Wall clock time and date at job start Fri Apr 10 2020 18:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47553 * 2 1 4 4 C 1.52998 * 109.47127 * 59.99838 * 3 2 1 5 5 C 1.53001 * 109.46940 * 299.99706 * 3 2 1 6 6 C 1.53003 * 109.47321 * 179.97438 * 3 2 1 7 7 C 1.50698 * 109.47285 * 179.97438 * 6 3 2 8 8 O 1.21284 * 119.99641 * 0.02562 * 7 6 3 9 9 N 1.34766 * 120.00264 * 179.97438 * 7 6 3 10 10 C 1.47079 * 120.88484 * 180.02562 * 9 7 6 11 11 C 1.53244 * 108.52310 * 231.20917 * 10 9 7 12 12 N 1.46904 * 109.33584 * 306.16644 * 11 10 9 13 13 C 1.46898 * 110.99462 * 187.25026 * 12 11 10 14 14 C 1.50706 * 109.46984 * 170.00213 * 13 12 11 15 15 O 1.21295 * 119.99863 * 359.97438 * 14 13 12 16 16 N 1.34773 * 120.00080 * 180.02562 * 14 13 12 17 17 C 1.37105 * 119.99873 * 180.02562 * 16 14 13 18 18 H 1.08000 * 119.99509 * 359.71860 * 17 16 14 19 19 C 1.38950 * 120.00048 * 179.72298 * 17 16 14 20 20 N 1.31413 * 119.99930 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99918 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47151 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47086 * 119.99941 * 21 19 17 24 24 H 1.48500 * 109.46879 * 239.99997 * 21 19 17 25 25 C 1.46901 * 111.26921 * 63.10970 * 12 11 10 26 26 C 1.47077 * 120.88263 * 0.02775 * 9 7 6 27 27 H 1.09002 * 109.47239 * 300.00423 * 1 2 3 28 28 H 1.09001 * 109.47185 * 59.99829 * 1 2 3 29 29 H 1.08998 * 109.47677 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47239 * 239.99577 * 2 1 3 31 31 H 1.09001 * 109.47185 * 120.00170 * 2 1 3 32 32 H 1.09001 * 109.47000 * 180.02562 * 4 3 2 33 33 H 1.09005 * 109.46783 * 299.99931 * 4 3 2 34 34 H 1.08994 * 109.47149 * 60.00172 * 4 3 2 35 35 H 1.08998 * 109.47523 * 300.00075 * 5 3 2 36 36 H 1.09010 * 109.46888 * 59.99888 * 5 3 2 37 37 H 1.09001 * 109.47424 * 179.97438 * 5 3 2 38 38 H 1.08998 * 109.46926 * 60.00057 * 6 3 2 39 39 H 1.08994 * 109.47093 * 299.99912 * 6 3 2 40 40 H 1.08994 * 109.63122 * 111.49886 * 10 9 7 41 41 H 1.09005 * 109.78855 * 351.00842 * 10 9 7 42 42 H 1.09001 * 109.49544 * 186.21029 * 11 10 9 43 43 H 1.08999 * 109.49090 * 66.12553 * 11 10 9 44 44 H 1.09004 * 109.47320 * 50.00617 * 13 12 11 45 45 H 1.09001 * 109.47291 * 289.99914 * 13 12 11 46 46 H 0.96996 * 119.99858 * 359.72084 * 16 14 13 47 47 H 0.96999 * 119.99993 * 179.97438 * 20 19 17 48 48 H 1.09001 * 109.49910 * 56.84429 * 25 12 11 49 49 H 1.08996 * 109.49354 * 176.93475 * 25 12 11 50 50 H 1.09003 * 109.63416 * 248.50478 * 26 9 7 51 51 H 1.09005 * 109.63033 * 9.08200 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.5301 2.1637 1.2492 5 6 1.5301 2.1637 -1.2493 6 6 3.5701 1.4424 0.0006 7 6 4.0725 2.8631 0.0000 8 8 3.2844 3.7850 -0.0004 9 7 5.3975 3.1093 0.0009 10 6 5.9091 4.4883 0.0009 11 6 6.9328 4.6277 -1.1309 12 7 7.9579 3.5848 -0.9908 13 6 9.0498 3.7875 -1.9524 14 6 10.1892 2.8581 -1.6219 15 8 10.1005 2.1017 -0.6778 16 7 11.3071 2.8682 -2.3746 17 6 12.3434 2.0223 -2.0742 18 1 12.2657 1.3512 -1.2316 19 6 13.4936 2.0286 -2.8537 20 7 13.5879 2.8449 -3.8792 21 14 14.9059 0.8766 -2.4440 22 1 14.5532 0.0660 -1.2507 23 1 15.1607 -0.0239 -3.5971 24 1 16.1267 1.6723 -2.1581 25 6 7.3759 2.2433 -1.1303 26 6 6.3703 2.0063 0.0020 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.8931 3.1915 1.2489 33 1 0.4400 2.1638 1.2491 34 1 1.8934 1.6499 2.1392 35 1 1.8934 1.6498 -2.1393 36 1 0.4400 2.1637 -1.2493 37 1 1.8931 3.1914 -1.2491 38 1 3.9337 0.9284 -0.8891 39 1 3.9330 0.9287 0.8908 40 1 6.3885 4.7010 0.9564 41 1 5.0878 5.1866 -0.1602 42 1 7.4031 5.6095 -1.0771 43 1 6.4301 4.5168 -2.0917 44 1 9.3954 4.8198 -1.8975 45 1 8.6903 3.5776 -2.9598 46 1 11.3766 3.4707 -3.1316 47 1 14.3910 2.8496 -4.4232 48 1 6.8669 2.1656 -2.0911 49 1 8.1674 1.4959 -1.0761 50 1 6.8940 1.9807 0.9576 51 1 5.8523 1.0610 -0.1602 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112884993.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:01 Heat of formation + Delta-G solvation = -70.455891 kcal Electronic energy + Delta-G solvation = -28596.036856 eV Core-core repulsion = 24723.275682 eV Total energy + Delta-G solvation = -3872.761174 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.60756 -38.98615 -37.82386 -36.79912 -34.53397 -33.80848 -31.63177 -31.29588 -30.68306 -29.16556 -27.79610 -27.34535 -25.65972 -24.35530 -23.81872 -23.39369 -21.18731 -19.34374 -19.10140 -18.49694 -17.91538 -17.23593 -16.19149 -15.77836 -15.69898 -15.20698 -15.08046 -14.99041 -14.78086 -14.46443 -14.22431 -14.12788 -13.89975 -13.64242 -13.56497 -13.06000 -12.97695 -12.49200 -12.39629 -12.11874 -11.99273 -11.95802 -11.61494 -11.55829 -11.41401 -11.30917 -11.23161 -11.16894 -11.15399 -10.89248 -10.85591 -10.66439 -10.65205 -10.37348 -10.26286 -9.53485 -9.45338 -8.83402 -8.39021 -8.02405 -7.92483 -6.45635 -3.86594 2.57186 2.91903 3.13334 3.24393 3.31074 3.84472 3.91728 4.19702 4.35350 4.47335 4.62510 4.80217 4.87381 5.00088 5.01383 5.07484 5.18983 5.20935 5.23876 5.26827 5.34579 5.36971 5.39803 5.46865 5.48895 5.52098 5.70604 5.71566 5.74405 5.77763 5.81006 5.83746 5.85047 5.87401 5.96550 5.98521 6.10412 6.12953 6.17574 6.22033 6.38129 6.38924 6.55251 7.11937 7.27972 7.41793 7.51655 8.02309 8.15133 8.56997 9.13946 9.50049 10.01059 10.72038 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.024536 B = 0.002237 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.904002 B =12514.800152 C =13130.547687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.046 4.046 4 C -0.154 4.154 5 C -0.154 4.154 6 C -0.133 4.133 7 C 0.517 3.483 8 O -0.540 6.540 9 N -0.613 5.613 10 C 0.118 3.882 11 C 0.041 3.959 12 N -0.515 5.515 13 C 0.046 3.954 14 C 0.443 3.557 15 O -0.579 6.579 16 N -0.563 5.563 17 C -0.298 4.298 18 H 0.104 0.896 19 C 0.022 3.978 20 N -0.901 5.901 21 Si 0.929 3.071 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.281 1.281 25 C 0.039 3.961 26 C 0.114 3.886 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.052 0.948 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.052 0.948 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.074 0.926 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.034 0.966 44 H 0.090 0.910 45 H 0.047 0.953 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.026 0.974 49 H 0.116 0.884 50 H 0.082 0.918 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.421 -0.964 4.601 21.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.152 4.152 3 C -0.046 4.046 4 C -0.211 4.211 5 C -0.211 4.211 6 C -0.173 4.173 7 C 0.306 3.694 8 O -0.419 6.419 9 N -0.346 5.346 10 C -0.004 4.004 11 C -0.088 4.088 12 N -0.239 5.239 13 C -0.085 4.085 14 C 0.229 3.771 15 O -0.463 6.463 16 N -0.200 5.200 17 C -0.428 4.428 18 H 0.122 0.878 19 C -0.180 4.180 20 N -0.542 5.542 21 Si 0.757 3.243 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.207 1.207 25 C -0.090 4.090 26 C -0.009 4.009 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.101 0.899 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.092 0.908 41 H 0.111 0.889 42 H 0.104 0.896 43 H 0.052 0.948 44 H 0.108 0.892 45 H 0.065 0.935 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.045 0.955 49 H 0.134 0.866 50 H 0.100 0.900 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -21.531 -0.929 5.576 22.260 hybrid contribution 0.740 -0.294 -1.277 1.504 sum -20.791 -1.223 4.299 21.266 Atomic orbital electron populations 1.21867 0.95820 1.01268 1.02191 1.21593 0.96185 0.95662 1.01808 1.20278 0.92132 0.95123 0.97086 1.22139 1.00703 1.02630 0.95593 1.22143 1.00714 1.02626 0.95615 1.21813 0.97085 0.94237 1.04172 1.20648 0.81465 0.91752 0.75505 1.90543 1.54114 1.46790 1.50417 1.48316 1.05585 1.07852 1.72872 1.21659 0.96533 0.83128 0.99106 1.22508 0.92817 0.96357 0.97142 1.61506 1.09019 1.02035 1.51366 1.21854 0.92220 1.00770 0.93632 1.19712 0.84288 0.87268 0.85872 1.90474 1.81379 1.43556 1.30908 1.41886 1.13810 1.36295 1.27970 1.19742 0.93226 1.16468 1.13349 0.87812 1.25277 0.99056 0.97984 0.95688 1.69619 1.29428 1.37598 1.17573 0.85801 0.80383 0.79654 0.78508 1.19202 1.20772 1.20745 1.22653 0.97932 0.92820 0.95573 1.21922 0.89591 0.88789 1.00589 0.92417 0.92412 0.93092 0.92057 0.92051 0.89853 0.92890 0.93680 0.93703 0.92872 0.89867 0.89030 0.88960 0.90754 0.88896 0.89580 0.94784 0.89191 0.93471 0.77485 0.91893 0.95537 0.86634 0.90016 0.89709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.21 37.16 0.34 -0.76 16 2 C -0.11 -0.88 4.99 -26.74 -0.13 -1.01 16 3 C -0.05 -0.42 0.54 -154.51 -0.08 -0.50 16 4 C -0.15 -1.50 7.82 37.16 0.29 -1.21 16 5 C -0.15 -1.53 7.82 37.16 0.29 -1.24 16 6 C -0.13 -1.24 3.13 -27.88 -0.09 -1.33 16 7 C 0.52 6.22 7.12 -10.99 -0.08 6.14 16 8 O -0.54 -7.64 10.80 5.55 0.06 -7.58 16 9 N -0.61 -7.48 3.01 -172.44 -0.52 -8.00 16 10 C 0.12 1.44 6.59 -3.60 -0.02 1.42 16 11 C 0.04 0.52 5.62 -3.70 -0.02 0.50 16 12 N -0.51 -8.09 4.37 -235.73 -1.03 -9.12 16 13 C 0.05 0.79 5.45 -4.97 -0.03 0.76 16 14 C 0.44 9.97 7.44 -10.98 -0.08 9.89 16 15 O -0.58 -14.69 13.91 5.54 0.08 -14.61 16 16 N -0.56 -13.81 5.29 -10.96 -0.06 -13.87 16 17 C -0.30 -8.08 9.68 -14.93 -0.14 -8.22 16 18 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 19 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 20 N -0.90 -24.09 13.05 55.50 0.72 -23.36 16 21 Si 0.93 20.62 29.55 -169.99 -5.02 15.60 16 22 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 25 C 0.04 0.57 5.26 -3.68 -0.02 0.56 16 26 C 0.11 1.38 6.50 -3.58 -0.02 1.35 16 27 H 0.06 0.41 6.43 -51.93 -0.33 0.08 16 28 H 0.06 0.42 6.43 -51.93 -0.33 0.08 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 1.00 5.51 -51.93 -0.29 0.72 16 33 H 0.05 0.47 6.43 -51.93 -0.33 0.14 16 34 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.05 0.48 6.43 -51.92 -0.33 0.15 16 37 H 0.08 1.02 5.51 -51.93 -0.29 0.73 16 38 H 0.09 0.78 7.66 -51.93 -0.40 0.38 16 39 H 0.09 0.75 8.00 -51.93 -0.42 0.34 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.09 1.12 7.07 -51.93 -0.37 0.75 16 42 H 0.09 0.97 7.99 -51.93 -0.41 0.56 16 43 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.09 1.39 7.97 -51.93 -0.41 0.98 16 45 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 46 H 0.39 9.25 7.90 -40.82 -0.32 8.92 16 47 H 0.27 6.85 8.31 -40.82 -0.34 6.52 16 48 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.12 2.07 5.77 -51.93 -0.30 1.77 16 50 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 51 H 0.08 0.81 6.02 -51.93 -0.31 0.50 16 LS Contribution 385.97 15.07 5.82 5.82 Total: -1.00 -30.40 385.97 -8.44 -38.84 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: -8.59 Total: 9.46 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: 0.10 Total: 6.83 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: -0.88 Total: -54.35 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: 0.14 Total: -22.19 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.40 -8.44 -38.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112884993.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.620 kcal (2) G-P(sol) polarization free energy of solvation -30.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds