Wall clock time and date at job start Fri Apr 10 2020 18:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46737 * 2 1 4 4 C 1.53000 * 109.46737 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.46737 * 179.97438 * 4 3 2 6 6 H 1.08995 * 109.47198 * 304.99854 * 5 4 3 7 7 C 1.53009 * 109.47141 * 65.00334 * 5 4 3 8 8 C 1.50701 * 109.46947 * 185.00037 * 5 4 3 9 9 O 1.21282 * 119.99879 * 353.22744 * 8 5 4 10 10 N 1.34783 * 119.99822 * 173.23141 * 8 5 4 11 11 C 1.47075 * 120.87975 * 355.07504 * 10 8 5 12 12 C 1.53246 * 108.51659 * 231.16181 * 11 10 8 13 13 N 1.46896 * 109.34300 * 306.17322 * 12 11 10 14 14 C 1.46895 * 111.00005 * 187.25544 * 13 12 11 15 15 C 1.50699 * 109.47019 * 299.19526 * 14 13 12 16 16 O 1.21294 * 120.00501 * 0.68939 * 15 14 13 17 17 N 1.34779 * 120.00326 * 180.69363 * 15 14 13 18 18 C 1.37094 * 120.00582 * 179.97438 * 17 15 14 19 19 H 1.08008 * 119.99976 * 359.97438 * 18 17 15 20 20 C 1.38948 * 120.00609 * 179.97438 * 18 17 15 21 21 N 1.31408 * 120.00346 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99689 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47342 * 89.99807 * 22 20 18 24 24 H 1.48501 * 109.47044 * 210.00187 * 22 20 18 25 25 H 1.48500 * 109.46767 * 329.99865 * 22 20 18 26 26 C 1.46899 * 111.27016 * 63.10387 * 13 12 11 27 27 C 1.47079 * 120.87939 * 175.05325 * 10 8 5 28 28 H 1.09007 * 109.46987 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47369 * 299.99880 * 1 2 3 30 30 H 1.09000 * 109.47766 * 59.99922 * 1 2 3 31 31 H 1.08994 * 109.47085 * 240.00535 * 2 1 3 32 32 H 1.08997 * 109.47099 * 119.99748 * 2 1 3 33 33 H 1.09005 * 109.47355 * 60.00251 * 3 2 1 34 34 H 1.08997 * 109.47120 * 299.99735 * 3 2 1 35 35 H 1.08994 * 109.47085 * 60.00535 * 4 3 2 36 36 H 1.08997 * 109.47099 * 299.99748 * 4 3 2 37 37 H 1.08996 * 109.47002 * 184.85530 * 7 5 4 38 38 H 1.08998 * 109.46392 * 304.85542 * 7 5 4 39 39 H 1.08996 * 109.47221 * 64.85493 * 7 5 4 40 40 H 1.08998 * 109.63150 * 350.87416 * 11 10 8 41 41 H 1.08998 * 109.62959 * 111.46012 * 11 10 8 42 42 H 1.08999 * 109.49245 * 66.13801 * 12 11 10 43 43 H 1.09005 * 109.49033 * 186.20994 * 12 11 10 44 44 H 1.09002 * 109.47404 * 59.18848 * 14 13 12 45 45 H 1.09003 * 109.47532 * 179.19540 * 14 13 12 46 46 H 0.96998 * 119.99762 * 359.97438 * 17 15 14 47 47 H 0.97003 * 119.99784 * 180.02562 * 21 20 18 48 48 H 1.08991 * 109.49199 * 176.93557 * 26 13 12 49 49 H 1.08998 * 109.48968 * 56.85388 * 26 13 12 50 50 H 1.09000 * 109.62886 * 248.54677 * 27 10 8 51 51 H 1.09004 * 109.62531 * 9.12777 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0798 2.8851 -0.0013 6 1 3.6449 3.4239 -0.8430 7 6 3.6756 3.5696 1.3061 8 6 5.5817 2.8870 -0.1258 9 8 6.1950 1.8415 -0.0825 10 7 6.2433 4.0504 -0.2851 11 6 5.5141 5.3172 -0.4479 12 6 6.0558 6.0346 -1.6890 13 7 7.5144 6.1675 -1.5763 14 6 8.0525 6.9994 -2.6608 15 6 7.7433 6.3562 -3.9881 16 8 7.1236 5.3143 -4.0275 17 7 8.1553 6.9386 -5.1316 18 6 7.8745 6.3533 -6.3390 19 1 7.3233 5.4251 -6.3740 20 6 8.2988 6.9540 -7.5179 21 7 8.0300 6.3926 -8.6752 22 14 9.2527 8.5590 -7.4575 23 1 10.7065 8.2680 -7.3741 24 1 8.9750 9.3463 -8.6855 25 1 8.8347 9.3385 -6.2646 26 6 8.1686 4.8525 -1.5473 27 6 7.7135 4.0867 -0.3005 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 3.9328 0.9290 -0.8909 36 1 3.9336 0.9287 0.8891 37 1 3.9629 4.6204 1.2700 38 1 2.5964 3.4922 1.4380 39 1 4.1796 3.0836 2.1415 40 1 4.4510 5.1139 -0.5772 41 1 5.6657 5.9427 0.4318 42 1 5.8109 5.4558 -2.5795 43 1 5.6049 7.0243 -1.7627 44 1 7.5956 7.9883 -2.6212 45 1 9.1323 7.0931 -2.5453 46 1 8.6506 7.7720 -5.1002 47 1 8.3267 6.8119 -9.4981 48 1 9.2500 4.9849 -1.5184 49 1 7.8943 4.2901 -2.4398 50 1 8.0766 4.5938 0.5935 51 1 8.1046 3.0698 -0.3324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112820176.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:46 Heat of formation + Delta-G solvation = -100.032560 kcal Electronic energy + Delta-G solvation = -28683.574540 eV Core-core repulsion = 24809.530825 eV Total energy + Delta-G solvation = -3874.043715 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 5.93 seconds Orbital eigenvalues (eV) -41.61378 -40.65682 -38.60780 -37.28977 -36.20005 -35.35257 -34.28296 -33.80654 -32.09913 -30.36843 -29.37493 -27.48856 -26.20381 -25.17721 -24.81227 -23.38388 -22.05691 -21.45644 -21.27373 -20.36581 -19.63438 -18.23689 -17.79430 -17.18082 -16.85781 -16.76063 -16.29440 -16.14833 -15.90806 -15.75482 -15.58773 -15.07152 -15.05547 -14.92613 -14.53092 -14.26249 -14.20457 -14.02272 -13.63416 -13.40902 -13.17777 -13.05211 -12.98948 -12.76838 -12.58670 -12.45258 -12.29015 -12.13263 -12.11363 -12.06495 -12.01087 -11.88065 -11.82842 -11.53991 -11.41442 -11.35143 -11.07898 -10.66620 -10.25404 -9.77571 -9.05639 -8.45295 -6.06162 1.28128 1.33509 1.42881 1.58927 1.89544 1.98383 2.20331 2.92036 2.94928 3.11859 3.43208 3.72307 3.92020 3.92895 4.02481 4.12267 4.16944 4.20176 4.24400 4.28101 4.34543 4.41368 4.53651 4.55224 4.59427 4.62016 4.66902 4.72186 4.77381 4.81903 4.83570 4.91249 5.00272 5.02971 5.07735 5.09185 5.20837 5.27886 5.29046 5.36092 5.46128 5.47668 5.49475 5.53129 5.81113 5.93919 5.96873 6.41689 6.54255 6.85047 7.13342 7.35657 7.92770 8.72434 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.015804 B = 0.002630 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.312826 B =10644.923605 C =11680.482554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.128 4.128 3 C -0.113 4.113 4 C -0.096 4.096 5 C -0.107 4.107 6 H 0.102 0.898 7 C -0.139 4.139 8 C 0.509 3.491 9 O -0.593 6.593 10 N -0.611 5.611 11 C 0.118 3.882 12 C 0.016 3.984 13 N -0.494 5.494 14 C 0.047 3.953 15 C 0.414 3.586 16 O -0.615 6.615 17 N -0.587 5.587 18 C -0.328 4.328 19 H 0.050 0.950 20 C -0.017 4.017 21 N -0.935 5.935 22 Si 0.967 3.033 23 H -0.259 1.259 24 H -0.276 1.276 25 H -0.226 1.226 26 C 0.030 3.970 27 C 0.124 3.876 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.063 0.937 35 H 0.038 0.962 36 H 0.060 0.940 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.053 0.947 40 H 0.106 0.894 41 H 0.103 0.897 42 H 0.035 0.965 43 H 0.102 0.898 44 H 0.129 0.871 45 H 0.122 0.878 46 H 0.390 0.610 47 H 0.279 0.721 48 H 0.093 0.907 49 H 0.024 0.976 50 H 0.096 0.904 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.599 2.716 23.346 25.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C -0.151 4.151 4 C -0.134 4.134 5 C -0.128 4.128 6 H 0.120 0.880 7 C -0.196 4.196 8 C 0.299 3.701 9 O -0.474 6.474 10 N -0.343 5.343 11 C -0.004 4.004 12 C -0.113 4.113 13 N -0.216 5.216 14 C -0.084 4.084 15 C 0.202 3.798 16 O -0.502 6.502 17 N -0.228 5.228 18 C -0.458 4.458 19 H 0.068 0.932 20 C -0.216 4.216 21 N -0.576 5.576 22 Si 0.786 3.214 23 H -0.183 1.183 24 H -0.201 1.201 25 H -0.149 1.149 26 C -0.099 4.099 27 C 0.001 3.999 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.057 0.943 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.110 0.890 39 H 0.072 0.928 40 H 0.124 0.876 41 H 0.121 0.879 42 H 0.053 0.947 43 H 0.120 0.880 44 H 0.147 0.853 45 H 0.140 0.860 46 H 0.226 0.774 47 H 0.088 0.912 48 H 0.111 0.889 49 H 0.043 0.957 50 H 0.114 0.886 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.582 1.719 23.590 25.161 hybrid contribution 0.678 -0.225 -2.117 2.235 sum -7.903 1.494 21.473 22.930 Atomic orbital electron populations 1.21758 0.94832 1.01929 1.02208 1.21542 0.96657 0.96782 1.01625 1.21658 0.93023 0.97281 1.03105 1.21353 0.96486 0.94015 1.01588 1.21376 0.89235 0.99666 1.02490 0.87980 1.21891 1.03499 1.00781 0.93456 1.21421 0.91606 0.82492 0.74574 1.90636 1.70947 1.32751 1.53041 1.48278 1.07197 1.07885 1.70964 1.22122 0.96666 0.83337 0.98234 1.22799 0.88450 1.01944 0.98088 1.62568 1.04953 1.13632 1.40482 1.22339 1.03823 0.98324 0.83963 1.22436 0.83020 0.86812 0.87520 1.90504 1.45445 1.26624 1.87588 1.42235 1.51495 1.23697 1.05389 1.18968 1.35427 1.07643 0.83729 0.93185 1.26188 0.98508 1.03246 0.93637 1.69816 1.47080 1.42015 0.98667 0.85341 0.78910 0.77055 0.80062 1.18321 1.20120 1.14940 1.22569 0.99637 0.90416 0.97319 1.21611 0.79851 1.00337 0.98116 0.92560 0.91791 0.92796 0.93287 0.91956 0.89676 0.91796 0.94304 0.92110 0.90373 0.88956 0.92779 0.87589 0.87892 0.94651 0.88031 0.85350 0.86023 0.77412 0.91152 0.88886 0.95743 0.88555 0.91119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.91 71.98 0.71 -1.24 16 2 C -0.13 -2.06 5.93 30.60 0.18 -1.88 16 3 C -0.11 -1.81 4.97 30.60 0.15 -1.65 16 4 C -0.10 -2.13 3.99 30.60 0.12 -2.00 16 5 C -0.11 -2.24 1.88 -11.54 -0.02 -2.27 16 6 H 0.10 2.02 7.08 -2.39 -0.02 2.00 16 7 C -0.14 -1.90 8.73 71.99 0.63 -1.28 16 8 C 0.51 15.15 7.00 87.66 0.61 15.76 16 9 O -0.59 -22.72 15.45 -3.03 -0.05 -22.77 16 10 N -0.61 -16.47 3.01 -817.92 -2.46 -18.93 16 11 C 0.12 2.43 5.15 86.35 0.44 2.87 16 12 C 0.02 0.43 5.14 86.39 0.44 0.87 16 13 N -0.49 -13.46 4.83 -899.84 -4.35 -17.81 16 14 C 0.05 1.31 5.83 85.56 0.50 1.81 16 15 C 0.41 17.60 7.20 87.66 0.63 18.23 16 16 O -0.62 -32.24 11.22 -3.07 -0.03 -32.27 16 17 N -0.59 -26.70 5.09 -306.98 -1.56 -28.26 16 18 C -0.33 -19.00 10.16 84.04 0.85 -18.15 16 19 H 0.05 3.50 7.39 -2.91 -0.02 3.47 16 20 C -0.02 -0.95 5.50 84.93 0.47 -0.48 16 21 N -0.94 -56.45 13.96 21.66 0.30 -56.15 16 22 Si 0.97 38.12 27.74 68.60 1.90 40.03 16 23 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 24 H -0.28 -10.87 7.11 99.48 0.71 -10.17 16 25 H -0.23 -7.32 6.52 99.48 0.65 -6.67 16 26 C 0.03 0.92 5.19 86.38 0.45 1.36 16 27 C 0.12 3.42 6.61 86.35 0.57 3.99 16 28 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.08 1.02 6.47 -2.38 -0.02 1.01 16 34 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.04 1.07 8.06 -2.39 -0.02 1.05 16 36 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.08 0.86 6.05 -2.39 -0.01 0.85 16 38 H 0.09 0.88 6.35 -2.39 -0.02 0.86 16 39 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.11 1.75 5.14 -2.39 -0.01 1.74 16 41 H 0.10 1.55 8.13 -2.39 -0.02 1.53 16 42 H 0.04 1.36 5.60 -2.39 -0.01 1.34 16 43 H 0.10 2.26 8.10 -2.38 -0.02 2.24 16 44 H 0.13 2.76 8.13 -2.39 -0.02 2.74 16 45 H 0.12 2.75 8.09 -2.39 -0.02 2.73 16 46 H 0.39 14.54 5.76 -92.71 -0.53 14.01 16 47 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 48 H 0.09 2.53 8.07 -2.39 -0.02 2.51 16 49 H 0.02 1.04 5.86 -2.39 -0.01 1.02 16 50 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 51 H 0.07 2.24 7.04 -2.38 -0.02 2.22 16 Total: -1.00 -81.77 388.12 0.83 -80.94 By element: Atomic # 1 Polarization: 38.94 SS G_CDS: 0.33 Total: 39.27 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: 6.75 Total: 15.95 kcal Atomic # 7 Polarization: -113.08 SS G_CDS: -8.07 Total: -121.15 kcal Atomic # 8 Polarization: -54.96 SS G_CDS: -0.08 Total: -55.04 kcal Atomic # 14 Polarization: 38.12 SS G_CDS: 1.90 Total: 40.03 kcal Total: -81.77 0.83 -80.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112820176.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.091 kcal (2) G-P(sol) polarization free energy of solvation -81.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.94 seconds