Wall clock time and date at job start Fri Apr 10 2020 18:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46904 * 110.99963 * 2 1 4 4 C 1.46901 * 110.99699 * 123.95352 * 2 1 3 5 5 C 1.50698 * 112.85260 * 302.19832 * 4 2 1 6 6 O 1.21281 * 119.99835 * 351.99173 * 5 4 2 7 7 N 1.34771 * 120.00161 * 171.99357 * 5 4 2 8 8 C 1.46500 * 120.00164 * 185.05090 * 7 5 4 9 9 C 1.53001 * 109.47469 * 180.02562 * 8 7 5 10 10 C 1.53006 * 109.50798 * 304.90108 * 9 8 7 11 11 C 1.53286 * 109.55868 * 184.77065 * 9 8 7 12 12 N 1.47147 * 108.38931 * 187.74767 * 11 9 8 13 13 C 1.36937 * 120.98385 * 230.55905 * 12 11 9 14 14 H 1.08005 * 120.00198 * 153.37262 * 13 12 11 15 15 C 1.38811 * 119.99867 * 333.37483 * 13 12 11 16 16 N 1.31618 * 119.99984 * 343.35483 * 15 13 12 17 17 Si 1.86804 * 119.99857 * 163.35553 * 15 13 12 18 18 H 1.48493 * 109.47349 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.47086 * 120.00128 * 17 15 13 20 20 H 1.48504 * 109.47140 * 239.99633 * 17 15 13 21 21 C 1.47151 * 118.03425 * 50.52954 * 12 11 9 22 22 C 1.53286 * 108.38787 * 309.47061 * 21 12 11 23 23 O 1.42961 * 109.22508 * 52.29999 * 22 21 12 24 24 C 1.53785 * 113.68926 * 73.47011 * 4 2 1 25 25 C 1.53781 * 87.08024 * 89.12594 * 24 4 2 26 26 C 1.53776 * 87.08366 * 25.42986 * 25 24 4 27 27 H 1.09005 * 109.47057 * 302.47196 * 1 2 3 28 28 H 1.08996 * 109.46971 * 62.46603 * 1 2 3 29 29 H 1.08994 * 109.47335 * 182.46771 * 1 2 3 30 30 H 1.09004 * 109.46898 * 183.95398 * 3 2 1 31 31 H 1.09000 * 109.47126 * 303.95293 * 3 2 1 32 32 H 1.09001 * 109.46684 * 63.95910 * 3 2 1 33 33 H 0.97005 * 120.00050 * 5.05030 * 7 5 4 34 34 H 1.08996 * 109.47238 * 59.99724 * 8 7 5 35 35 H 1.08998 * 109.47232 * 299.99721 * 8 7 5 36 36 H 1.09008 * 109.46945 * 180.10353 * 10 9 8 37 37 H 1.09000 * 109.46690 * 300.09678 * 10 9 8 38 38 H 1.08988 * 109.47504 * 60.10046 * 10 9 8 39 39 H 1.09001 * 109.67937 * 307.47469 * 11 9 8 40 40 H 1.09004 * 109.68033 * 67.98568 * 11 9 8 41 41 H 0.97000 * 119.99852 * 179.97438 * 16 15 13 42 42 H 1.08998 * 109.67882 * 189.73995 * 21 12 11 43 43 H 1.09008 * 109.67900 * 69.19636 * 21 12 11 44 44 H 1.09009 * 109.51357 * 172.22450 * 22 21 12 45 45 H 1.09004 * 109.51565 * 292.32509 * 22 21 12 46 46 H 1.08998 * 113.60847 * 203.67062 * 24 4 2 47 47 H 1.08995 * 113.61610 * 334.57648 * 24 4 2 48 48 H 1.09003 * 113.61252 * 270.87971 * 25 24 4 49 49 H 1.08997 * 113.61278 * 139.98145 * 25 24 4 50 50 H 1.08998 * 113.61396 * 220.01565 * 26 25 24 51 51 H 1.09005 * 113.61430 * 89.11642 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.5143 -0.2445 2.4671 6 8 0.8919 0.7950 2.5215 7 7 1.7756 -0.9332 3.5957 8 6 1.2147 -0.4862 4.8731 9 6 1.6618 -1.4355 5.9866 10 6 1.2741 -2.8699 5.6214 11 6 0.9813 -1.0402 7.3020 12 7 1.5663 -1.8437 8.3871 13 6 0.7697 -2.5293 9.2649 14 1 1.1448 -3.4153 9.7558 15 6 -0.5199 -2.0857 9.5237 16 7 -0.8710 -0.8590 9.2012 17 14 -1.7569 -3.2300 10.3300 18 1 -1.1180 -4.5446 10.5915 19 1 -2.2151 -2.6388 11.6130 20 1 -2.9211 -3.4157 9.4270 21 6 3.0328 -1.8892 8.5006 22 6 3.6134 -2.2431 7.1269 23 8 3.0800 -1.3502 6.1461 24 6 1.8427 -2.2882 0.9812 25 6 3.2147 -2.2753 0.2867 26 6 3.5154 -0.9914 1.0778 27 1 -0.3633 0.5518 0.8670 28 1 -0.3633 0.4750 -0.9112 29 1 -0.3634 -1.0266 0.0442 30 1 3.0828 1.3432 -0.0709 31 1 1.5898 1.9164 -0.8524 32 1 1.7044 1.8723 0.9234 33 1 2.3351 -1.7250 3.5622 34 1 0.1265 -0.4848 4.8115 35 1 1.5675 0.5216 5.0921 36 1 1.5913 -3.5455 6.4160 37 1 0.1928 -2.9342 5.5000 38 1 1.7620 -3.1519 4.6885 39 1 1.1487 0.0188 7.4981 40 1 -0.0889 -1.2365 7.2351 41 1 -1.7723 -0.5491 9.3817 42 1 3.3212 -2.6481 9.2279 43 1 3.4068 -0.9155 8.8175 44 1 4.6989 -2.1471 7.1546 45 1 3.3450 -3.2682 6.8713 46 1 1.8383 -2.8262 1.9291 47 1 1.0234 -2.5796 0.3240 48 1 3.1573 -2.1209 -0.7908 49 1 3.8510 -3.1166 0.5613 50 1 4.0465 -0.2360 0.4988 51 1 3.9682 -1.1750 2.0523 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107993369.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:49 Heat of formation + Delta-G solvation = -16.952939 kcal Electronic energy + Delta-G solvation = -30174.959737 eV Core-core repulsion = 26304.518625 eV Total energy + Delta-G solvation = -3870.441112 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.01679 -39.20064 -37.74782 -35.66817 -34.58518 -34.17984 -31.66697 -31.28593 -28.05770 -28.00698 -27.36260 -26.25431 -25.42113 -25.19602 -23.27362 -22.93465 -21.41227 -20.85072 -19.14350 -18.57565 -17.64113 -16.97748 -16.36188 -15.86716 -15.35097 -15.18584 -15.14950 -14.77327 -14.54278 -14.25458 -14.11879 -14.04420 -13.69357 -13.53968 -13.06393 -12.87614 -12.64828 -12.62870 -12.13369 -12.05946 -11.92619 -11.84136 -11.65997 -11.51725 -11.46057 -11.23298 -11.05985 -10.89710 -10.84727 -10.69805 -10.44247 -10.35083 -10.26823 -10.09909 -9.98551 -9.58482 -9.09864 -8.83175 -8.57948 -8.20337 -6.77602 -5.88310 -3.32199 2.62061 3.28108 3.31898 3.38914 3.40455 3.67669 4.20751 4.36159 4.38681 4.40330 4.59582 4.77551 4.95424 5.10906 5.20103 5.30362 5.40774 5.44272 5.47623 5.47947 5.48258 5.55234 5.62801 5.68991 5.71901 5.76272 5.87297 5.89710 5.90624 5.95517 6.00167 6.01203 6.06377 6.08663 6.10654 6.27851 6.41611 6.55145 6.66173 6.71765 6.78309 6.82973 6.83999 7.02817 7.42259 7.64535 7.67667 7.84304 8.29064 8.33157 9.06990 9.70032 10.27307 11.19676 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.018629 B = 0.003306 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.705760 B = 8467.976531 C = 9007.460280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 N -0.498 5.498 3 C 0.010 3.990 4 C 0.061 3.939 5 C 0.496 3.504 6 O -0.545 6.545 7 N -0.713 5.713 8 C 0.139 3.861 9 C 0.079 3.921 10 C -0.161 4.161 11 C 0.161 3.839 12 N -0.591 5.591 13 C -0.255 4.255 14 H 0.069 0.931 15 C 0.004 3.996 16 N -0.901 5.901 17 Si 0.902 3.098 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.288 1.288 21 C 0.109 3.891 22 C 0.046 3.954 23 O -0.384 6.384 24 C -0.123 4.123 25 C -0.124 4.124 26 C -0.123 4.123 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.400 0.600 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.040 0.960 39 H 0.029 0.971 40 H 0.096 0.904 41 H 0.255 0.745 42 H 0.061 0.939 43 H 0.025 0.975 44 H 0.080 0.920 45 H 0.048 0.952 46 H 0.087 0.913 47 H 0.080 0.920 48 H 0.089 0.911 49 H 0.069 0.931 50 H 0.079 0.921 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.775 -2.806 -17.586 19.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 N -0.220 5.220 3 C -0.138 4.138 4 C -0.033 4.033 5 C 0.281 3.719 6 O -0.424 6.424 7 N -0.365 5.365 8 C 0.015 3.985 9 C 0.037 3.963 10 C -0.219 4.219 11 C 0.034 3.966 12 N -0.314 5.314 13 C -0.384 4.384 14 H 0.086 0.914 15 C -0.195 4.195 16 N -0.545 5.545 17 Si 0.732 3.268 18 H -0.202 1.202 19 H -0.216 1.216 20 H -0.215 1.215 21 C -0.017 4.017 22 C -0.032 4.032 23 O -0.304 6.304 24 C -0.161 4.161 25 C -0.162 4.162 26 C -0.161 4.161 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.236 0.764 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.059 0.941 39 H 0.047 0.953 40 H 0.114 0.886 41 H 0.065 0.935 42 H 0.080 0.920 43 H 0.043 0.957 44 H 0.098 0.902 45 H 0.066 0.934 46 H 0.106 0.894 47 H 0.098 0.902 48 H 0.108 0.892 49 H 0.088 0.912 50 H 0.098 0.902 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.407 -2.093 -18.028 19.603 hybrid contribution -0.928 -0.548 1.487 1.836 sum 6.480 -2.641 -16.541 17.961 Atomic orbital electron populations 1.22533 0.86949 1.02122 1.02217 1.62354 1.08644 1.14366 1.36656 1.22534 1.00151 0.88777 1.02340 1.22452 0.97763 0.95737 0.87353 1.21513 0.79805 0.84298 0.86299 1.90620 1.41389 1.23184 1.87169 1.46145 1.52151 1.30841 1.07400 1.21336 0.98282 0.98279 0.80632 1.22540 0.82413 0.94377 0.96921 1.22204 1.01766 0.97447 1.00463 1.21269 0.98665 0.93858 0.82806 1.44002 0.99265 1.57162 1.31007 1.19200 0.94913 1.04320 1.19952 0.91365 1.25050 0.99405 0.95517 0.99500 1.70024 1.18989 1.14418 1.51088 0.86229 0.81463 0.80343 0.78778 1.20220 1.21615 1.21459 1.21598 0.86498 0.99058 0.94579 1.23038 0.96969 0.93065 0.90134 1.87823 1.21123 1.62264 1.59165 1.23009 0.99336 0.92131 1.01605 1.22717 0.96054 0.97097 1.00293 1.23026 0.92495 0.99050 1.01534 0.92633 0.91475 0.91871 0.91792 0.91566 0.92524 0.76353 0.90198 0.90913 0.90715 0.91877 0.94080 0.95312 0.88634 0.93474 0.92024 0.95665 0.90176 0.93382 0.89408 0.90175 0.89206 0.91183 0.90194 0.89207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.08 60.07 0.55 0.66 16 2 N -0.50 -5.73 4.81 -235.79 -1.13 -6.86 16 3 C 0.01 0.11 9.17 60.07 0.55 0.66 16 4 C 0.06 0.70 0.41 -131.94 -0.05 0.64 16 5 C 0.50 7.27 6.53 -10.99 -0.07 7.20 16 6 O -0.55 -9.78 12.32 5.56 0.07 -9.71 16 7 N -0.71 -10.18 4.82 -60.30 -0.29 -10.47 16 8 C 0.14 2.38 4.86 -4.04 -0.02 2.36 16 9 C 0.08 1.44 0.78 -90.47 -0.07 1.37 16 10 C -0.16 -2.68 7.86 37.16 0.29 -2.39 16 11 C 0.16 3.71 4.11 -3.54 -0.01 3.69 16 12 N -0.59 -14.22 2.56 -171.84 -0.44 -14.66 16 13 C -0.25 -6.70 9.65 -15.06 -0.15 -6.84 16 14 H 0.07 1.76 7.88 -52.48 -0.41 1.35 16 15 C 0.00 0.11 4.95 -17.43 -0.09 0.03 16 16 N -0.90 -25.50 11.15 55.49 0.62 -24.88 16 17 Si 0.90 21.07 29.59 -169.99 -5.03 16.04 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 C 0.11 2.21 6.73 -3.54 -0.02 2.19 16 22 C 0.05 0.78 6.59 37.31 0.25 1.02 16 23 O -0.38 -6.98 10.17 -35.23 -0.36 -7.34 16 24 C -0.12 -1.15 7.02 -25.92 -0.18 -1.33 16 25 C -0.12 -1.00 7.99 -25.92 -0.21 -1.21 16 26 C -0.12 -1.17 7.05 -25.92 -0.18 -1.35 16 27 H 0.06 0.79 5.96 -51.93 -0.31 0.48 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.68 6.99 -51.93 -0.36 0.31 16 30 H 0.06 0.65 6.59 -51.93 -0.34 0.31 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.79 5.91 -51.93 -0.31 0.49 16 33 H 0.40 5.04 5.36 -40.82 -0.22 4.82 16 34 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 35 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.07 1.36 6.12 -51.92 -0.32 1.04 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.04 0.56 6.59 -51.94 -0.34 0.22 16 39 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.10 2.44 6.16 -51.93 -0.32 2.12 16 41 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.06 1.18 7.96 -51.93 -0.41 0.77 16 43 H 0.03 0.54 8.14 -51.92 -0.42 0.11 16 44 H 0.08 1.13 8.14 -51.92 -0.42 0.71 16 45 H 0.05 0.78 6.26 -51.93 -0.32 0.46 16 46 H 0.09 0.79 6.85 -51.93 -0.36 0.44 16 47 H 0.08 0.74 7.19 -51.93 -0.37 0.37 16 48 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.08 0.74 6.63 -51.93 -0.34 0.39 16 51 H 0.09 0.85 7.64 -51.93 -0.40 0.45 16 LS Contribution 379.32 15.07 5.72 5.72 Total: -1.00 -30.19 379.32 -8.78 -38.97 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -8.50 Total: 6.51 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: 0.58 Total: 6.69 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: -1.25 Total: -56.88 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.29 Total: -17.05 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.19 -8.78 -38.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107993369.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.015 kcal (2) G-P(sol) polarization free energy of solvation -30.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds