Wall clock time and date at job start Fri Apr 10 2020 18:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46737 * 2 1 4 4 C 1.53000 * 109.46737 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.46737 * 179.97438 * 4 3 2 6 6 H 1.08995 * 109.47198 * 304.99854 * 5 4 3 7 7 C 1.53009 * 109.47141 * 65.00334 * 5 4 3 8 8 C 1.50701 * 109.46947 * 185.00037 * 5 4 3 9 9 O 1.21282 * 119.99879 * 353.22744 * 8 5 4 10 10 N 1.34783 * 119.99822 * 173.23141 * 8 5 4 11 11 C 1.47075 * 120.87975 * 355.07504 * 10 8 5 12 12 C 1.53246 * 108.51659 * 231.16181 * 11 10 8 13 13 N 1.46896 * 109.34300 * 306.17322 * 12 11 10 14 14 C 1.46895 * 111.00005 * 187.25544 * 13 12 11 15 15 C 1.50699 * 109.47019 * 299.19526 * 14 13 12 16 16 O 1.21294 * 120.00501 * 0.68939 * 15 14 13 17 17 N 1.34779 * 120.00326 * 180.69363 * 15 14 13 18 18 C 1.37094 * 120.00582 * 179.97438 * 17 15 14 19 19 H 1.08008 * 119.99976 * 359.97438 * 18 17 15 20 20 C 1.38948 * 120.00609 * 179.97438 * 18 17 15 21 21 N 1.31408 * 120.00346 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99689 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47342 * 89.99807 * 22 20 18 24 24 H 1.48501 * 109.47044 * 210.00187 * 22 20 18 25 25 H 1.48500 * 109.46767 * 329.99865 * 22 20 18 26 26 C 1.46899 * 111.27016 * 63.10387 * 13 12 11 27 27 C 1.47079 * 120.87939 * 175.05325 * 10 8 5 28 28 H 1.09007 * 109.46987 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47369 * 299.99880 * 1 2 3 30 30 H 1.09000 * 109.47766 * 59.99922 * 1 2 3 31 31 H 1.08994 * 109.47085 * 240.00535 * 2 1 3 32 32 H 1.08997 * 109.47099 * 119.99748 * 2 1 3 33 33 H 1.09005 * 109.47355 * 60.00251 * 3 2 1 34 34 H 1.08997 * 109.47120 * 299.99735 * 3 2 1 35 35 H 1.08994 * 109.47085 * 60.00535 * 4 3 2 36 36 H 1.08997 * 109.47099 * 299.99748 * 4 3 2 37 37 H 1.08996 * 109.47002 * 184.85530 * 7 5 4 38 38 H 1.08998 * 109.46392 * 304.85542 * 7 5 4 39 39 H 1.08996 * 109.47221 * 64.85493 * 7 5 4 40 40 H 1.08998 * 109.63150 * 350.87416 * 11 10 8 41 41 H 1.08998 * 109.62959 * 111.46012 * 11 10 8 42 42 H 1.08999 * 109.49245 * 66.13801 * 12 11 10 43 43 H 1.09005 * 109.49033 * 186.20994 * 12 11 10 44 44 H 1.09002 * 109.47404 * 59.18848 * 14 13 12 45 45 H 1.09003 * 109.47532 * 179.19540 * 14 13 12 46 46 H 0.96998 * 119.99762 * 359.97438 * 17 15 14 47 47 H 0.97003 * 119.99784 * 180.02562 * 21 20 18 48 48 H 1.08991 * 109.49199 * 176.93557 * 26 13 12 49 49 H 1.08998 * 109.48968 * 56.85388 * 26 13 12 50 50 H 1.09000 * 109.62886 * 248.54677 * 27 10 8 51 51 H 1.09004 * 109.62531 * 9.12777 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0798 2.8851 -0.0013 6 1 3.6449 3.4239 -0.8430 7 6 3.6756 3.5696 1.3061 8 6 5.5817 2.8870 -0.1258 9 8 6.1950 1.8415 -0.0825 10 7 6.2433 4.0504 -0.2851 11 6 5.5141 5.3172 -0.4479 12 6 6.0558 6.0346 -1.6890 13 7 7.5144 6.1675 -1.5763 14 6 8.0525 6.9994 -2.6608 15 6 7.7433 6.3562 -3.9881 16 8 7.1236 5.3143 -4.0275 17 7 8.1553 6.9386 -5.1316 18 6 7.8745 6.3533 -6.3390 19 1 7.3233 5.4251 -6.3740 20 6 8.2988 6.9540 -7.5179 21 7 8.0300 6.3926 -8.6752 22 14 9.2527 8.5590 -7.4575 23 1 10.7065 8.2680 -7.3741 24 1 8.9750 9.3463 -8.6855 25 1 8.8347 9.3385 -6.2646 26 6 8.1686 4.8525 -1.5473 27 6 7.7135 4.0867 -0.3005 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 3.9328 0.9290 -0.8909 36 1 3.9336 0.9287 0.8891 37 1 3.9629 4.6204 1.2700 38 1 2.5964 3.4922 1.4380 39 1 4.1796 3.0836 2.1415 40 1 4.4510 5.1139 -0.5772 41 1 5.6657 5.9427 0.4318 42 1 5.8109 5.4558 -2.5795 43 1 5.6049 7.0243 -1.7627 44 1 7.5956 7.9883 -2.6212 45 1 9.1323 7.0931 -2.5453 46 1 8.6506 7.7720 -5.1002 47 1 8.3267 6.8119 -9.4981 48 1 9.2500 4.9849 -1.5184 49 1 7.8943 4.2901 -2.4398 50 1 8.0766 4.5938 0.5935 51 1 8.1046 3.0698 -0.3324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112820176.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:52 Heat of formation + Delta-G solvation = -75.742130 kcal Electronic energy + Delta-G solvation = -28682.521228 eV Core-core repulsion = 24809.530825 eV Total energy + Delta-G solvation = -3872.990403 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -40.42828 -39.14204 -37.25503 -36.38012 -34.60914 -33.85599 -33.40033 -31.79778 -30.98420 -29.18741 -28.48537 -26.03144 -25.18954 -23.78891 -23.64490 -22.39707 -21.20050 -20.33393 -19.53641 -18.87218 -18.18450 -17.11279 -16.12298 -16.02763 -15.90551 -15.30950 -15.07523 -15.00038 -14.53045 -14.36473 -14.19680 -14.13154 -13.87423 -13.62041 -13.35319 -13.19529 -12.98705 -12.75240 -12.41003 -12.33538 -12.15203 -11.92428 -11.71277 -11.66233 -11.45508 -11.36506 -11.16229 -11.12154 -10.99248 -10.89920 -10.83382 -10.70194 -10.65389 -10.60441 -10.08599 -9.59822 -9.54272 -9.41283 -8.59602 -8.26635 -7.58525 -6.40456 -3.92010 2.72640 2.95891 3.00718 3.03954 3.09463 3.58440 4.02131 4.14407 4.38367 4.52965 4.58537 4.71071 4.88956 4.93221 4.97797 5.00779 5.08659 5.18400 5.22850 5.26553 5.32716 5.42667 5.45039 5.51040 5.56300 5.59237 5.60357 5.67767 5.73690 5.76186 5.77996 5.81694 5.83183 5.84227 5.89625 5.93565 6.01648 6.04194 6.20137 6.27244 6.41849 6.54740 6.59846 7.08694 7.23384 7.46500 7.52268 8.05372 8.26818 8.47904 8.84959 9.32375 9.70290 10.72251 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.015804 B = 0.002630 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.312826 B =10644.923605 C =11680.482554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.100 4.100 5 C -0.111 4.111 6 H 0.096 0.904 7 C -0.146 4.146 8 C 0.520 3.480 9 O -0.546 6.546 10 N -0.607 5.607 11 C 0.115 3.885 12 C 0.018 3.982 13 N -0.512 5.512 14 C 0.039 3.961 15 C 0.412 3.588 16 O -0.576 6.576 17 N -0.582 5.582 18 C -0.308 4.308 19 H 0.119 0.881 20 C 0.043 3.957 21 N -0.877 5.877 22 Si 0.881 3.119 23 H -0.270 1.270 24 H -0.276 1.276 25 H -0.269 1.269 26 C 0.025 3.975 27 C 0.121 3.879 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.058 0.942 40 H 0.086 0.914 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.371 0.629 47 H 0.275 0.725 48 H 0.076 0.924 49 H 0.078 0.922 50 H 0.067 0.933 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.515 -1.205 20.138 21.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.137 4.137 5 C -0.133 4.133 6 H 0.114 0.886 7 C -0.204 4.204 8 C 0.309 3.691 9 O -0.424 6.424 10 N -0.341 5.341 11 C -0.008 4.008 12 C -0.110 4.110 13 N -0.235 5.235 14 C -0.093 4.093 15 C 0.198 3.802 16 O -0.461 6.461 17 N -0.220 5.220 18 C -0.437 4.437 19 H 0.136 0.864 20 C -0.161 4.161 21 N -0.516 5.516 22 Si 0.707 3.293 23 H -0.195 1.195 24 H -0.201 1.201 25 H -0.194 1.194 26 C -0.104 4.104 27 C -0.002 4.002 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.104 0.896 41 H 0.088 0.912 42 H 0.103 0.897 43 H 0.095 0.905 44 H 0.109 0.891 45 H 0.109 0.891 46 H 0.204 0.796 47 H 0.085 0.915 48 H 0.095 0.905 49 H 0.096 0.904 50 H 0.085 0.915 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.480 -2.225 20.342 22.150 hybrid contribution 0.704 1.161 -1.143 1.774 sum -7.776 -1.064 19.199 20.741 Atomic orbital electron populations 1.21779 0.96017 1.01467 1.01725 1.21523 0.95633 0.96989 1.02170 1.21701 0.95174 0.96882 1.02123 1.21400 0.94672 0.94189 1.03485 1.21321 0.92155 0.99315 1.00467 0.88625 1.21896 1.02159 1.00556 0.95773 1.20641 0.89986 0.82980 0.75506 1.90664 1.69728 1.31121 1.50877 1.48094 1.07119 1.07108 1.71731 1.21928 0.95992 0.84408 0.98478 1.22763 0.88513 1.01087 0.98680 1.62451 1.04747 1.14566 1.41763 1.22103 1.01435 0.97506 0.88238 1.21045 0.85516 0.87754 0.85849 1.90466 1.44420 1.24616 1.86572 1.42400 1.50193 1.22763 1.06633 1.19444 1.34602 1.08875 0.80821 0.86379 1.25088 0.97713 0.98323 0.94995 1.69626 1.45173 1.39345 0.97487 0.86656 0.80829 0.83337 0.78495 1.19527 1.20085 1.19397 1.22664 0.98517 0.90363 0.98842 1.21668 0.79290 1.01361 0.97888 0.92925 0.92883 0.92728 0.91922 0.92082 0.91755 0.91888 0.91199 0.91310 0.91797 0.91205 0.92245 0.89593 0.91166 0.89655 0.90504 0.89060 0.89104 0.79584 0.91486 0.90518 0.90384 0.91485 0.89101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.91 37.16 0.37 -0.72 16 2 C -0.13 -1.03 5.93 -26.73 -0.16 -1.19 16 3 C -0.12 -1.03 4.97 -26.73 -0.13 -1.16 16 4 C -0.10 -1.07 3.99 -26.73 -0.11 -1.18 16 5 C -0.11 -1.21 1.88 -91.76 -0.17 -1.38 16 6 H 0.10 0.99 7.08 -51.93 -0.37 0.63 16 7 C -0.15 -1.21 8.73 37.16 0.32 -0.89 16 8 C 0.52 7.63 7.00 -10.98 -0.08 7.55 16 9 O -0.55 -9.91 15.45 5.56 0.09 -9.82 16 10 N -0.61 -8.42 3.01 -172.46 -0.52 -8.94 16 11 C 0.12 1.34 5.15 -3.60 -0.02 1.32 16 12 C 0.02 0.26 5.14 -3.70 -0.02 0.24 16 13 N -0.51 -7.65 4.83 -235.77 -1.14 -8.79 16 14 C 0.04 0.61 5.83 -4.98 -0.03 0.58 16 15 C 0.41 8.78 7.20 -10.98 -0.08 8.70 16 16 O -0.58 -14.30 11.22 5.55 0.06 -14.23 16 17 N -0.58 -13.32 5.09 -10.96 -0.06 -13.37 16 18 C -0.31 -8.52 10.16 -14.94 -0.15 -8.67 16 19 H 0.12 3.76 7.39 -52.48 -0.39 3.37 16 20 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 21 N -0.88 -25.27 13.96 55.50 0.77 -24.49 16 22 Si 0.88 18.92 27.74 -169.99 -4.71 14.21 16 23 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 24 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 25 H -0.27 -5.22 6.52 56.52 0.37 -4.85 16 26 C 0.02 0.39 5.19 -3.70 -0.02 0.37 16 27 C 0.12 1.70 6.61 -3.60 -0.02 1.68 16 28 H 0.05 0.35 8.14 -51.92 -0.42 -0.07 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.48 6.47 -51.93 -0.34 0.14 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.89 8.06 -51.93 -0.42 0.47 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.48 6.05 -51.93 -0.31 0.17 16 38 H 0.07 0.47 6.35 -51.93 -0.33 0.14 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.09 0.84 5.14 -51.93 -0.27 0.57 16 41 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 42 H 0.09 1.61 5.60 -51.93 -0.29 1.32 16 43 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 44 H 0.09 1.24 8.13 -51.93 -0.42 0.81 16 45 H 0.09 1.25 8.09 -51.93 -0.42 0.83 16 46 H 0.37 7.46 5.76 -40.82 -0.24 7.22 16 47 H 0.27 7.29 8.31 -40.82 -0.34 6.96 16 48 H 0.08 1.10 8.07 -51.93 -0.42 0.68 16 49 H 0.08 1.57 5.86 -51.93 -0.30 1.27 16 50 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 51 H 0.09 1.38 7.04 -51.93 -0.37 1.02 16 LS Contribution 388.12 15.07 5.85 5.85 Total: -1.00 -32.83 388.12 -8.74 -41.57 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -8.69 Total: 11.72 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: -0.39 Total: 6.30 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: -0.94 Total: -55.59 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: 0.15 Total: -24.05 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -4.71 Total: 14.21 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.83 -8.74 -41.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112820176.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.174 kcal (2) G-P(sol) polarization free energy of solvation -32.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds