Wall clock time and date at job start Fri Apr 10 2020 18:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46895 * 110.99907 * 2 1 4 4 C 1.46903 * 110.99684 * 123.95242 * 2 1 3 5 5 C 1.50704 * 112.84904 * 300.77153 * 4 2 1 6 6 O 1.21277 * 119.99909 * 354.28468 * 5 4 2 7 7 N 1.34771 * 119.99641 * 174.28968 * 5 4 2 8 8 C 1.46497 * 119.99837 * 184.69793 * 7 5 4 9 9 C 1.53006 * 109.47445 * 179.97438 * 8 7 5 10 10 C 1.53006 * 109.54934 * 60.12919 * 9 8 7 11 11 C 1.53296 * 109.51486 * 180.25371 * 9 8 7 12 12 N 1.47225 * 108.40270 * 172.23352 * 11 9 8 13 13 C 1.36937 * 121.03266 * 129.46381 * 12 11 9 14 14 H 1.07999 * 120.00247 * 209.83252 * 13 12 11 15 15 C 1.38819 * 119.99693 * 29.82514 * 13 12 11 16 16 N 1.31619 * 119.99872 * 9.79224 * 15 13 12 17 17 Si 1.86799 * 119.99736 * 189.79279 * 15 13 12 18 18 H 1.48500 * 109.47084 * 90.00191 * 17 15 13 19 19 H 1.48503 * 109.47229 * 210.00037 * 17 15 13 20 20 H 1.48500 * 109.47530 * 329.99889 * 17 15 13 21 21 C 1.47151 * 117.98646 * 309.48403 * 12 11 9 22 22 C 1.53292 * 108.41457 * 50.52382 * 21 12 11 23 23 O 1.42956 * 109.51152 * 300.00454 * 9 8 7 24 24 C 1.53784 * 113.61400 * 71.96985 * 4 2 1 25 25 C 1.53955 * 87.01579 * 89.22751 * 24 4 2 26 26 C 1.53773 * 87.11617 * 25.36418 * 25 24 4 27 27 H 1.09001 * 109.46956 * 302.33772 * 1 2 3 28 28 H 1.08999 * 109.47320 * 62.33625 * 1 2 3 29 29 H 1.08999 * 109.47100 * 182.33659 * 1 2 3 30 30 H 1.09006 * 109.47307 * 183.95114 * 3 2 1 31 31 H 1.08998 * 109.47479 * 303.94966 * 3 2 1 32 32 H 1.09003 * 109.47370 * 63.95252 * 3 2 1 33 33 H 0.96999 * 120.00427 * 4.69761 * 7 5 4 34 34 H 1.09006 * 109.47129 * 59.99933 * 8 7 5 35 35 H 1.08995 * 109.47423 * 299.99907 * 8 7 5 36 36 H 1.08998 * 109.46816 * 299.87182 * 10 9 8 37 37 H 1.08992 * 109.47113 * 59.87156 * 10 9 8 38 38 H 1.09001 * 109.47156 * 179.87656 * 10 9 8 39 39 H 1.09005 * 109.67926 * 291.95384 * 11 9 8 40 40 H 1.08997 * 109.68097 * 52.50694 * 11 9 8 41 41 H 0.97002 * 119.99506 * 180.02562 * 16 15 13 42 42 H 1.08997 * 109.68450 * 290.77866 * 21 12 11 43 43 H 1.09000 * 109.68059 * 170.26295 * 21 12 11 44 44 H 1.09000 * 109.51519 * 67.60124 * 22 21 12 45 45 H 1.09006 * 109.51388 * 187.70143 * 22 21 12 46 46 H 1.08996 * 113.61066 * 203.74315 * 24 4 2 47 47 H 1.09001 * 113.61249 * 334.65134 * 24 4 2 48 48 H 1.09001 * 113.53693 * 270.80636 * 25 24 4 49 49 H 1.08999 * 113.66330 * 139.93669 * 25 24 4 50 50 H 1.09006 * 113.61260 * 220.09063 * 26 25 24 51 51 H 1.08994 * 113.69623 * 89.19398 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 1.5417 -0.2235 2.4685 6 8 0.9042 0.8070 2.5177 7 7 1.8446 -0.8835 3.6038 8 6 1.3174 -0.4134 4.8872 9 6 1.8074 -1.3331 6.0076 10 6 3.3368 -1.3163 6.0517 11 6 1.2511 -0.8457 7.3503 12 7 1.5786 -1.8459 8.3797 13 6 2.1756 -1.4787 9.5562 14 1 2.8276 -2.1698 10.0696 15 6 1.9428 -0.2181 10.0887 16 7 1.0067 0.5510 9.5743 17 14 2.9582 0.3868 11.5352 18 1 4.1633 1.0942 11.0327 19 1 2.1440 1.3183 12.3566 20 1 3.3746 -0.7712 12.3665 21 6 1.2455 -3.2529 8.1062 22 6 1.8022 -3.6230 6.7267 23 8 1.3513 -2.6660 5.7650 24 6 1.8089 -2.2859 0.9960 25 6 3.1742 -2.3060 0.2848 26 6 3.5099 -1.0213 1.0604 27 1 -0.3633 0.5497 0.8683 28 1 -0.3634 0.4771 -0.9102 29 1 -0.3633 -1.0268 0.0419 30 1 3.0828 1.3432 -0.0708 31 1 1.5899 1.9163 -0.8524 32 1 1.7043 1.8724 0.9233 33 1 2.4117 -1.6698 3.5712 34 1 0.2278 -0.4250 4.8586 35 1 1.6652 0.6028 5.0726 36 1 3.7316 -1.6672 5.0983 37 1 3.6838 -0.2998 6.2366 38 1 3.6844 -1.9701 6.8516 39 1 1.7050 0.1107 7.6103 40 1 0.1693 -0.7321 7.2800 41 1 0.8443 1.4320 9.9463 42 1 0.1632 -3.3817 8.1120 43 1 1.6952 -3.8911 8.8668 44 1 2.8916 -3.6194 6.7608 45 1 1.4500 -4.6157 6.4463 46 1 1.8050 -2.8159 1.9484 47 1 0.9756 -2.5653 0.3514 48 1 3.1057 -2.1600 -0.7932 49 1 3.7978 -3.1570 0.5588 50 1 4.0478 -0.2814 0.4676 51 1 3.9720 -1.2035 2.0306 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107993368.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:45 Heat of formation + Delta-G solvation = -18.451470 kcal Electronic energy + Delta-G solvation = -30156.508509 eV Core-core repulsion = 26286.002415 eV Total energy + Delta-G solvation = -3870.506093 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.99746 -39.18016 -37.73202 -35.64489 -34.56863 -34.14732 -31.67441 -31.28192 -28.05056 -27.98413 -27.34618 -26.22271 -25.40993 -25.18337 -23.25169 -22.92115 -21.39738 -20.85542 -19.14680 -18.55026 -17.61470 -16.96996 -16.35615 -15.84123 -15.45437 -15.17610 -15.00021 -14.73238 -14.58347 -14.26574 -14.10302 -14.02194 -13.67113 -13.52223 -13.03977 -12.90982 -12.66289 -12.59345 -12.09620 -12.04310 -11.91208 -11.83139 -11.64208 -11.50778 -11.45465 -11.22525 -11.00233 -10.89886 -10.84600 -10.69277 -10.43573 -10.33455 -10.26645 -10.10611 -9.99920 -9.58499 -9.06999 -8.81442 -8.59212 -8.19082 -6.72419 -5.87035 -3.36382 2.63034 3.29361 3.32550 3.38145 3.39410 3.68766 4.21613 4.37468 4.39529 4.40117 4.60580 4.79356 4.97076 5.13311 5.21216 5.31401 5.42314 5.45316 5.47668 5.49629 5.50387 5.56099 5.65586 5.69990 5.72889 5.77335 5.88414 5.90968 5.91801 5.97644 6.00958 6.02535 6.07821 6.09973 6.11657 6.29365 6.43715 6.56205 6.67419 6.73462 6.79744 6.84017 6.84997 7.06027 7.46748 7.66260 7.67323 7.85422 8.32368 8.34657 9.08701 9.69741 10.28541 11.20380 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.019920 B = 0.003236 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.257407 B = 8651.233326 C = 9207.920563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 N -0.498 5.498 3 C 0.009 3.991 4 C 0.061 3.939 5 C 0.496 3.504 6 O -0.546 6.546 7 N -0.712 5.712 8 C 0.139 3.861 9 C 0.078 3.922 10 C -0.161 4.161 11 C 0.161 3.839 12 N -0.591 5.591 13 C -0.255 4.255 14 H 0.067 0.933 15 C 0.006 3.994 16 N -0.904 5.904 17 Si 0.906 3.094 18 H -0.286 1.286 19 H -0.290 1.290 20 H -0.279 1.279 21 C 0.109 3.891 22 C 0.046 3.954 23 O -0.385 6.385 24 C -0.122 4.122 25 C -0.124 4.124 26 C -0.123 4.123 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.401 0.599 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.040 0.960 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.098 0.902 40 H 0.028 0.972 41 H 0.256 0.744 42 H 0.025 0.975 43 H 0.061 0.939 44 H 0.048 0.952 45 H 0.080 0.920 46 H 0.091 0.909 47 H 0.079 0.921 48 H 0.089 0.911 49 H 0.069 0.931 50 H 0.079 0.921 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.306 -5.360 -18.142 19.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 N -0.220 5.220 3 C -0.139 4.139 4 C -0.033 4.033 5 C 0.281 3.719 6 O -0.424 6.424 7 N -0.364 5.364 8 C 0.015 3.985 9 C 0.037 3.963 10 C -0.218 4.218 11 C 0.034 3.966 12 N -0.315 5.315 13 C -0.384 4.384 14 H 0.085 0.915 15 C -0.193 4.193 16 N -0.548 5.548 17 Si 0.736 3.264 18 H -0.213 1.213 19 H -0.216 1.216 20 H -0.204 1.204 21 C -0.017 4.017 22 C -0.032 4.032 23 O -0.304 6.304 24 C -0.161 4.161 25 C -0.162 4.162 26 C -0.161 4.161 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.236 0.764 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.059 0.941 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.116 0.884 40 H 0.046 0.954 41 H 0.066 0.934 42 H 0.043 0.957 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.098 0.902 46 H 0.109 0.891 47 H 0.098 0.902 48 H 0.108 0.892 49 H 0.088 0.912 50 H 0.098 0.902 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.811 -4.726 -18.600 19.566 hybrid contribution 0.482 0.515 1.858 1.988 sum 4.293 -4.211 -16.742 17.789 Atomic orbital electron populations 1.22527 0.86947 1.02136 1.02173 1.62355 1.08655 1.14335 1.36674 1.22537 1.00110 0.88827 1.02379 1.22457 0.97817 0.95691 0.87342 1.21519 0.79807 0.84290 0.86323 1.90617 1.40714 1.23718 1.87376 1.46094 1.51993 1.31573 1.06724 1.21356 0.99307 0.97201 0.80598 1.22572 0.93792 0.83046 0.96922 1.22195 0.95742 1.03075 1.00803 1.21315 0.97510 0.94595 0.83133 1.43968 1.70667 1.00765 1.16054 1.19160 1.20857 0.99697 0.98734 0.91534 1.25169 0.97158 0.98808 0.98160 1.69949 1.31515 1.10449 1.42873 0.86238 0.79445 0.78562 0.82183 1.21341 1.21570 1.20394 1.21600 0.97496 0.88277 0.94349 1.23037 0.98352 0.91098 0.90720 1.87804 1.74756 1.17329 1.50527 1.23055 0.99246 0.92011 1.01739 1.22744 0.96098 0.97029 1.00280 1.23004 0.92647 0.99003 1.01441 0.92656 0.91502 0.91842 0.91846 0.91580 0.92477 0.76356 0.91065 0.90178 0.94086 0.91919 0.90823 0.88439 0.95351 0.93379 0.95675 0.92067 0.93423 0.90189 0.89105 0.90225 0.89235 0.91192 0.90200 0.89424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.10 60.07 0.55 0.66 16 2 N -0.50 -5.76 4.80 -235.79 -1.13 -6.89 16 3 C 0.01 0.11 9.17 60.06 0.55 0.66 16 4 C 0.06 0.70 0.40 -131.93 -0.05 0.65 16 5 C 0.50 7.29 6.54 -10.99 -0.07 7.21 16 6 O -0.55 -9.80 12.29 5.56 0.07 -9.73 16 7 N -0.71 -10.20 4.76 -60.29 -0.29 -10.49 16 8 C 0.14 2.39 4.82 -4.04 -0.02 2.37 16 9 C 0.08 1.43 0.76 -90.46 -0.07 1.36 16 10 C -0.16 -2.70 7.92 37.16 0.29 -2.41 16 11 C 0.16 3.73 4.06 -3.49 -0.01 3.71 16 12 N -0.59 -14.25 2.56 -171.77 -0.44 -14.69 16 13 C -0.26 -6.72 9.65 -15.06 -0.15 -6.86 16 14 H 0.07 1.72 7.85 -52.49 -0.41 1.30 16 15 C 0.01 0.16 5.09 -17.43 -0.09 0.07 16 16 N -0.90 -25.56 10.98 55.49 0.61 -24.95 16 17 Si 0.91 21.14 29.56 -169.99 -5.03 16.12 16 18 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 C 0.11 2.21 6.73 -3.54 -0.02 2.19 16 22 C 0.05 0.77 6.60 37.31 0.25 1.02 16 23 O -0.38 -6.92 9.97 -35.23 -0.35 -7.27 16 24 C -0.12 -1.18 7.02 -25.83 -0.18 -1.36 16 25 C -0.12 -1.01 8.00 -25.83 -0.21 -1.21 16 26 C -0.12 -1.15 7.04 -25.92 -0.18 -1.33 16 27 H 0.05 0.79 5.98 -51.93 -0.31 0.48 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.69 6.88 -51.93 -0.36 0.33 16 30 H 0.06 0.65 6.67 -51.93 -0.35 0.30 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.80 5.86 -51.93 -0.30 0.50 16 33 H 0.40 5.08 5.56 -40.82 -0.23 4.85 16 34 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 35 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 36 H 0.04 0.57 6.88 -51.93 -0.36 0.21 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.07 1.35 6.11 -51.93 -0.32 1.04 16 39 H 0.10 2.50 6.18 -51.93 -0.32 2.18 16 40 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 1.18 7.96 -51.93 -0.41 0.76 16 44 H 0.05 0.78 6.25 -51.93 -0.32 0.45 16 45 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 46 H 0.09 0.88 6.97 -51.93 -0.36 0.51 16 47 H 0.08 0.76 7.07 -51.93 -0.37 0.39 16 48 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 49 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.08 0.73 6.72 -51.93 -0.35 0.38 16 51 H 0.09 0.79 7.49 -51.93 -0.39 0.40 16 LS Contribution 379.33 15.07 5.72 5.72 Total: -1.00 -30.02 379.33 -8.78 -38.80 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -8.52 Total: 6.66 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: 0.58 Total: 6.72 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: -1.25 Total: -57.01 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -0.28 Total: -17.00 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.02 -8.78 -38.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107993368.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.350 kcal (2) G-P(sol) polarization free energy of solvation -30.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds