Wall clock time and date at job start Fri Apr 10 2020 18:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 113.99994 * 2 1 4 4 H 1.09000 * 109.47030 * 29.99862 * 3 2 1 5 5 C 1.50700 * 109.47443 * 269.99820 * 3 2 1 6 6 O 1.21281 * 119.99843 * 355.00219 * 5 3 2 7 7 N 1.34773 * 119.99946 * 174.99666 * 5 3 2 8 8 C 1.47080 * 120.88287 * 359.72625 * 7 5 3 9 9 C 1.53702 * 108.27751 * 128.75114 * 8 7 5 10 10 N 1.46902 * 109.25583 * 54.08069 * 9 8 7 11 11 C 1.46898 * 111.00111 * 172.60724 * 10 9 8 12 12 C 1.50706 * 109.46970 * 294.30433 * 11 10 9 13 13 O 1.21288 * 119.99935 * 359.97438 * 12 11 10 14 14 N 1.34774 * 119.99764 * 180.02562 * 12 11 10 15 15 C 1.37094 * 120.00171 * 179.97438 * 14 12 11 16 16 H 1.08005 * 120.00085 * 359.97438 * 15 14 12 17 17 C 1.38952 * 120.00667 * 179.97438 * 15 14 12 18 18 N 1.31417 * 119.99574 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00471 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46913 * 59.99991 * 19 17 15 21 21 H 1.48495 * 109.47476 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47201 * 300.00293 * 19 17 15 23 23 C 1.46898 * 111.26974 * 296.75629 * 10 9 8 24 24 C 1.47085 * 120.87943 * 179.97438 * 7 5 3 25 25 C 1.53006 * 109.47148 * 149.99574 * 3 2 1 26 26 C 1.53000 * 117.49776 * 300.00308 * 25 3 2 27 27 C 1.52997 * 117.49537 * 8.62763 * 25 3 2 28 28 H 1.09001 * 109.46749 * 60.00020 * 1 2 3 29 29 H 1.09000 * 109.47099 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47453 * 300.00337 * 1 2 3 31 31 H 1.09003 * 109.62655 * 248.51482 * 8 7 5 32 32 H 1.08990 * 109.63043 * 9.10273 * 8 7 5 33 33 H 1.08996 * 109.64993 * 294.08411 * 9 8 7 34 34 H 1.08998 * 109.44329 * 173.95780 * 9 8 7 35 35 H 1.08997 * 109.47028 * 54.29972 * 11 10 9 36 36 H 1.09000 * 109.47225 * 174.30302 * 11 10 9 37 37 H 0.97003 * 120.00002 * 359.97438 * 14 12 11 38 38 H 0.96994 * 119.99728 * 179.97438 * 18 17 15 39 39 H 1.08991 * 109.49740 * 303.14568 * 23 10 9 40 40 H 1.09002 * 109.49182 * 183.05854 * 23 10 9 41 41 H 1.08999 * 109.62697 * 350.90402 * 24 7 5 42 42 H 1.09004 * 109.62515 * 111.48125 * 24 7 5 43 43 H 1.09002 * 115.56020 * 154.30891 * 25 3 2 44 44 H 1.08990 * 117.49990 * 359.97438 * 26 25 3 45 45 H 1.09004 * 117.49237 * 214.97568 * 26 25 3 46 46 H 1.08999 * 117.49685 * 145.02116 * 27 25 3 47 47 H 1.08999 * 117.52022 * 359.97438 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9993 0.5138 5 6 2.2146 1.7644 -1.4208 6 8 1.9792 1.0106 -2.3413 7 7 2.6589 3.0125 -1.6685 8 6 2.9446 3.9445 -0.5672 9 6 4.3570 4.5148 -0.7725 10 7 4.4540 5.0959 -2.1182 11 6 5.7276 5.8064 -2.2943 12 6 5.7675 7.0009 -1.3763 13 8 4.8273 7.2372 -0.6474 14 7 6.8475 7.8070 -1.3659 15 6 6.8838 8.8939 -0.5312 16 1 6.0466 9.1044 0.1179 17 6 7.9974 9.7248 -0.5201 18 7 9.0159 9.4689 -1.3102 19 14 8.0464 11.2061 0.6168 20 1 7.9228 10.7531 2.0256 21 1 9.3337 11.9246 0.4385 22 1 6.9213 12.1185 0.2897 23 6 4.2752 4.0710 -3.1553 24 6 2.8657 3.4803 -3.0475 25 6 3.3589 1.2633 0.7214 26 6 3.3634 0.8186 2.1853 27 6 3.9138 -0.1109 1.1017 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 2.2149 4.7543 -0.5742 32 1 2.8974 3.4135 0.3835 33 1 5.0930 3.7179 -0.6666 34 1 4.5480 5.2877 -0.0280 35 1 6.5534 5.1365 -2.0551 36 1 5.8178 6.1396 -3.3282 37 1 7.5993 7.6181 -1.9492 38 1 9.7932 10.0491 -1.3028 39 1 5.0122 3.2802 -3.0162 40 1 4.4062 4.5221 -4.1389 41 1 2.7662 2.6423 -3.7373 42 1 2.1285 4.2462 -3.2887 43 1 4.0743 2.0308 0.4262 44 1 2.4056 0.5566 2.6347 45 1 4.0818 1.2938 2.8533 46 1 4.9943 -0.2472 1.0570 47 1 3.3182 -0.9850 0.8386 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112812906.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:38 Heat of formation + Delta-G solvation = -86.352927 kcal Electronic energy + Delta-G solvation = -28617.328308 eV Core-core repulsion = 24608.044692 eV Total energy + Delta-G solvation = -4009.283616 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -41.73406 -40.41880 -39.28577 -38.41693 -37.10867 -36.03147 -35.40596 -33.24507 -32.44189 -30.62175 -29.47763 -27.50542 -26.96779 -25.45919 -24.68519 -23.25581 -22.63419 -21.95107 -21.05278 -20.15870 -19.82259 -18.53730 -17.94512 -17.75013 -17.18519 -16.75580 -16.61175 -16.43250 -16.27108 -16.03585 -15.59096 -15.54331 -15.31647 -15.25208 -15.19756 -14.47373 -14.24350 -13.99413 -13.82244 -13.50967 -13.27082 -12.97753 -12.79194 -12.61282 -12.50803 -12.40839 -12.33404 -12.26962 -12.22451 -12.15381 -12.09236 -11.74366 -11.41150 -11.37708 -11.11471 -10.34269 -10.26832 -9.98239 -9.80804 -9.23405 -8.43795 -5.91983 1.40232 1.41594 1.43872 1.54175 1.77151 2.08345 2.29868 2.59471 2.71470 2.88753 3.23451 3.31216 3.37826 3.65257 3.83425 3.85855 3.96134 4.05467 4.10873 4.16716 4.23443 4.27102 4.34729 4.43793 4.45935 4.47813 4.50513 4.51758 4.60045 4.70532 4.79621 4.81038 4.83058 4.90364 4.97111 5.02739 5.19091 5.33110 5.35667 5.43866 5.80191 5.95500 6.05038 6.12351 6.30632 6.63204 7.01686 7.15843 7.59913 8.14711 8.73403 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.020530 B = 0.002639 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.506529 B =10605.665695 C =11288.385297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.373 6.373 3 C 0.109 3.891 4 H 0.111 0.889 5 C 0.495 3.505 6 O -0.571 6.571 7 N -0.607 5.607 8 C 0.114 3.886 9 C 0.042 3.958 10 N -0.529 5.529 11 C 0.058 3.942 12 C 0.444 3.556 13 O -0.609 6.609 14 N -0.575 5.575 15 C -0.329 4.329 16 H 0.082 0.918 17 C -0.014 4.014 18 N -0.923 5.923 19 Si 0.991 3.009 20 H -0.270 1.270 21 H -0.274 1.274 22 H -0.272 1.272 23 C 0.047 3.953 24 C 0.118 3.882 25 C -0.182 4.182 26 C -0.146 4.146 27 C -0.166 4.166 28 H 0.031 0.969 29 H 0.103 0.897 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.114 0.886 33 H 0.035 0.965 34 H 0.086 0.914 35 H 0.065 0.935 36 H 0.112 0.888 37 H 0.395 0.605 38 H 0.276 0.724 39 H 0.037 0.963 40 H 0.105 0.895 41 H 0.091 0.909 42 H 0.079 0.921 43 H 0.120 0.880 44 H 0.106 0.894 45 H 0.111 0.889 46 H 0.098 0.902 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.131 -16.764 2.740 20.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.290 6.290 3 C 0.048 3.952 4 H 0.128 0.872 5 C 0.284 3.716 6 O -0.450 6.450 7 N -0.341 5.341 8 C -0.008 4.008 9 C -0.086 4.086 10 N -0.254 5.254 11 C -0.073 4.073 12 C 0.232 3.768 13 O -0.495 6.495 14 N -0.213 5.213 15 C -0.458 4.458 16 H 0.100 0.900 17 C -0.214 4.214 18 N -0.564 5.564 19 Si 0.815 3.185 20 H -0.195 1.195 21 H -0.199 1.199 22 H -0.198 1.198 23 C -0.081 4.081 24 C -0.005 4.005 25 C -0.200 4.200 26 C -0.183 4.183 27 C -0.203 4.203 28 H 0.050 0.950 29 H 0.121 0.879 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.132 0.868 33 H 0.053 0.947 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.130 0.870 37 H 0.229 0.771 38 H 0.086 0.914 39 H 0.055 0.945 40 H 0.124 0.876 41 H 0.109 0.891 42 H 0.098 0.902 43 H 0.137 0.863 44 H 0.124 0.876 45 H 0.130 0.870 46 H 0.117 0.883 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -11.981 -16.757 2.662 20.771 hybrid contribution 1.152 0.551 -0.132 1.284 sum -10.830 -16.206 2.530 19.655 Atomic orbital electron populations 1.23034 0.79360 1.04315 1.00526 1.87949 1.21462 1.25300 1.94312 1.21464 0.96388 0.86878 0.90481 0.87193 1.21753 0.76210 0.80872 0.92815 1.90655 1.52575 1.54372 1.47440 1.48348 1.64919 1.12511 1.08320 1.22151 0.96160 0.92498 0.89978 1.22613 0.96369 0.97897 0.91747 1.61479 1.33015 1.27593 1.03326 1.21730 0.91479 0.93737 1.00396 1.20643 0.83140 0.86325 0.86726 1.90452 1.37606 1.75356 1.46086 1.41943 1.17157 1.24416 1.37741 1.19622 1.03366 1.03876 1.18981 0.90009 1.26018 0.94534 1.01668 0.99155 1.69671 1.07049 1.40408 1.39240 0.85014 0.77670 0.77528 0.78312 1.19549 1.19858 1.19765 1.22519 0.96227 0.92914 0.96451 1.21707 0.96573 0.99242 0.82975 1.22415 0.96261 1.01536 0.99783 1.23048 1.03832 1.01926 0.89476 1.22892 1.00980 0.93404 1.03055 0.94982 0.87890 0.91589 0.90347 0.86782 0.94683 0.89577 0.91735 0.87039 0.77147 0.91426 0.94462 0.87632 0.89065 0.90238 0.86251 0.87590 0.87035 0.88344 0.88465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.81 113.37 1.23 1.60 16 2 O -0.37 -8.18 8.24 -129.99 -1.07 -9.25 16 3 C 0.11 2.22 2.05 29.85 0.06 2.29 16 4 H 0.11 1.74 7.38 -2.39 -0.02 1.72 16 5 C 0.49 13.00 7.07 87.66 0.62 13.62 16 6 O -0.57 -19.18 15.96 15.96 0.25 -18.93 16 7 N -0.61 -14.73 3.00 -817.11 -2.45 -17.19 16 8 C 0.11 2.64 5.63 86.51 0.49 3.13 16 9 C 0.04 1.20 5.15 86.54 0.45 1.65 16 10 N -0.53 -15.78 4.37 -898.95 -3.93 -19.70 16 11 C 0.06 1.87 5.45 85.56 0.47 2.33 16 12 C 0.44 19.85 7.44 87.66 0.65 20.50 16 13 O -0.61 -31.06 13.91 -3.05 -0.04 -31.10 16 14 N -0.58 -28.32 5.29 -306.98 -1.62 -29.94 16 15 C -0.33 -18.01 9.68 84.04 0.81 -17.19 16 16 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 17 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 18 N -0.92 -48.96 13.05 21.66 0.28 -48.67 16 19 Si 0.99 41.89 29.55 68.60 2.03 43.92 16 20 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 21 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 22 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 23 C 0.05 1.11 5.62 86.37 0.49 1.60 16 24 C 0.12 2.80 6.59 86.34 0.57 3.37 16 25 C -0.18 -3.34 4.45 -10.79 -0.05 -3.39 16 26 C -0.15 -2.09 10.19 30.60 0.31 -1.78 16 27 C -0.17 -2.98 9.87 30.60 0.30 -2.68 16 28 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.07 0.74 8.08 -2.39 -0.02 0.72 16 31 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.11 2.08 4.51 -2.39 -0.01 2.07 16 33 H 0.04 0.94 7.68 -2.39 -0.02 0.92 16 34 H 0.09 3.04 5.77 -2.39 -0.01 3.03 16 35 H 0.06 1.91 8.12 -2.39 -0.02 1.89 16 36 H 0.11 3.17 7.97 -2.39 -0.02 3.15 16 37 H 0.39 18.64 7.90 -92.71 -0.73 17.91 16 38 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 39 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.11 2.12 7.99 -2.39 -0.02 2.10 16 41 H 0.09 2.24 7.06 -2.39 -0.02 2.22 16 42 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 43 H 0.12 2.30 5.81 -2.39 -0.01 2.29 16 44 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 46 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.10 1.96 7.06 -2.39 -0.02 1.94 16 Total: -1.00 -69.72 376.14 0.56 -69.15 By element: Atomic # 1 Polarization: 36.70 SS G_CDS: 0.26 Total: 36.96 kcal Atomic # 6 Polarization: 17.91 SS G_CDS: 6.86 Total: 24.76 kcal Atomic # 7 Polarization: -107.78 SS G_CDS: -7.72 Total: -115.50 kcal Atomic # 8 Polarization: -58.43 SS G_CDS: -0.86 Total: -59.29 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -69.72 0.56 -69.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112812906.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.199 kcal (2) G-P(sol) polarization free energy of solvation -69.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds