Wall clock time and date at job start Fri Apr 10 2020 18:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42898 * 114.00083 * 2 1 4 4 H 1.09005 * 109.47156 * 24.07443 * 3 2 1 5 5 C 1.50707 * 109.46977 * 144.07130 * 3 2 1 6 6 O 1.21282 * 119.99749 * 5.00318 * 5 3 2 7 7 N 1.34780 * 119.99839 * 185.00430 * 5 3 2 8 8 C 1.47080 * 120.88208 * 359.71960 * 7 5 3 9 9 C 1.53695 * 108.27409 * 128.75641 * 8 7 5 10 10 N 1.46902 * 109.25511 * 54.08419 * 9 8 7 11 11 C 1.46898 * 110.99550 * 172.60464 * 10 9 8 12 12 C 1.50701 * 109.47530 * 294.29767 * 11 10 9 13 13 O 1.21296 * 119.99553 * 0.02562 * 12 11 10 14 14 N 1.34778 * 120.00136 * 179.97438 * 12 11 10 15 15 C 1.37098 * 119.99570 * 179.97438 * 14 12 11 16 16 H 1.07999 * 120.00457 * 0.02562 * 15 14 12 17 17 C 1.38954 * 119.99701 * 179.97438 * 15 14 12 18 18 N 1.31415 * 120.00078 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00073 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47150 * 0.02562 * 19 17 15 21 21 H 1.48510 * 109.46866 * 120.00382 * 19 17 15 22 22 H 1.48499 * 109.47597 * 240.00175 * 19 17 15 23 23 C 1.46889 * 111.26846 * 296.75274 * 10 9 8 24 24 C 1.47084 * 120.87765 * 180.02562 * 7 5 3 25 25 C 1.52994 * 109.47756 * 264.07174 * 3 2 1 26 26 C 1.52999 * 117.49719 * 301.39091 * 25 3 2 27 27 C 1.53000 * 60.03778 * 107.47181 * 26 25 3 28 28 H 1.09001 * 109.47174 * 54.69505 * 1 2 3 29 29 H 1.09004 * 109.47536 * 174.69561 * 1 2 3 30 30 H 1.09004 * 109.47547 * 294.70028 * 1 2 3 31 31 H 1.09000 * 109.62529 * 248.52453 * 8 7 5 32 32 H 1.08998 * 109.62543 * 9.10529 * 8 7 5 33 33 H 1.08993 * 109.65073 * 294.07648 * 9 8 7 34 34 H 1.09009 * 109.41669 * 173.94393 * 9 8 7 35 35 H 1.08997 * 109.47546 * 54.30603 * 11 10 9 36 36 H 1.09004 * 109.47174 * 174.29935 * 11 10 9 37 37 H 0.96999 * 120.00080 * 0.02562 * 14 12 11 38 38 H 0.96998 * 120.00447 * 179.97438 * 18 17 15 39 39 H 1.09004 * 109.49496 * 303.14512 * 23 10 9 40 40 H 1.09005 * 109.49421 * 183.06958 * 23 10 9 41 41 H 1.08993 * 109.62927 * 350.89474 * 24 7 5 42 42 H 1.09002 * 109.62242 * 111.47576 * 24 7 5 43 43 H 1.08997 * 115.56657 * 155.69851 * 25 3 2 44 44 H 1.08999 * 117.50208 * 214.97620 * 26 25 3 45 45 H 1.09003 * 117.49895 * 359.97175 * 26 25 3 46 46 H 1.09005 * 117.49593 * 107.49194 * 27 26 25 47 47 H 1.08994 * 117.50172 * 252.52766 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3008 2.0190 0.4192 5 6 3.2656 1.2963 0.8337 6 8 3.6765 0.2547 1.2997 7 7 3.9315 2.4457 1.0616 8 6 3.4539 3.7188 0.5009 9 6 3.3758 4.7479 1.6399 10 7 4.6763 4.8181 2.3194 11 6 4.6997 5.9121 3.2994 12 6 4.5905 7.2324 2.5812 13 8 4.5014 7.2593 1.3718 14 7 4.5908 8.3833 3.2827 15 6 4.4920 9.5844 2.6291 16 1 4.4135 9.6084 1.5523 17 6 4.4917 10.7709 3.3524 18 7 4.5867 10.7417 4.6628 19 14 4.3564 12.4074 2.4621 20 1 4.2616 12.1688 0.9994 21 1 3.1414 13.1243 2.9261 22 1 5.5579 13.2302 2.7530 23 6 5.0166 3.5370 2.9523 24 6 5.1590 2.4591 1.8719 25 6 2.3537 1.7109 -1.4347 26 6 3.3162 0.8106 -2.2119 27 6 1.8276 0.8228 -2.5652 28 1 -0.3633 0.5939 -0.8387 29 1 -0.3634 -1.0233 -0.0950 30 1 -0.3634 0.4294 0.9336 31 1 4.1492 4.0661 -0.2633 32 1 2.4652 3.5785 0.0640 33 1 2.6084 4.4475 2.3533 34 1 3.1273 5.7261 1.2281 35 1 3.8612 5.8021 3.9870 36 1 5.6347 5.8790 3.8587 37 1 4.6616 8.3617 4.2499 38 1 4.5869 11.5699 5.1677 39 1 4.2263 3.2534 3.6475 40 1 5.9581 3.6369 3.4926 41 1 5.2981 1.4855 2.3418 42 1 6.0146 2.6878 1.2365 43 1 2.4071 2.7836 -1.6204 44 1 4.0029 1.2910 -2.9089 45 1 3.7050 -0.0702 -1.7009 46 1 1.5349 1.3114 -3.4946 47 1 1.2370 -0.0497 -2.2862 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112812905.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:35 Heat of formation + Delta-G solvation = -63.569020 kcal Electronic energy + Delta-G solvation = -28506.258049 eV Core-core repulsion = 24497.962418 eV Total energy + Delta-G solvation = -4008.295632 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.70002 -39.08624 -38.19291 -37.12725 -36.13882 -34.51148 -33.80868 -31.39168 -31.29431 -29.55155 -28.42844 -26.46640 -25.63036 -23.95873 -23.61258 -22.61339 -21.89325 -20.66384 -19.35814 -19.06001 -17.92709 -17.45856 -17.10163 -16.63482 -16.12280 -15.71394 -15.19313 -15.05615 -14.92184 -14.79279 -14.59736 -14.48330 -14.02428 -13.81392 -13.65913 -13.54877 -13.10613 -12.85464 -12.55658 -12.06392 -11.98307 -11.68742 -11.65806 -11.60638 -11.55652 -11.29783 -11.19464 -11.16772 -10.91155 -10.79351 -10.61078 -10.38005 -10.26996 -10.10577 -9.54145 -9.47921 -8.87760 -8.41052 -8.03334 -7.93466 -6.46352 -3.87336 2.48519 2.62676 3.12696 3.23856 3.30384 3.42810 3.63478 3.84049 3.91018 4.18774 4.27439 4.42069 4.58015 4.75138 4.88205 4.90333 4.95276 5.00533 5.05683 5.10486 5.11357 5.19544 5.22605 5.32069 5.36558 5.39896 5.46101 5.47261 5.64206 5.70687 5.76735 5.82610 5.86207 5.86846 5.98184 6.09298 6.12962 6.20954 6.42261 6.74270 7.10138 7.26238 7.35413 7.50911 8.01521 8.08974 8.56250 9.13211 9.49341 10.00274 10.71347 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.020952 B = 0.002534 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.042630 B =11049.016920 C =11636.347790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.356 6.356 3 C 0.103 3.897 4 H 0.090 0.910 5 C 0.521 3.479 6 O -0.529 6.529 7 N -0.607 5.607 8 C 0.113 3.887 9 C 0.037 3.963 10 N -0.514 5.514 11 C 0.046 3.954 12 C 0.443 3.557 13 O -0.579 6.579 14 N -0.563 5.563 15 C -0.299 4.299 16 H 0.104 0.896 17 C 0.022 3.978 18 N -0.901 5.901 19 Si 0.929 3.071 20 H -0.268 1.268 21 H -0.282 1.282 22 H -0.281 1.281 23 C 0.040 3.960 24 C 0.121 3.879 25 C -0.188 4.188 26 C -0.164 4.164 27 C -0.164 4.164 28 H 0.047 0.953 29 H 0.090 0.910 30 H 0.043 0.957 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.027 0.973 34 H 0.116 0.884 35 H 0.048 0.952 36 H 0.090 0.910 37 H 0.392 0.608 38 H 0.271 0.729 39 H 0.035 0.965 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.077 0.923 43 H 0.122 0.878 44 H 0.096 0.904 45 H 0.098 0.902 46 H 0.095 0.905 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.170 -17.619 -7.069 19.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.273 6.273 3 C 0.041 3.959 4 H 0.108 0.892 5 C 0.308 3.692 6 O -0.405 6.405 7 N -0.342 5.342 8 C -0.010 4.010 9 C -0.091 4.091 10 N -0.239 5.239 11 C -0.085 4.085 12 C 0.229 3.771 13 O -0.463 6.463 14 N -0.199 5.199 15 C -0.428 4.428 16 H 0.122 0.878 17 C -0.180 4.180 18 N -0.542 5.542 19 Si 0.756 3.244 20 H -0.192 1.192 21 H -0.208 1.208 22 H -0.207 1.207 23 C -0.088 4.088 24 C -0.002 4.002 25 C -0.207 4.207 26 C -0.200 4.200 27 C -0.201 4.201 28 H 0.066 0.934 29 H 0.108 0.892 30 H 0.062 0.938 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.045 0.955 34 H 0.134 0.866 35 H 0.066 0.934 36 H 0.109 0.891 37 H 0.225 0.775 38 H 0.081 0.919 39 H 0.053 0.947 40 H 0.106 0.894 41 H 0.111 0.889 42 H 0.095 0.905 43 H 0.140 0.860 44 H 0.114 0.886 45 H 0.117 0.883 46 H 0.113 0.887 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.551 -18.086 -7.846 20.482 hybrid contribution -0.818 1.153 0.996 1.730 sum -6.369 -16.934 -6.850 19.345 Atomic orbital electron populations 1.22935 0.80620 1.03153 1.00367 1.88007 1.19680 1.25034 1.94611 1.21363 0.94115 0.86689 0.93700 0.89202 1.20269 0.84996 0.83445 0.80495 1.90688 1.67952 1.30906 1.50964 1.48133 1.26708 1.07437 1.51914 1.22131 1.00092 0.82124 0.96664 1.22756 0.89198 1.01595 0.95554 1.61496 1.30832 1.02352 1.29171 1.21858 1.01888 0.91306 0.93461 1.19707 0.84559 0.84652 0.88205 1.90472 1.55202 1.86821 1.13839 1.41886 1.63818 1.04822 1.09421 1.19741 1.47122 0.82087 0.93864 0.87812 1.25273 0.97299 0.99860 0.95523 1.69618 1.50353 1.28866 1.05394 0.85806 0.77756 0.81210 0.79606 1.19193 1.20781 1.20727 1.22525 1.01347 0.89510 0.95462 1.21705 0.86280 0.99354 0.92847 1.22862 1.07954 0.98462 0.91420 1.22903 0.92764 1.01768 1.02609 1.22963 0.97496 1.01902 0.97773 0.93401 0.89177 0.93828 0.89714 0.89845 0.95496 0.86571 0.93449 0.89141 0.77481 0.91881 0.94714 0.89412 0.88851 0.90451 0.85991 0.88582 0.88324 0.88658 0.87968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.99 101.05 1.01 1.21 16 2 O -0.36 -4.17 8.58 -55.09 -0.47 -4.64 16 3 C 0.10 1.12 2.14 -27.88 -0.06 1.06 16 4 H 0.09 0.83 7.02 -51.93 -0.36 0.47 16 5 C 0.52 7.16 6.81 -10.98 -0.07 7.08 16 6 O -0.53 -9.14 15.96 -14.31 -0.23 -9.37 16 7 N -0.61 -7.72 3.00 -172.15 -0.52 -8.24 16 8 C 0.11 1.36 5.61 -3.36 -0.02 1.34 16 9 C 0.04 0.55 5.27 -3.46 -0.02 0.53 16 10 N -0.51 -7.98 4.37 -235.44 -1.03 -9.01 16 11 C 0.05 0.78 5.45 -4.98 -0.03 0.75 16 12 C 0.44 9.87 7.44 -10.98 -0.08 9.79 16 13 O -0.58 -14.54 13.91 5.54 0.08 -14.46 16 14 N -0.56 -13.71 5.29 -10.96 -0.06 -13.76 16 15 C -0.30 -8.04 9.68 -14.93 -0.14 -8.18 16 16 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 17 C 0.02 0.58 5.50 -17.46 -0.10 0.48 16 18 N -0.90 -24.00 13.05 55.50 0.72 -23.28 16 19 Si 0.93 20.51 29.55 -169.99 -5.02 15.49 16 20 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 21 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 23 C 0.04 0.51 5.62 -3.69 -0.02 0.49 16 24 C 0.12 1.50 6.60 -3.58 -0.02 1.48 16 25 C -0.19 -1.76 4.85 -90.58 -0.44 -2.20 16 26 C -0.16 -1.61 9.82 -26.73 -0.26 -1.87 16 27 C -0.16 -1.37 9.51 -26.69 -0.25 -1.63 16 28 H 0.05 0.30 7.61 -51.93 -0.40 -0.09 16 29 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.08 0.80 4.65 -51.93 -0.24 0.56 16 33 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.12 2.04 5.76 -51.92 -0.30 1.74 16 35 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 36 H 0.09 1.38 7.97 -51.93 -0.41 0.97 16 37 H 0.39 9.19 7.90 -40.82 -0.32 8.86 16 38 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 39 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.09 0.98 7.99 -51.93 -0.41 0.57 16 41 H 0.09 1.18 7.06 -51.93 -0.37 0.81 16 42 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.12 1.01 6.57 -51.93 -0.34 0.67 16 44 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.10 0.88 6.30 -51.93 -0.33 0.55 16 LS Contribution 375.04 15.07 5.65 5.65 Total: -1.00 -32.56 375.04 -8.61 -41.17 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -7.22 Total: 10.11 kcal Atomic # 6 Polarization: 10.85 SS G_CDS: -0.51 Total: 10.34 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: -0.88 Total: -54.29 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.62 Total: -28.46 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.56 -8.61 -41.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112812905.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.395 kcal (2) G-P(sol) polarization free energy of solvation -32.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds