Wall clock time and date at job start Fri Apr 10 2020 18:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42898 * 114.00083 * 2 1 4 4 H 1.09005 * 109.47156 * 24.07443 * 3 2 1 5 5 C 1.50707 * 109.46977 * 144.07130 * 3 2 1 6 6 O 1.21282 * 119.99749 * 5.00318 * 5 3 2 7 7 N 1.34780 * 119.99839 * 185.00430 * 5 3 2 8 8 C 1.47080 * 120.88208 * 359.71960 * 7 5 3 9 9 C 1.53695 * 108.27409 * 128.75641 * 8 7 5 10 10 N 1.46902 * 109.25511 * 54.08419 * 9 8 7 11 11 C 1.46898 * 110.99550 * 172.60464 * 10 9 8 12 12 C 1.50701 * 109.47530 * 294.29767 * 11 10 9 13 13 O 1.21296 * 119.99553 * 0.02562 * 12 11 10 14 14 N 1.34778 * 120.00136 * 179.97438 * 12 11 10 15 15 C 1.37098 * 119.99570 * 179.97438 * 14 12 11 16 16 H 1.07999 * 120.00457 * 0.02562 * 15 14 12 17 17 C 1.38954 * 119.99701 * 179.97438 * 15 14 12 18 18 N 1.31415 * 120.00078 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00073 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47150 * 0.02562 * 19 17 15 21 21 H 1.48510 * 109.46866 * 120.00382 * 19 17 15 22 22 H 1.48499 * 109.47597 * 240.00175 * 19 17 15 23 23 C 1.46889 * 111.26846 * 296.75274 * 10 9 8 24 24 C 1.47084 * 120.87765 * 180.02562 * 7 5 3 25 25 C 1.52994 * 109.47756 * 264.07174 * 3 2 1 26 26 C 1.52999 * 117.49719 * 301.39091 * 25 3 2 27 27 C 1.53000 * 60.03778 * 107.47181 * 26 25 3 28 28 H 1.09001 * 109.47174 * 54.69505 * 1 2 3 29 29 H 1.09004 * 109.47536 * 174.69561 * 1 2 3 30 30 H 1.09004 * 109.47547 * 294.70028 * 1 2 3 31 31 H 1.09000 * 109.62529 * 248.52453 * 8 7 5 32 32 H 1.08998 * 109.62543 * 9.10529 * 8 7 5 33 33 H 1.08993 * 109.65073 * 294.07648 * 9 8 7 34 34 H 1.09009 * 109.41669 * 173.94393 * 9 8 7 35 35 H 1.08997 * 109.47546 * 54.30603 * 11 10 9 36 36 H 1.09004 * 109.47174 * 174.29935 * 11 10 9 37 37 H 0.96999 * 120.00080 * 0.02562 * 14 12 11 38 38 H 0.96998 * 120.00447 * 179.97438 * 18 17 15 39 39 H 1.09004 * 109.49496 * 303.14512 * 23 10 9 40 40 H 1.09005 * 109.49421 * 183.06958 * 23 10 9 41 41 H 1.08993 * 109.62927 * 350.89474 * 24 7 5 42 42 H 1.09002 * 109.62242 * 111.47576 * 24 7 5 43 43 H 1.08997 * 115.56657 * 155.69851 * 25 3 2 44 44 H 1.08999 * 117.50208 * 214.97620 * 26 25 3 45 45 H 1.09003 * 117.49895 * 359.97175 * 26 25 3 46 46 H 1.09005 * 117.49593 * 107.49194 * 27 26 25 47 47 H 1.08994 * 117.50172 * 252.52766 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3008 2.0190 0.4192 5 6 3.2656 1.2963 0.8337 6 8 3.6765 0.2547 1.2997 7 7 3.9315 2.4457 1.0616 8 6 3.4539 3.7188 0.5009 9 6 3.3758 4.7479 1.6399 10 7 4.6763 4.8181 2.3194 11 6 4.6997 5.9121 3.2994 12 6 4.5905 7.2324 2.5812 13 8 4.5014 7.2593 1.3718 14 7 4.5908 8.3833 3.2827 15 6 4.4920 9.5844 2.6291 16 1 4.4135 9.6084 1.5523 17 6 4.4917 10.7709 3.3524 18 7 4.5867 10.7417 4.6628 19 14 4.3564 12.4074 2.4621 20 1 4.2616 12.1688 0.9994 21 1 3.1414 13.1243 2.9261 22 1 5.5579 13.2302 2.7530 23 6 5.0166 3.5370 2.9523 24 6 5.1590 2.4591 1.8719 25 6 2.3537 1.7109 -1.4347 26 6 3.3162 0.8106 -2.2119 27 6 1.8276 0.8228 -2.5652 28 1 -0.3633 0.5939 -0.8387 29 1 -0.3634 -1.0233 -0.0950 30 1 -0.3634 0.4294 0.9336 31 1 4.1492 4.0661 -0.2633 32 1 2.4652 3.5785 0.0640 33 1 2.6084 4.4475 2.3533 34 1 3.1273 5.7261 1.2281 35 1 3.8612 5.8021 3.9870 36 1 5.6347 5.8790 3.8587 37 1 4.6616 8.3617 4.2499 38 1 4.5869 11.5699 5.1677 39 1 4.2263 3.2534 3.6475 40 1 5.9581 3.6369 3.4926 41 1 5.2981 1.4855 2.3418 42 1 6.0146 2.6878 1.2365 43 1 2.4071 2.7836 -1.6204 44 1 4.0029 1.2910 -2.9089 45 1 3.7050 -0.0702 -1.7009 46 1 1.5349 1.3114 -3.4946 47 1 1.2370 -0.0497 -2.2862 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112812905.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:34 Heat of formation + Delta-G solvation = -86.354616 kcal Electronic energy + Delta-G solvation = -28507.246107 eV Core-core repulsion = 24497.962418 eV Total energy + Delta-G solvation = -4009.283689 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.69653 -40.43424 -39.39513 -38.40206 -36.89648 -36.03105 -35.39412 -33.24315 -32.42326 -30.63521 -29.52186 -27.43535 -26.93490 -25.49433 -24.67991 -23.37090 -22.84394 -21.55918 -21.04790 -20.15299 -19.82770 -18.36982 -17.98198 -17.79659 -17.47549 -16.73663 -16.60027 -16.39086 -16.07422 -16.02267 -15.66634 -15.48396 -15.31467 -15.24594 -15.21954 -14.46863 -14.14464 -13.94011 -13.80165 -13.51004 -13.21248 -13.00985 -12.87815 -12.78510 -12.40956 -12.37937 -12.33766 -12.30036 -12.21447 -12.15987 -12.07994 -11.68455 -11.42398 -11.32649 -10.85347 -10.45105 -10.31689 -9.97915 -9.79092 -9.22181 -8.44131 -5.92117 1.38283 1.44015 1.45611 1.57564 1.67779 2.08377 2.29649 2.68040 2.71209 2.86497 3.23368 3.37883 3.46164 3.61058 3.83138 3.85633 3.95941 4.07521 4.13874 4.18117 4.25964 4.27055 4.31123 4.44084 4.47301 4.51274 4.53486 4.55025 4.61041 4.72084 4.77613 4.82432 4.84143 4.92699 4.96319 5.03530 5.14259 5.28031 5.36736 5.44346 5.81284 6.00862 6.06219 6.13574 6.33114 6.63237 7.04856 7.16087 7.60120 8.14879 8.73548 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.020952 B = 0.002534 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.042630 B =11049.016920 C =11636.347790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.383 6.383 3 C 0.104 3.896 4 H 0.110 0.890 5 C 0.518 3.482 6 O -0.571 6.571 7 N -0.604 5.604 8 C 0.121 3.879 9 C 0.039 3.961 10 N -0.529 5.529 11 C 0.058 3.942 12 C 0.445 3.555 13 O -0.609 6.609 14 N -0.576 5.576 15 C -0.327 4.327 16 H 0.082 0.918 17 C -0.015 4.015 18 N -0.923 5.923 19 Si 0.991 3.009 20 H -0.271 1.271 21 H -0.273 1.273 22 H -0.274 1.274 23 C 0.047 3.953 24 C 0.120 3.880 25 C -0.189 4.189 26 C -0.178 4.178 27 C -0.147 4.147 28 H 0.065 0.935 29 H 0.101 0.899 30 H 0.047 0.953 31 H 0.079 0.921 32 H 0.111 0.889 33 H 0.035 0.965 34 H 0.086 0.914 35 H 0.065 0.935 36 H 0.112 0.888 37 H 0.395 0.605 38 H 0.276 0.724 39 H 0.038 0.962 40 H 0.106 0.894 41 H 0.091 0.909 42 H 0.079 0.921 43 H 0.137 0.863 44 H 0.104 0.896 45 H 0.072 0.928 46 H 0.116 0.884 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.042 -17.603 -7.472 20.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.301 6.301 3 C 0.042 3.958 4 H 0.128 0.872 5 C 0.306 3.694 6 O -0.450 6.450 7 N -0.338 5.338 8 C -0.001 4.001 9 C -0.089 4.089 10 N -0.255 5.255 11 C -0.073 4.073 12 C 0.232 3.768 13 O -0.495 6.495 14 N -0.213 5.213 15 C -0.456 4.456 16 H 0.100 0.900 17 C -0.214 4.214 18 N -0.564 5.564 19 Si 0.815 3.185 20 H -0.195 1.195 21 H -0.198 1.198 22 H -0.199 1.199 23 C -0.081 4.081 24 C -0.003 4.003 25 C -0.207 4.207 26 C -0.215 4.215 27 C -0.184 4.184 28 H 0.083 0.917 29 H 0.119 0.881 30 H 0.066 0.934 31 H 0.098 0.902 32 H 0.129 0.871 33 H 0.053 0.947 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.130 0.870 37 H 0.229 0.771 38 H 0.086 0.914 39 H 0.057 0.943 40 H 0.124 0.876 41 H 0.110 0.890 42 H 0.097 0.903 43 H 0.154 0.846 44 H 0.123 0.877 45 H 0.091 0.909 46 H 0.134 0.866 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.429 -18.074 -8.241 20.879 hybrid contribution -0.546 1.054 1.106 1.622 sum -6.974 -17.020 -7.135 19.729 Atomic orbital electron populations 1.23139 0.78738 1.04381 1.01339 1.87981 1.21797 1.25556 1.94763 1.21409 0.93083 0.87137 0.94128 0.87240 1.20849 0.85624 0.82836 0.80073 1.90662 1.69258 1.32316 1.52768 1.48186 1.26559 1.07479 1.51562 1.22100 1.01497 0.81022 0.95470 1.22664 0.89184 1.00730 0.96360 1.61476 1.31447 1.03172 1.29368 1.21729 1.03680 0.88630 0.93299 1.20660 0.82180 0.85920 0.88044 1.90455 1.55844 1.87644 1.15536 1.41957 1.64914 1.04920 1.09548 1.19690 1.48923 0.83810 0.93202 0.90030 1.26016 0.96570 1.02579 0.96259 1.69680 1.50605 1.29882 1.06263 0.84895 0.78128 0.77276 0.78213 1.19543 1.19820 1.19936 1.22538 1.02314 0.87838 0.95394 1.21714 0.86429 0.99191 0.92943 1.22910 1.07908 0.99168 0.90764 1.22850 0.94004 1.01308 1.03295 1.23025 0.95953 1.01447 0.97984 0.91674 0.88097 0.93396 0.90247 0.87124 0.94669 0.89584 0.91701 0.87040 0.77145 0.91446 0.94342 0.87612 0.89041 0.90297 0.84562 0.87718 0.90890 0.86625 0.88182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.99 113.37 1.13 1.40 16 2 O -0.38 -8.54 8.58 -129.99 -1.12 -9.66 16 3 C 0.10 2.10 2.14 29.85 0.06 2.17 16 4 H 0.11 1.74 7.02 -2.38 -0.02 1.73 16 5 C 0.52 13.82 6.81 87.66 0.60 14.42 16 6 O -0.57 -19.82 15.96 15.95 0.25 -19.57 16 7 N -0.60 -14.66 3.00 -816.95 -2.45 -17.11 16 8 C 0.12 2.74 5.61 86.50 0.49 3.23 16 9 C 0.04 1.11 5.27 86.54 0.46 1.56 16 10 N -0.53 -15.69 4.37 -898.81 -3.93 -19.61 16 11 C 0.06 1.86 5.45 85.56 0.47 2.32 16 12 C 0.44 19.79 7.44 87.66 0.65 20.45 16 13 O -0.61 -30.97 13.91 -3.08 -0.04 -31.01 16 14 N -0.58 -28.28 5.29 -306.97 -1.62 -29.90 16 15 C -0.33 -17.85 9.68 84.04 0.81 -17.04 16 16 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 17 C -0.01 -0.77 5.50 84.93 0.47 -0.31 16 18 N -0.92 -48.90 13.05 21.66 0.28 -48.61 16 19 Si 0.99 41.85 29.55 68.60 2.03 43.88 16 20 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 21 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 22 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 23 C 0.05 1.11 5.62 86.40 0.49 1.59 16 24 C 0.12 2.86 6.60 86.36 0.57 3.43 16 25 C -0.19 -3.17 4.85 -10.77 -0.05 -3.22 16 26 C -0.18 -3.33 9.82 30.59 0.30 -3.03 16 27 C -0.15 -2.15 9.51 30.62 0.29 -1.86 16 28 H 0.06 0.65 7.61 -2.39 -0.02 0.63 16 29 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.05 0.60 8.14 -2.39 -0.02 0.59 16 31 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.11 1.87 4.65 -2.39 -0.01 1.86 16 33 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.09 3.01 5.76 -2.38 -0.01 3.00 16 35 H 0.07 1.90 8.12 -2.39 -0.02 1.88 16 36 H 0.11 3.15 7.97 -2.39 -0.02 3.13 16 37 H 0.39 18.58 7.90 -92.71 -0.73 17.85 16 38 H 0.28 13.72 8.31 -92.71 -0.77 12.95 16 39 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 40 H 0.11 2.10 7.99 -2.38 -0.02 2.08 16 41 H 0.09 2.26 7.06 -2.39 -0.02 2.24 16 42 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.14 1.88 6.57 -2.39 -0.02 1.87 16 44 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.12 1.24 8.14 -2.38 -0.02 1.22 16 47 H 0.10 1.53 6.30 -2.39 -0.02 1.51 16 Total: -1.00 -71.16 375.04 0.39 -70.77 By element: Atomic # 1 Polarization: 35.45 SS G_CDS: 0.26 Total: 35.71 kcal Atomic # 6 Polarization: 18.38 SS G_CDS: 6.73 Total: 25.11 kcal Atomic # 7 Polarization: -107.52 SS G_CDS: -7.72 Total: -115.24 kcal Atomic # 8 Polarization: -59.33 SS G_CDS: -0.90 Total: -60.23 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -71.16 0.39 -70.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112812905.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.588 kcal (2) G-P(sol) polarization free energy of solvation -71.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds