47422 * 302.79815 * 27 26 25 51 51 H 0.96704 * 114.00277 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6365 0.0001 11 6 5.5516 -2.6365 0.0001 12 7 6.0399 -4.0177 0.0009 13 6 7.3650 -4.2640 0.0005 14 8 8.1550 -3.3398 0.0001 15 7 7.8143 -5.5347 0.0007 16 6 6.9833 -6.7617 0.0007 17 6 7.9531 -7.9678 -0.1320 18 6 9.1873 -7.3098 -0.7664 19 1 9.0380 -7.1521 -1.8346 20 6 9.2055 -5.9587 -0.0055 21 1 9.5403 -6.1250 1.0184 22 6 10.2062 -5.0623 -0.7084 23 6 11.5799 -5.7465 -0.5942 24 6 11.5339 -7.1707 -1.1401 25 7 10.4620 -7.9624 -0.5017 26 6 10.4626 -9.3413 -1.0085 27 6 11.8457 -9.9611 -0.7986 28 8 12.1316 -10.0254 0.6001 29 1 -0.4850 0.8400 0.0004 30 1 3.8746 -0.6807 -0.8905 31 1 3.8752 -0.6797 0.8895 32 1 3.6585 -3.1502 0.8903 33 1 3.6579 -3.1505 -0.8897 34 1 5.9150 -2.1227 -0.8899 35 1 5.9149 -2.1226 0.8901 36 1 5.4096 -4.7550 0.0009 37 1 6.4270 -6.8336 0.9352 38 1 6.2948 -6.7440 -0.8441 39 1 8.1930 -8.3848 0.8460 40 1 7.5376 -8.7319 -0.7890 41 1 9.9325 -4.9503 -1.7575 42 1 10.2354 -4.0862 -0.2243 43 1 12.3137 -5.1710 -1.1586 44 1 11.8789 -5.7748 0.4536 45 1 11.3637 -7.1336 -2.2160 46 1 12.4915 -7.6553 -0.9497 47 1 9.7168 -9.9264 -0.4705 48 1 10.2237 -9.3377 -2.0720 49 1 11.8609 -10.9665 -1.2191 50 1 12.5977 -9.3480 -1.2953 51 1 12.9946 -10.4089 0.8079 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892794604.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:38 Heat of formation + Delta-G solvation = -100.704812 kcal Electronic energy + Delta-G solvation = -28302.840112 eV Core-core repulsion = 24428.767246 eV Total energy + Delta-G solvation = -3874.072866 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.92470 -40.23162 -38.10128 -36.98199 -36.67806 -35.18156 -34.57447 -33.38193 -31.89183 -29.98386 -29.39917 -28.64863 -25.53259 -24.90290 -24.02650 -22.55021 -22.42446 -22.19163 -21.00516 -20.59196 -19.04668 -18.61693 -18.26134 -17.56014 -17.04684 -16.80959 -16.37168 -16.31120 -15.81803 -15.79670 -15.47153 -15.19367 -15.01107 -14.80813 -14.68155 -14.44743 -14.21113 -13.83679 -13.80736 -13.66575 -13.32485 -13.12500 -12.99265 -12.74765 -12.69769 -12.44929 -12.27013 -11.91205 -11.86422 -11.80895 -11.77295 -11.65394 -11.59651 -11.38819 -11.32755 -10.87963 -10.76005 -10.72209 -10.21706 -9.52014 -9.35579 -8.29260 -6.32930 1.36993 1.38389 1.50399 1.52702 2.10096 2.36458 2.80073 2.97866 3.06392 3.39488 3.49253 3.63946 3.85796 3.98204 4.04063 4.09111 4.15847 4.20988 4.27697 4.30655 4.31879 4.33329 4.50188 4.51082 4.55975 4.58639 4.70634 4.76200 4.84728 4.86482 4.89623 4.89900 4.96991 5.01900 5.03389 5.05118 5.14292 5.18868 5.27792 5.37224 5.43690 5.52967 5.55799 5.65466 6.00832 6.08376 6.12361 6.27665 6.74670 6.95399 7.02790 7.31726 7.54175 8.87004 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.032806 B = 0.002033 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.304465 B =13768.025956 C =14397.542680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.005 3.995 3 Si 0.946 3.054 4 H -0.268 1.268 5 H -0.249 1.249 6 H -0.284 1.284 7 C -0.530 4.530 8 H 0.038 0.962 9 C -0.012 4.012 10 C -0.098 4.098 11 C 0.148 3.852 12 N -0.731 5.731 13 C 0.716 3.284 14 O -0.628 6.628 15 N -0.634 5.634 16 C 0.095 3.905 17 C -0.108 4.108 18 C 0.068 3.932 19 H 0.054 0.946 20 C 0.155 3.845 21 H 0.063 0.937 22 C -0.117 4.117 23 C -0.107 4.107 24 C 0.048 3.952 25 N -0.510 5.510 26 C 0.046 3.954 27 C 0.075 3.925 28 O -0.583 6.583 29 H 0.266 0.734 30 H 0.021 0.979 31 H 0.019 0.981 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.408 0.592 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.106 0.894 41 H 0.050 0.950 42 H 0.057 0.943 43 H 0.083 0.917 44 H 0.065 0.935 45 H 0.038 0.962 46 H 0.093 0.907 47 H 0.085 0.915 48 H 0.060 0.940 49 H 0.066 0.934 50 H 0.054 0.946 51 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.691 -25.268 -3.585 37.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.192 4.192 3 Si 0.770 3.230 4 H -0.193 1.193 5 H -0.172 1.172 6 H -0.210 1.210 7 C -0.568 4.568 8 H 0.057 0.943 9 C -0.050 4.050 10 C -0.136 4.136 11 C 0.024 3.976 12 N -0.387 5.387 13 C 0.417 3.583 14 O -0.510 6.510 15 N -0.371 5.371 16 C -0.027 4.027 17 C -0.146 4.146 18 C -0.042 4.042 19 H 0.072 0.928 20 C 0.050 3.950 21 H 0.080 0.920 22 C -0.155 4.155 23 C -0.146 4.146 24 C -0.080 4.080 25 N -0.235 5.235 26 C -0.081 4.081 27 C -0.003 4.003 28 O -0.390 6.390 29 H 0.075 0.925 30 H 0.039 0.961 31 H 0.038 0.962 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.244 0.756 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.124 0.876 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.101 0.899 44 H 0.083 0.917 45 H 0.057 0.943 46 H 0.111 0.889 47 H 0.104 0.896 48 H 0.078 0.922 49 H 0.084 0.916 50 H 0.072 0.928 51 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 27.569 -24.164 -3.011 36.784 hybrid contribution -0.240 0.607 -0.832 1.057 sum 27.329 -23.557 -3.842 36.285 Atomic orbital electron populations 1.70053 1.08152 1.28107 1.52688 1.25973 0.95606 1.03385 0.94251 0.85710 0.79511 0.78584 0.79182 1.19273 1.17225 1.20953 1.21450 0.91814 0.93290 1.50223 0.94331 1.19463 0.94134 0.94558 0.96828 1.21466 0.91802 0.98186 1.02136 1.21147 0.94104 0.81295 1.01092 1.45077 1.04827 1.09522 1.79265 1.15632 0.82763 0.82023 0.77843 1.90860 1.55945 1.43893 1.60284 1.47285 1.08398 1.03697 1.77757 1.22664 0.94294 0.82589 1.03151 1.22480 0.92954 0.96219 1.02981 1.22490 0.90967 0.93410 0.97307 0.92826 1.21121 0.80648 0.93851 0.99352 0.91951 1.21598 0.95235 0.99041 0.99665 1.21551 0.95679 0.95010 1.02331 1.22308 0.96117 0.93430 0.96099 1.62781 1.01876 1.01977 1.56846 1.22318 0.98322 0.88701 0.98797 1.22322 0.95725 0.99669 0.82560 1.86578 1.42010 1.86500 1.23931 0.92512 0.96076 0.96216 0.91745 0.91702 0.92757 0.92767 0.75619 0.89995 0.89860 0.89372 0.87583 0.93078 0.92415 0.89867 0.91669 0.94344 0.88879 0.89641 0.92187 0.91584 0.92754 0.76104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.63 13.96 21.45 0.30 -59.33 16 2 C 0.00 0.28 5.47 84.66 0.46 0.74 16 3 Si 0.95 44.95 27.47 68.60 1.88 46.83 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.25 -11.10 6.54 99.48 0.65 -10.45 16 6 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 7 C -0.53 -30.37 9.66 25.60 0.25 -30.13 16 8 H 0.04 2.39 7.99 -2.91 -0.02 2.37 16 9 C -0.01 -0.55 4.04 29.85 0.12 -0.43 16 10 C -0.10 -3.64 5.27 30.60 0.16 -3.48 16 11 C 0.15 5.02 5.67 86.38 0.49 5.51 16 12 N -0.73 -21.20 5.52 -478.53 -2.64 -23.84 16 13 C 0.72 22.74 8.42 179.06 1.51 24.25 16 14 O -0.63 -25.01 14.56 -3.99 -0.06 -25.06 16 15 N -0.63 -15.37 3.28 -807.79 -2.65 -18.02 16 16 C 0.10 1.48 6.31 86.86 0.55 2.03 16 17 C -0.11 -1.32 5.84 31.59 0.18 -1.13 16 18 C 0.07 1.08 2.09 46.06 0.10 1.18 16 19 H 0.05 0.90 8.07 -2.38 -0.02 0.88 16 20 C 0.16 3.49 2.64 45.45 0.12 3.61 16 21 H 0.06 1.58 8.12 -2.39 -0.02 1.56 16 22 C -0.12 -2.77 5.03 30.45 0.15 -2.62 16 23 C -0.11 -1.81 5.98 30.76 0.18 -1.63 16 24 C 0.05 0.64 4.93 86.00 0.42 1.06 16 25 N -0.51 -7.34 4.73 -867.26 -4.10 -11.45 16 26 C 0.05 0.46 5.19 86.30 0.45 0.91 16 27 C 0.08 0.58 6.79 71.98 0.49 1.07 16 28 O -0.58 -6.70 13.57 -148.98 -2.02 -8.72 16 29 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 30 H 0.02 0.97 7.20 -2.39 -0.02 0.96 16 31 H 0.02 0.90 7.57 -2.39 -0.02 0.88 16 32 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.41 9.48 7.49 -92.71 -0.69 8.78 16 37 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.08 1.09 8.10 -2.39 -0.02 1.08 16 39 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.05 1.27 8.13 -2.39 -0.02 1.25 16 42 H 0.06 1.75 6.67 -2.39 -0.02 1.74 16 43 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.04 0.48 8.11 -2.39 -0.02 0.46 16 46 H 0.09 1.01 5.99 -2.39 -0.01 1.00 16 47 H 0.09 0.89 7.58 -2.39 -0.02 0.87 16 48 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 49 H 0.07 0.27 8.14 -2.39 -0.02 0.26 16 50 H 0.05 0.33 6.10 -2.39 -0.01 0.32 16 51 H 0.39 1.18 9.12 -74.05 -0.68 0.51 16 Total: -1.00 -76.98 391.27 -4.17 -81.15 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -0.51 Total: 17.51 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: 5.64 Total: 0.94 kcal Atomic # 7 Polarization: -103.54 SS G_CDS: -9.10 Total: -112.64 kcal Atomic # 8 Polarization: -31.71 SS G_CDS: -2.08 Total: -33.79 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.88 Total: 46.83 kcal Total: -76.98 -4.17 -81.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892794604.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.559 kcal (2) G-P(sol) polarization free energy of solvation -76.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds