Wall clock time and date at job start Fri Apr 10 2020 18:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46900 * 110.99732 * 2 1 4 4 C 1.46898 * 111.00237 * 123.95455 * 2 1 3 5 5 C 1.53001 * 109.46828 * 75.63509 * 4 2 1 6 6 O 1.42899 * 109.46952 * 63.91905 * 5 4 2 7 7 C 1.42903 * 113.99995 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47246 * 179.97438 * 7 6 5 9 9 O 1.21283 * 119.99821 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00134 * 179.97438 * 8 7 6 11 11 C 1.48242 * 126.41172 * 359.70130 * 10 8 7 12 12 C 1.53750 * 105.90114 * 211.08214 * 11 10 8 13 13 H 1.08996 * 112.28424 * 104.65028 * 12 11 10 14 14 C 1.54453 * 109.01419 * 229.74831 * 12 11 10 15 15 N 1.48336 * 104.32361 * 137.92492 * 14 12 11 16 16 C 1.36934 * 128.19671 * 138.19179 * 15 14 12 17 17 H 1.07997 * 120.00102 * 344.30703 * 16 15 14 18 18 C 1.38817 * 119.99554 * 164.30885 * 16 15 14 19 19 N 1.31613 * 120.00386 * 350.72660 * 18 16 15 20 20 Si 1.86802 * 119.99601 * 170.73140 * 18 16 15 21 21 H 1.48504 * 109.47349 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47058 * 120.00001 * 20 18 16 23 23 H 1.48504 * 109.47022 * 239.99907 * 20 18 16 24 24 C 1.48330 * 103.60234 * 318.19134 * 15 14 12 25 25 C 1.54456 * 104.32617 * 41.80861 * 24 15 14 26 26 C 1.52997 * 112.29978 * 96.98622 * 25 24 15 27 27 C 1.47192 * 126.70378 * 179.97438 * 10 8 7 28 28 H 1.09002 * 109.46744 * 296.04350 * 1 2 3 29 29 H 1.09004 * 109.47302 * 56.04019 * 1 2 3 30 30 H 1.08998 * 109.47317 * 176.04600 * 1 2 3 31 31 H 1.09007 * 109.47235 * 185.04898 * 3 2 1 32 32 H 1.08995 * 109.47838 * 305.05389 * 3 2 1 33 33 H 1.09004 * 109.47011 * 65.05738 * 3 2 1 34 34 H 1.09000 * 109.47013 * 315.64052 * 4 2 1 35 35 H 1.09002 * 109.47235 * 195.63299 * 4 2 1 36 36 H 1.09000 * 109.47134 * 303.92338 * 5 4 2 37 37 H 1.08998 * 109.47301 * 183.92153 * 5 4 2 38 38 H 1.08999 * 109.46914 * 60.00270 * 7 6 5 39 39 H 1.08999 * 109.47175 * 299.99833 * 7 6 5 40 40 H 1.09002 * 109.59804 * 92.39650 * 11 10 8 41 41 H 1.08998 * 111.04824 * 330.53762 * 11 10 8 42 42 H 1.09000 * 110.46023 * 256.63513 * 14 12 11 43 43 H 1.08996 * 110.46413 * 19.08760 * 14 12 11 44 44 H 0.96998 * 120.00615 * 179.97438 * 19 18 16 45 45 H 1.09004 * 110.46367 * 160.52041 * 24 15 14 46 46 H 1.09004 * 110.46529 * 282.97088 * 24 15 14 47 47 H 1.09008 * 109.46966 * 302.34946 * 26 25 24 48 48 H 1.09001 * 109.47411 * 62.34860 * 26 25 24 49 49 H 1.08996 * 109.47536 * 182.35531 * 26 25 24 50 50 H 1.09000 * 110.06622 * 29.39389 * 27 10 8 51 51 H 1.09004 * 110.06530 * 267.87622 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.8441 -2.2627 0.8583 6 8 2.6455 -2.6202 -0.2695 7 6 2.5761 -4.0047 -0.6164 8 6 3.4542 -4.2675 -1.8126 9 8 4.0783 -3.3587 -2.3181 10 7 3.5467 -5.5127 -2.3202 11 6 2.8565 -6.7229 -1.8136 12 6 3.7943 -7.9021 -2.1202 13 1 4.3097 -8.2626 -1.2301 14 6 2.9882 -9.0167 -2.8226 15 7 3.8854 -9.4930 -3.9035 16 6 4.1228 -10.7819 -4.3004 17 1 3.8371 -11.6049 -3.6621 18 6 4.7308 -11.0306 -5.5233 19 7 4.9134 -10.0478 -6.3795 20 14 5.2897 -12.7603 -5.9538 21 1 4.9710 -13.6776 -4.8303 22 1 4.5867 -13.2170 -7.1796 23 1 6.7552 -12.7616 -6.1941 24 6 4.4644 -8.2427 -4.4526 25 6 4.7773 -7.3866 -3.2056 26 6 6.2398 -7.5052 -2.7721 27 6 4.3538 -5.9335 -3.4769 28 1 -0.3633 0.4512 0.9234 29 1 -0.3634 0.5741 -0.8524 30 1 -0.3634 -1.0252 -0.0709 31 1 3.0813 1.3439 -0.0904 32 1 1.5746 1.9222 -0.8412 33 1 1.7210 1.8659 0.9318 34 1 1.4398 -0.5065 2.0386 35 1 3.0496 -0.5276 1.2794 36 1 0.7989 -2.4891 0.6477 37 1 2.1702 -2.8297 1.7302 38 1 1.5462 -4.2677 -0.8574 39 1 2.9178 -4.6076 0.2250 40 1 1.9103 -6.8512 -2.3393 41 1 2.6820 -6.6535 -0.7399 42 1 2.7688 -9.8253 -2.1254 43 1 2.0654 -8.6142 -3.2404 44 1 5.3386 -10.2215 -7.2339 45 1 5.3783 -8.4571 -5.0067 46 1 3.7415 -7.7369 -5.0928 47 1 6.4762 -8.5506 -2.5732 48 1 6.8858 -7.1314 -3.5666 49 1 6.3994 -6.9183 -1.8677 50 1 5.2348 -5.2983 -3.5691 51 1 3.7575 -5.8814 -4.3878 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101431563.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:33 Heat of formation + Delta-G solvation = -32.488237 kcal Electronic energy + Delta-G solvation = -28508.643271 eV Core-core repulsion = 24637.528498 eV Total energy + Delta-G solvation = -3871.114773 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.19507 -38.82905 -37.99849 -36.65255 -34.90479 -32.55091 -31.41518 -30.57212 -29.57444 -28.12880 -27.86111 -26.24929 -25.20655 -25.00562 -24.20906 -22.37269 -21.34679 -20.55381 -19.23024 -18.40269 -17.27228 -16.79254 -16.73248 -16.29859 -15.76220 -15.58735 -15.12533 -14.91275 -14.85304 -14.58797 -14.25017 -13.73167 -13.63578 -13.28462 -13.02744 -12.77108 -12.73214 -12.55977 -12.40197 -12.23801 -12.11098 -11.97385 -11.70689 -11.65240 -11.50250 -11.37332 -11.16026 -10.91180 -10.79847 -10.73096 -10.14609 -10.02475 -9.96187 -9.86664 -9.80075 -9.63392 -9.45166 -8.70734 -8.58518 -8.42831 -6.88663 -5.81160 -3.16187 2.78292 2.79237 3.36190 3.42417 3.44722 3.63063 3.82417 4.43869 4.52693 4.75074 4.75607 4.89055 4.92017 4.98662 5.02372 5.05739 5.09128 5.13756 5.15225 5.24407 5.28809 5.33813 5.42373 5.52336 5.56919 5.62118 5.63268 5.65058 5.67481 5.72630 5.94418 6.06558 6.13868 6.23691 6.29383 6.33781 6.48650 6.64474 6.69286 6.71890 6.73743 6.77214 6.93434 7.02354 7.27564 7.52042 7.70456 7.73827 8.18351 8.36637 9.07809 9.71330 10.49184 11.32445 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.034928 B = 0.002186 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.460976 B =12808.096542 C =12994.967324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.538 5.538 3 C 0.027 3.973 4 C 0.057 3.943 5 C 0.066 3.934 6 O -0.346 6.346 7 C 0.049 3.951 8 C 0.529 3.471 9 O -0.525 6.525 10 N -0.616 5.616 11 C 0.105 3.895 12 C -0.110 4.110 13 H 0.084 0.916 14 C 0.131 3.869 15 N -0.593 5.593 16 C -0.225 4.225 17 H 0.076 0.924 18 C -0.005 4.005 19 N -0.913 5.913 20 Si 0.910 3.090 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.289 1.289 24 C 0.166 3.834 25 C -0.094 4.094 26 C -0.117 4.117 27 C 0.121 3.879 28 H 0.023 0.977 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.021 0.979 34 H 0.051 0.949 35 H 0.084 0.916 36 H 0.050 0.950 37 H 0.053 0.947 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.048 0.952 43 H 0.027 0.973 44 H 0.254 0.746 45 H 0.092 0.908 46 H 0.024 0.976 47 H 0.063 0.937 48 H 0.053 0.947 49 H 0.041 0.959 50 H 0.074 0.926 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.578 15.673 16.440 23.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.262 5.262 3 C -0.121 4.121 4 C -0.072 4.072 5 C -0.012 4.012 6 O -0.264 6.264 7 C -0.031 4.031 8 C 0.316 3.684 9 O -0.400 6.400 10 N -0.352 5.352 11 C -0.018 4.018 12 C -0.131 4.131 13 H 0.102 0.898 14 C 0.004 3.996 15 N -0.316 5.316 16 C -0.353 4.353 17 H 0.094 0.906 18 C -0.202 4.202 19 N -0.559 5.559 20 Si 0.741 3.259 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.216 1.216 24 C 0.040 3.960 25 C -0.097 4.097 26 C -0.174 4.174 27 C -0.001 4.001 28 H 0.041 0.959 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.040 0.960 34 H 0.069 0.931 35 H 0.102 0.898 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.067 0.933 43 H 0.045 0.955 44 H 0.064 0.936 45 H 0.110 0.890 46 H 0.042 0.958 47 H 0.082 0.918 48 H 0.072 0.928 49 H 0.060 0.940 50 H 0.093 0.907 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.893 16.007 15.457 23.295 hybrid contribution -0.326 -0.747 0.630 1.030 sum -7.220 15.261 16.087 23.320 Atomic orbital electron populations 1.22452 0.87515 1.02281 1.00308 1.61852 1.07604 1.13811 1.42913 1.22384 1.01198 0.88465 1.00083 1.22154 1.01362 0.92342 0.91299 1.22557 0.94749 0.95223 0.88636 1.88117 1.67587 1.22229 1.48423 1.22141 0.99445 0.85174 0.96314 1.19782 0.82671 0.81353 0.84576 1.90724 1.45533 1.42696 1.61079 1.48850 1.47319 1.06975 1.32038 1.22501 0.96240 0.84200 0.98840 1.23084 0.96261 0.95139 0.98602 0.89770 1.21855 0.92365 0.93964 0.91401 1.45059 1.46884 1.02071 1.37592 1.19007 1.34981 0.81602 0.99750 0.90581 1.24890 1.02213 0.97637 0.95502 1.69883 1.47526 1.30307 1.08219 0.86081 0.78209 0.83653 0.77989 1.20407 1.21748 1.21633 1.21791 0.99428 0.84657 0.90135 1.22541 0.95003 0.93334 0.98795 1.21539 0.94231 1.01851 0.99770 1.22198 0.95137 0.95086 0.87682 0.95897 0.91269 0.91381 0.91074 0.91328 0.96001 0.93065 0.89798 0.93216 0.92891 0.90646 0.90760 0.90899 0.91124 0.93319 0.95532 0.93584 0.88982 0.95764 0.91833 0.92800 0.94017 0.90722 0.91067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.40 60.06 0.56 0.74 16 2 N -0.54 -5.33 4.88 -251.25 -1.23 -6.56 16 3 C 0.03 0.22 9.51 60.06 0.57 0.79 16 4 C 0.06 0.48 5.39 -3.82 -0.02 0.46 16 5 C 0.07 0.59 6.12 37.16 0.23 0.82 16 6 O -0.35 -4.65 9.81 -55.14 -0.54 -5.19 16 7 C 0.05 0.59 5.41 36.01 0.19 0.78 16 8 C 0.53 8.54 7.95 -10.98 -0.09 8.46 16 9 O -0.52 -10.75 16.73 -14.35 -0.24 -10.99 16 10 N -0.62 -9.52 3.34 -170.78 -0.57 -10.09 16 11 C 0.11 1.38 6.42 -2.69 -0.02 1.36 16 12 C -0.11 -1.76 3.71 -88.28 -0.33 -2.08 16 13 H 0.08 1.28 7.93 -51.93 -0.41 0.87 16 14 C 0.13 2.48 6.76 -2.27 -0.02 2.47 16 15 N -0.59 -14.30 3.37 -168.47 -0.57 -14.87 16 16 C -0.23 -6.01 10.37 -15.06 -0.16 -6.17 16 17 H 0.08 1.97 7.85 -52.49 -0.41 1.56 16 18 C -0.01 -0.14 5.40 -17.43 -0.09 -0.24 16 19 N -0.91 -26.09 10.87 55.49 0.60 -25.49 16 20 Si 0.91 21.47 29.56 -169.99 -5.03 16.44 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 C 0.17 3.77 5.11 -2.27 -0.01 3.76 16 25 C -0.09 -1.69 1.08 -152.16 -0.16 -1.85 16 26 C -0.12 -2.00 8.61 37.16 0.32 -1.68 16 27 C 0.12 2.08 6.24 -3.27 -0.02 2.06 16 28 H 0.02 0.15 8.09 -51.93 -0.42 -0.27 16 29 H 0.07 0.51 8.11 -51.93 -0.42 0.09 16 30 H 0.07 0.52 6.81 -51.93 -0.35 0.16 16 31 H 0.07 0.61 8.09 -51.92 -0.42 0.19 16 32 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 33 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 34 H 0.05 0.33 7.96 -51.93 -0.41 -0.08 16 35 H 0.08 0.75 7.91 -51.93 -0.41 0.34 16 36 H 0.05 0.40 6.81 -51.93 -0.35 0.04 16 37 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.70 7.87 -51.93 -0.41 0.30 16 40 H 0.07 0.93 7.11 -51.93 -0.37 0.56 16 41 H 0.07 0.71 7.38 -51.93 -0.38 0.33 16 42 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.03 0.50 7.17 -51.93 -0.37 0.13 16 44 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 45 H 0.09 2.37 6.21 -51.93 -0.32 2.05 16 46 H 0.02 0.59 7.17 -51.93 -0.37 0.21 16 47 H 0.06 1.17 8.14 -51.92 -0.42 0.74 16 48 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 49 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.07 1.32 7.63 -51.93 -0.40 0.93 16 51 H 0.07 1.27 7.11 -51.93 -0.37 0.91 16 LS Contribution 397.98 15.07 6.00 6.00 Total: -1.00 -33.27 397.98 -9.73 -43.00 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -9.12 Total: -1.96 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: 0.96 Total: 9.70 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: -1.76 Total: -57.00 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.78 Total: -16.18 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.44 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.27 -9.73 -43.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101431563.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.515 kcal (2) G-P(sol) polarization free energy of solvation -33.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds