Wall clock time and date at job start Fri Apr 10 2020 18:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 113.99994 * 2 1 4 4 H 1.09000 * 109.47030 * 29.99862 * 3 2 1 5 5 C 1.50700 * 109.47443 * 269.99820 * 3 2 1 6 6 O 1.21281 * 119.99843 * 355.00219 * 5 3 2 7 7 N 1.34773 * 119.99946 * 174.99666 * 5 3 2 8 8 C 1.47080 * 120.88287 * 359.72625 * 7 5 3 9 9 C 1.53702 * 108.27751 * 128.75114 * 8 7 5 10 10 N 1.46902 * 109.25583 * 54.08069 * 9 8 7 11 11 C 1.46898 * 111.00111 * 172.60724 * 10 9 8 12 12 C 1.50706 * 109.46970 * 294.30433 * 11 10 9 13 13 O 1.21288 * 119.99935 * 359.97438 * 12 11 10 14 14 N 1.34774 * 119.99764 * 180.02562 * 12 11 10 15 15 C 1.37094 * 120.00171 * 179.97438 * 14 12 11 16 16 H 1.08005 * 120.00085 * 359.97438 * 15 14 12 17 17 C 1.38952 * 120.00667 * 179.97438 * 15 14 12 18 18 N 1.31417 * 119.99574 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00471 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46913 * 59.99991 * 19 17 15 21 21 H 1.48495 * 109.47476 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47201 * 300.00293 * 19 17 15 23 23 C 1.46898 * 111.26974 * 296.75629 * 10 9 8 24 24 C 1.47085 * 120.87943 * 179.97438 * 7 5 3 25 25 C 1.53006 * 109.47148 * 149.99574 * 3 2 1 26 26 C 1.53000 * 117.49776 * 300.00308 * 25 3 2 27 27 C 1.52997 * 117.49537 * 8.62763 * 25 3 2 28 28 H 1.09001 * 109.46749 * 60.00020 * 1 2 3 29 29 H 1.09000 * 109.47099 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47453 * 300.00337 * 1 2 3 31 31 H 1.09003 * 109.62655 * 248.51482 * 8 7 5 32 32 H 1.08990 * 109.63043 * 9.10273 * 8 7 5 33 33 H 1.08996 * 109.64993 * 294.08411 * 9 8 7 34 34 H 1.08998 * 109.44329 * 173.95780 * 9 8 7 35 35 H 1.08997 * 109.47028 * 54.29972 * 11 10 9 36 36 H 1.09000 * 109.47225 * 174.30302 * 11 10 9 37 37 H 0.97003 * 120.00002 * 359.97438 * 14 12 11 38 38 H 0.96994 * 119.99728 * 179.97438 * 18 17 15 39 39 H 1.08991 * 109.49740 * 303.14568 * 23 10 9 40 40 H 1.09002 * 109.49182 * 183.05854 * 23 10 9 41 41 H 1.08999 * 109.62697 * 350.90402 * 24 7 5 42 42 H 1.09004 * 109.62515 * 111.48125 * 24 7 5 43 43 H 1.09002 * 115.56020 * 154.30891 * 25 3 2 44 44 H 1.08990 * 117.49990 * 359.97438 * 26 25 3 45 45 H 1.09004 * 117.49237 * 214.97568 * 26 25 3 46 46 H 1.08999 * 117.49685 * 145.02116 * 27 25 3 47 47 H 1.08999 * 117.52022 * 359.97438 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9993 0.5138 5 6 2.2146 1.7644 -1.4208 6 8 1.9792 1.0106 -2.3413 7 7 2.6589 3.0125 -1.6685 8 6 2.9446 3.9445 -0.5672 9 6 4.3570 4.5148 -0.7725 10 7 4.4540 5.0959 -2.1182 11 6 5.7276 5.8064 -2.2943 12 6 5.7675 7.0009 -1.3763 13 8 4.8273 7.2372 -0.6474 14 7 6.8475 7.8070 -1.3659 15 6 6.8838 8.8939 -0.5312 16 1 6.0466 9.1044 0.1179 17 6 7.9974 9.7248 -0.5201 18 7 9.0159 9.4689 -1.3102 19 14 8.0464 11.2061 0.6168 20 1 7.9228 10.7531 2.0256 21 1 9.3337 11.9246 0.4385 22 1 6.9213 12.1185 0.2897 23 6 4.2752 4.0710 -3.1553 24 6 2.8657 3.4803 -3.0475 25 6 3.3589 1.2633 0.7214 26 6 3.3634 0.8186 2.1853 27 6 3.9138 -0.1109 1.1017 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 2.2149 4.7543 -0.5742 32 1 2.8974 3.4135 0.3835 33 1 5.0930 3.7179 -0.6666 34 1 4.5480 5.2877 -0.0280 35 1 6.5534 5.1365 -2.0551 36 1 5.8178 6.1396 -3.3282 37 1 7.5993 7.6181 -1.9492 38 1 9.7932 10.0491 -1.3028 39 1 5.0122 3.2802 -3.0162 40 1 4.4062 4.5221 -4.1389 41 1 2.7662 2.6423 -3.7373 42 1 2.1285 4.2462 -3.2887 43 1 4.0743 2.0308 0.4262 44 1 2.4056 0.5566 2.6347 45 1 4.0818 1.2938 2.8533 46 1 4.9943 -0.2472 1.0570 47 1 3.3182 -0.9850 0.8386 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112812906.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:39 Heat of formation + Delta-G solvation = -64.100201 kcal Electronic energy + Delta-G solvation = -28616.363357 eV Core-core repulsion = 24608.044692 eV Total energy + Delta-G solvation = -4008.318665 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 3.40 seconds Orbital eigenvalues (eV) -40.72354 -39.01837 -38.09966 -37.19390 -36.30410 -34.51878 -33.80974 -31.40209 -31.29287 -29.50908 -28.38776 -26.52278 -25.59682 -23.92041 -23.60517 -22.55721 -21.62706 -21.05971 -19.36382 -19.06124 -17.93087 -17.52897 -17.01804 -16.41104 -16.08666 -15.74774 -15.40273 -15.10834 -14.86933 -14.66461 -14.57821 -14.50295 -14.06992 -13.83188 -13.67239 -13.50817 -13.21747 -12.94064 -12.45211 -12.03069 -11.82895 -11.73486 -11.60890 -11.56984 -11.55649 -11.28191 -11.17416 -11.16136 -10.91454 -10.78220 -10.63822 -10.47499 -10.36893 -10.25441 -9.51340 -9.33203 -8.89464 -8.41490 -8.03111 -7.93478 -6.45777 -3.86878 2.42571 2.75392 3.16658 3.23201 3.26917 3.38144 3.62376 3.83761 3.90425 4.18927 4.21530 4.45014 4.61266 4.74276 4.83618 4.92474 4.96235 5.03850 5.05184 5.12186 5.19571 5.20631 5.24287 5.32347 5.38267 5.42834 5.47107 5.48164 5.66232 5.69740 5.76333 5.81414 5.86191 5.87588 6.04020 6.10414 6.13418 6.21137 6.42164 6.72449 7.09545 7.25900 7.34078 7.50943 8.01406 8.05521 8.56666 9.13400 9.49569 10.00645 10.71772 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.020530 B = 0.002639 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.506529 B =10605.665695 C =11288.385297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.356 6.356 3 C 0.107 3.893 4 H 0.089 0.911 5 C 0.497 3.503 6 O -0.533 6.533 7 N -0.609 5.609 8 C 0.105 3.895 9 C 0.039 3.961 10 N -0.514 5.514 11 C 0.046 3.954 12 C 0.443 3.557 13 O -0.579 6.579 14 N -0.562 5.562 15 C -0.300 4.300 16 H 0.103 0.897 17 C 0.023 3.977 18 N -0.901 5.901 19 Si 0.931 3.069 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.273 1.273 23 C 0.041 3.959 24 C 0.118 3.882 25 C -0.170 4.170 26 C -0.166 4.166 27 C -0.158 4.158 28 H 0.045 0.955 29 H 0.090 0.910 30 H 0.042 0.958 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.027 0.973 34 H 0.117 0.883 35 H 0.048 0.952 36 H 0.090 0.910 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.035 0.965 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.076 0.924 43 H 0.124 0.876 44 H 0.096 0.904 45 H 0.100 0.900 46 H 0.094 0.906 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.892 -16.383 2.078 19.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.273 6.273 3 C 0.045 3.955 4 H 0.107 0.893 5 C 0.284 3.716 6 O -0.409 6.409 7 N -0.344 5.344 8 C -0.018 4.018 9 C -0.089 4.089 10 N -0.239 5.239 11 C -0.085 4.085 12 C 0.228 3.772 13 O -0.464 6.464 14 N -0.199 5.199 15 C -0.430 4.430 16 H 0.121 0.879 17 C -0.179 4.179 18 N -0.542 5.542 19 Si 0.758 3.242 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.088 4.088 24 C -0.004 4.004 25 C -0.189 4.189 26 C -0.203 4.203 27 C -0.195 4.195 28 H 0.064 0.936 29 H 0.108 0.892 30 H 0.061 0.939 31 H 0.101 0.899 32 H 0.109 0.891 33 H 0.045 0.955 34 H 0.135 0.865 35 H 0.066 0.934 36 H 0.108 0.892 37 H 0.225 0.775 38 H 0.082 0.918 39 H 0.053 0.947 40 H 0.105 0.895 41 H 0.111 0.889 42 H 0.094 0.906 43 H 0.142 0.858 44 H 0.115 0.885 45 H 0.118 0.882 46 H 0.112 0.888 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.741 -16.369 2.004 20.243 hybrid contribution 1.144 0.500 0.101 1.252 sum -10.597 -15.869 2.105 19.198 Atomic orbital electron populations 1.22864 0.80625 1.03189 1.00090 1.87964 1.19972 1.24928 1.94388 1.21398 0.95419 0.86559 0.92119 0.89296 1.21201 0.77152 0.81250 0.91959 1.90678 1.50811 1.53418 1.46038 1.48298 1.65456 1.12577 1.08113 1.22207 0.97898 0.92568 0.89112 1.22724 0.94637 0.98731 0.92813 1.61498 1.33792 1.26284 1.02278 1.21859 0.90032 0.95684 1.00934 1.19697 0.84508 0.85805 0.87153 1.90470 1.36687 1.74372 1.44837 1.41870 1.16281 1.24235 1.37479 1.19641 1.03314 1.02119 1.17885 0.87920 1.25270 0.95167 0.99494 0.97963 1.69603 1.06723 1.39510 1.38396 0.85918 0.77416 0.80749 0.80145 1.19899 1.20982 1.19869 1.22499 0.96200 0.93570 0.96548 1.21692 0.96560 0.99276 0.82906 1.22436 0.96708 1.01387 0.98328 1.22973 1.03304 1.03608 0.90401 1.22882 1.00794 0.93845 1.01934 0.93650 0.89202 0.93903 0.89859 0.89123 0.95459 0.86531 0.93437 0.89153 0.77475 0.91773 0.94678 0.89456 0.88919 0.90557 0.85796 0.88546 0.88207 0.88782 0.87448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.81 101.05 1.09 1.34 16 2 O -0.36 -4.12 8.24 -55.09 -0.45 -4.58 16 3 C 0.11 1.17 2.05 -27.88 -0.06 1.11 16 4 H 0.09 0.81 7.38 -51.93 -0.38 0.43 16 5 C 0.50 6.76 7.07 -10.99 -0.08 6.68 16 6 O -0.53 -9.01 15.96 -14.30 -0.23 -9.24 16 7 N -0.61 -7.76 3.00 -172.20 -0.52 -8.27 16 8 C 0.10 1.27 5.63 -3.36 -0.02 1.25 16 9 C 0.04 0.58 5.15 -3.46 -0.02 0.56 16 10 N -0.51 -8.00 4.37 -235.49 -1.03 -9.03 16 11 C 0.05 0.78 5.45 -4.97 -0.03 0.75 16 12 C 0.44 9.88 7.44 -10.98 -0.08 9.80 16 13 O -0.58 -14.56 13.91 5.55 0.08 -14.49 16 14 N -0.56 -13.71 5.29 -10.96 -0.06 -13.77 16 15 C -0.30 -8.09 9.68 -14.93 -0.14 -8.23 16 16 H 0.10 2.89 7.16 -52.48 -0.38 2.51 16 17 C 0.02 0.60 5.50 -17.46 -0.10 0.50 16 18 N -0.90 -24.01 13.05 55.50 0.72 -23.29 16 19 Si 0.93 20.55 29.55 -169.99 -5.02 15.53 16 20 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 23 C 0.04 0.52 5.62 -3.72 -0.02 0.50 16 24 C 0.12 1.48 6.59 -3.62 -0.02 1.46 16 25 C -0.17 -1.71 4.45 -90.62 -0.40 -2.12 16 26 C -0.17 -1.39 10.19 -26.73 -0.27 -1.66 16 27 C -0.16 -1.52 9.87 -26.73 -0.26 -1.78 16 28 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.04 0.29 8.08 -51.93 -0.42 -0.13 16 31 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.09 0.91 4.51 -51.93 -0.23 0.67 16 33 H 0.03 0.38 7.68 -51.93 -0.40 -0.02 16 34 H 0.12 2.05 5.77 -51.93 -0.30 1.75 16 35 H 0.05 0.75 8.12 -51.93 -0.42 0.32 16 36 H 0.09 1.38 7.97 -51.93 -0.41 0.97 16 37 H 0.39 9.20 7.90 -40.82 -0.32 8.88 16 38 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 39 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.09 0.99 7.99 -51.93 -0.41 0.57 16 41 H 0.09 1.18 7.06 -51.93 -0.37 0.81 16 42 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.12 1.30 5.81 -51.93 -0.30 0.99 16 44 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 47 H 0.11 1.12 7.06 -51.93 -0.37 0.76 16 LS Contribution 376.14 15.07 5.67 5.67 Total: -1.00 -32.20 376.14 -8.49 -40.69 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -7.24 Total: 10.62 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: -0.41 Total: 10.17 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: -0.88 Total: -54.36 kcal Atomic # 8 Polarization: -27.70 SS G_CDS: -0.61 Total: -28.30 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.20 -8.49 -40.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112812906.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.413 kcal (2) G-P(sol) polarization free energy of solvation -32.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.40 seconds