Wall clock time and date at job start Fri Apr 10 2020 18:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46895 * 110.99907 * 2 1 4 4 C 1.46903 * 110.99684 * 123.95242 * 2 1 3 5 5 C 1.50704 * 112.84904 * 300.77153 * 4 2 1 6 6 O 1.21277 * 119.99909 * 354.28468 * 5 4 2 7 7 N 1.34771 * 119.99641 * 174.28968 * 5 4 2 8 8 C 1.46497 * 119.99837 * 184.69793 * 7 5 4 9 9 C 1.53006 * 109.47445 * 179.97438 * 8 7 5 10 10 C 1.53006 * 109.54934 * 60.12919 * 9 8 7 11 11 C 1.53296 * 109.51486 * 180.25371 * 9 8 7 12 12 N 1.47225 * 108.40270 * 172.23352 * 11 9 8 13 13 C 1.36937 * 121.03266 * 129.46381 * 12 11 9 14 14 H 1.07999 * 120.00247 * 209.83252 * 13 12 11 15 15 C 1.38819 * 119.99693 * 29.82514 * 13 12 11 16 16 N 1.31619 * 119.99872 * 9.79224 * 15 13 12 17 17 Si 1.86799 * 119.99736 * 189.79279 * 15 13 12 18 18 H 1.48500 * 109.47084 * 90.00191 * 17 15 13 19 19 H 1.48503 * 109.47229 * 210.00037 * 17 15 13 20 20 H 1.48500 * 109.47530 * 329.99889 * 17 15 13 21 21 C 1.47151 * 117.98646 * 309.48403 * 12 11 9 22 22 C 1.53292 * 108.41457 * 50.52382 * 21 12 11 23 23 O 1.42956 * 109.51152 * 300.00454 * 9 8 7 24 24 C 1.53784 * 113.61400 * 71.96985 * 4 2 1 25 25 C 1.53955 * 87.01579 * 89.22751 * 24 4 2 26 26 C 1.53773 * 87.11617 * 25.36418 * 25 24 4 27 27 H 1.09001 * 109.46956 * 302.33772 * 1 2 3 28 28 H 1.08999 * 109.47320 * 62.33625 * 1 2 3 29 29 H 1.08999 * 109.47100 * 182.33659 * 1 2 3 30 30 H 1.09006 * 109.47307 * 183.95114 * 3 2 1 31 31 H 1.08998 * 109.47479 * 303.94966 * 3 2 1 32 32 H 1.09003 * 109.47370 * 63.95252 * 3 2 1 33 33 H 0.96999 * 120.00427 * 4.69761 * 7 5 4 34 34 H 1.09006 * 109.47129 * 59.99933 * 8 7 5 35 35 H 1.08995 * 109.47423 * 299.99907 * 8 7 5 36 36 H 1.08998 * 109.46816 * 299.87182 * 10 9 8 37 37 H 1.08992 * 109.47113 * 59.87156 * 10 9 8 38 38 H 1.09001 * 109.47156 * 179.87656 * 10 9 8 39 39 H 1.09005 * 109.67926 * 291.95384 * 11 9 8 40 40 H 1.08997 * 109.68097 * 52.50694 * 11 9 8 41 41 H 0.97002 * 119.99506 * 180.02562 * 16 15 13 42 42 H 1.08997 * 109.68450 * 290.77866 * 21 12 11 43 43 H 1.09000 * 109.68059 * 170.26295 * 21 12 11 44 44 H 1.09000 * 109.51519 * 67.60124 * 22 21 12 45 45 H 1.09006 * 109.51388 * 187.70143 * 22 21 12 46 46 H 1.08996 * 113.61066 * 203.74315 * 24 4 2 47 47 H 1.09001 * 113.61249 * 334.65134 * 24 4 2 48 48 H 1.09001 * 113.53693 * 270.80636 * 25 24 4 49 49 H 1.08999 * 113.66330 * 139.93669 * 25 24 4 50 50 H 1.09006 * 113.61260 * 220.09063 * 26 25 24 51 51 H 1.08994 * 113.69623 * 89.19398 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 1.5417 -0.2235 2.4685 6 8 0.9042 0.8070 2.5177 7 7 1.8446 -0.8835 3.6038 8 6 1.3174 -0.4134 4.8872 9 6 1.8074 -1.3331 6.0076 10 6 3.3368 -1.3163 6.0517 11 6 1.2511 -0.8457 7.3503 12 7 1.5786 -1.8459 8.3797 13 6 2.1756 -1.4787 9.5562 14 1 2.8276 -2.1698 10.0696 15 6 1.9428 -0.2181 10.0887 16 7 1.0067 0.5510 9.5743 17 14 2.9582 0.3868 11.5352 18 1 4.1633 1.0942 11.0327 19 1 2.1440 1.3183 12.3566 20 1 3.3746 -0.7712 12.3665 21 6 1.2455 -3.2529 8.1062 22 6 1.8022 -3.6230 6.7267 23 8 1.3513 -2.6660 5.7650 24 6 1.8089 -2.2859 0.9960 25 6 3.1742 -2.3060 0.2848 26 6 3.5099 -1.0213 1.0604 27 1 -0.3633 0.5497 0.8683 28 1 -0.3634 0.4771 -0.9102 29 1 -0.3633 -1.0268 0.0419 30 1 3.0828 1.3432 -0.0708 31 1 1.5899 1.9163 -0.8524 32 1 1.7043 1.8724 0.9233 33 1 2.4117 -1.6698 3.5712 34 1 0.2278 -0.4250 4.8586 35 1 1.6652 0.6028 5.0726 36 1 3.7316 -1.6672 5.0983 37 1 3.6838 -0.2998 6.2366 38 1 3.6844 -1.9701 6.8516 39 1 1.7050 0.1107 7.6103 40 1 0.1693 -0.7321 7.2800 41 1 0.8443 1.4320 9.9463 42 1 0.1632 -3.3817 8.1120 43 1 1.6952 -3.8911 8.8668 44 1 2.8916 -3.6194 6.7608 45 1 1.4500 -4.6157 6.4463 46 1 1.8050 -2.8159 1.9484 47 1 0.9756 -2.5653 0.3514 48 1 3.1057 -2.1600 -0.7932 49 1 3.7978 -3.1570 0.5588 50 1 4.0478 -0.2814 0.4676 51 1 3.9720 -1.2035 2.0306 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107993368.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:45 Heat of formation + Delta-G solvation = -39.365769 kcal Electronic energy + Delta-G solvation = -30157.415421 eV Core-core repulsion = 26286.002415 eV Total energy + Delta-G solvation = -3871.413005 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.01962 -40.67356 -38.84289 -36.83725 -36.22822 -35.37102 -33.24270 -33.05958 -29.59639 -28.92950 -28.50852 -27.90411 -26.49838 -26.16894 -24.98471 -23.94434 -22.84642 -22.02295 -20.47031 -19.81661 -18.98811 -18.44522 -17.53508 -17.19097 -16.97076 -16.45385 -16.22556 -16.09854 -15.78690 -15.65197 -15.55600 -15.22041 -14.95371 -14.85570 -14.66139 -14.33390 -14.11678 -13.51408 -13.37844 -13.19871 -12.95106 -12.91966 -12.89676 -12.79563 -12.67684 -12.56111 -12.47052 -12.44753 -12.33659 -12.13508 -11.98198 -11.88163 -11.60613 -11.19379 -11.16825 -11.03675 -10.74092 -10.54170 -10.11874 -9.22790 -8.68340 -7.90201 -5.43161 1.45371 1.45852 1.49911 1.54989 2.10294 2.46502 2.77131 2.81125 3.25678 3.48872 3.56465 3.61122 3.74666 3.91733 3.92942 4.00158 4.09641 4.16488 4.40921 4.42381 4.46321 4.54075 4.57850 4.61020 4.65181 4.70555 4.71173 4.74589 4.76652 4.92891 4.93521 4.95307 5.01001 5.04790 5.11769 5.13780 5.14794 5.19946 5.22572 5.34388 5.39051 5.44371 5.54015 5.59549 5.91651 5.94350 6.29719 6.36576 6.52439 7.06625 7.19742 7.74175 8.29578 9.14664 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.019920 B = 0.003236 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.257407 B = 8651.233326 C = 9207.920563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.491 5.491 3 C 0.011 3.989 4 C 0.054 3.946 5 C 0.491 3.509 6 O -0.583 6.583 7 N -0.701 5.701 8 C 0.151 3.849 9 C 0.095 3.905 10 C -0.151 4.151 11 C 0.170 3.830 12 N -0.608 5.608 13 C -0.259 4.259 14 H 0.074 0.926 15 C -0.049 4.049 16 N -0.939 5.939 17 Si 0.969 3.031 18 H -0.283 1.283 19 H -0.298 1.298 20 H -0.266 1.266 21 C 0.102 3.898 22 C 0.052 3.948 23 O -0.384 6.384 24 C -0.121 4.121 25 C -0.108 4.108 26 C -0.120 4.120 27 H 0.023 0.977 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.025 0.975 33 H 0.412 0.588 34 H 0.049 0.951 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.052 0.948 38 H 0.062 0.938 39 H 0.066 0.934 40 H -0.011 1.011 41 H 0.250 0.750 42 H 0.011 0.989 43 H 0.072 0.928 44 H 0.062 0.938 45 H 0.119 0.881 46 H 0.093 0.907 47 H 0.081 0.919 48 H 0.092 0.908 49 H 0.090 0.910 50 H 0.084 0.916 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.551 -7.724 -19.897 22.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.213 5.213 3 C -0.137 4.137 4 C -0.041 4.041 5 C 0.278 3.722 6 O -0.464 6.464 7 N -0.354 5.354 8 C 0.026 3.974 9 C 0.054 3.946 10 C -0.209 4.209 11 C 0.043 3.957 12 N -0.332 5.332 13 C -0.389 4.389 14 H 0.091 0.909 15 C -0.244 4.244 16 N -0.585 5.585 17 Si 0.797 3.203 18 H -0.210 1.210 19 H -0.225 1.225 20 H -0.190 1.190 21 C -0.024 4.024 22 C -0.025 4.025 23 O -0.304 6.304 24 C -0.159 4.159 25 C -0.146 4.146 26 C -0.158 4.158 27 H 0.042 0.958 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.044 0.956 33 H 0.250 0.750 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.007 0.993 41 H 0.059 0.941 42 H 0.029 0.971 43 H 0.091 0.909 44 H 0.080 0.920 45 H 0.137 0.863 46 H 0.112 0.888 47 H 0.099 0.901 48 H 0.111 0.889 49 H 0.109 0.891 50 H 0.102 0.898 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.082 -7.150 -20.377 22.435 hybrid contribution -0.300 1.220 2.411 2.718 sum 5.782 -5.930 -17.967 19.784 Atomic orbital electron populations 1.22513 0.87237 1.02318 1.01509 1.62445 1.08379 1.14264 1.36200 1.22533 1.01074 0.88719 1.01338 1.22744 0.99653 0.96690 0.84992 1.22331 0.78868 0.83621 0.87393 1.90618 1.42329 1.25520 1.87934 1.45919 1.52000 1.31903 1.05529 1.20976 0.98004 0.96464 0.81978 1.22172 0.94820 0.83388 0.94250 1.22093 0.93908 1.02498 1.02371 1.21046 0.95043 0.93748 0.85866 1.44218 1.70677 1.02406 1.15880 1.19520 1.20456 0.99737 0.99218 0.90850 1.25925 0.98386 0.99247 1.00829 1.70140 1.33448 1.10480 1.44384 0.85238 0.77772 0.78032 0.79232 1.20990 1.22487 1.19021 1.21826 0.97006 0.86305 0.97226 1.23123 0.99123 0.92169 0.88074 1.87817 1.75069 1.16917 1.50575 1.23111 1.00528 0.90004 1.02232 1.22685 0.94900 0.96872 1.00100 1.23083 0.90664 0.99871 1.02227 0.95839 0.89910 0.91000 0.90414 0.90254 0.95588 0.74967 0.93264 0.91540 0.90399 0.92857 0.91874 0.91571 0.99299 0.94117 0.97101 0.90940 0.92014 0.86297 0.88843 0.90063 0.88904 0.89134 0.89780 0.88753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.28 9.10 127.69 1.16 1.44 16 2 N -0.49 -10.64 4.80 -899.91 -4.32 -14.96 16 3 C 0.01 0.25 9.17 127.69 1.17 1.42 16 4 C 0.05 1.13 0.40 3.31 0.00 1.13 16 5 C 0.49 14.28 6.54 87.66 0.57 14.86 16 6 O -0.58 -21.72 12.29 -3.02 -0.04 -21.75 16 7 N -0.70 -19.48 4.76 -463.06 -2.20 -21.68 16 8 C 0.15 5.33 4.82 86.38 0.42 5.75 16 9 C 0.09 3.48 0.76 -10.69 -0.01 3.47 16 10 C -0.15 -4.86 7.92 71.98 0.57 -4.29 16 11 C 0.17 8.20 4.06 86.34 0.35 8.55 16 12 N -0.61 -29.70 2.56 -697.36 -1.79 -31.49 16 13 C -0.26 -13.76 9.65 84.04 0.81 -12.95 16 14 H 0.07 3.73 7.85 -2.91 -0.02 3.70 16 15 C -0.05 -2.66 5.09 84.86 0.43 -2.23 16 16 N -0.94 -55.39 10.98 21.65 0.24 -55.15 16 17 Si 0.97 44.05 29.56 68.60 2.03 46.08 16 18 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 19 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 20 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 21 C 0.10 4.04 6.73 86.35 0.58 4.62 16 22 C 0.05 1.62 6.60 72.08 0.48 2.09 16 23 O -0.38 -13.16 9.97 -148.98 -1.49 -14.65 16 24 C -0.12 -1.97 7.02 31.18 0.22 -1.75 16 25 C -0.11 -1.33 8.00 31.18 0.25 -1.08 16 26 C -0.12 -1.88 7.04 31.12 0.22 -1.66 16 27 H 0.02 0.69 5.98 -2.39 -0.01 0.67 16 28 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.07 1.48 6.88 -2.39 -0.02 1.46 16 30 H 0.08 1.45 6.67 -2.38 -0.02 1.43 16 31 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.03 0.74 5.86 -2.39 -0.01 0.73 16 33 H 0.41 9.39 5.56 -92.71 -0.52 8.87 16 34 H 0.05 1.94 8.14 -2.38 -0.02 1.93 16 35 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.08 1.92 6.88 -2.39 -0.02 1.90 16 37 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.06 2.19 6.11 -2.39 -0.01 2.17 16 39 H 0.07 3.60 6.18 -2.38 -0.01 3.59 16 40 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 41 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 42 H 0.01 0.46 8.14 -2.39 -0.02 0.45 16 43 H 0.07 2.68 7.96 -2.39 -0.02 2.66 16 44 H 0.06 1.78 6.25 -2.39 -0.01 1.77 16 45 H 0.12 2.82 8.14 -2.38 -0.02 2.80 16 46 H 0.09 1.49 6.97 -2.39 -0.02 1.48 16 47 H 0.08 1.32 7.07 -2.39 -0.02 1.30 16 48 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 49 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 50 H 0.08 1.27 6.72 -2.38 -0.02 1.25 16 51 H 0.09 1.36 7.49 -2.39 -0.02 1.34 16 Total: -1.00 -68.35 379.33 0.07 -68.29 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: 0.41 Total: 25.97 kcal Atomic # 6 Polarization: 12.13 SS G_CDS: 7.22 Total: 19.35 kcal Atomic # 7 Polarization: -115.21 SS G_CDS: -8.07 Total: -123.29 kcal Atomic # 8 Polarization: -34.88 SS G_CDS: -1.52 Total: -36.40 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -68.35 0.07 -68.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107993368.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.919 kcal (2) G-P(sol) polarization free energy of solvation -68.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds