Wall clock time and date at job start Fri Apr 10 2020 18:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47553 * 2 1 4 4 C 1.52998 * 109.47127 * 59.99838 * 3 2 1 5 5 C 1.53001 * 109.46940 * 299.99706 * 3 2 1 6 6 C 1.53003 * 109.47321 * 179.97438 * 3 2 1 7 7 C 1.50698 * 109.47285 * 179.97438 * 6 3 2 8 8 O 1.21284 * 119.99641 * 0.02562 * 7 6 3 9 9 N 1.34766 * 120.00264 * 179.97438 * 7 6 3 10 10 C 1.47079 * 120.88484 * 180.02562 * 9 7 6 11 11 C 1.53244 * 108.52310 * 231.20917 * 10 9 7 12 12 N 1.46904 * 109.33584 * 306.16644 * 11 10 9 13 13 C 1.46898 * 110.99462 * 187.25026 * 12 11 10 14 14 C 1.50706 * 109.46984 * 170.00213 * 13 12 11 15 15 O 1.21295 * 119.99863 * 359.97438 * 14 13 12 16 16 N 1.34773 * 120.00080 * 180.02562 * 14 13 12 17 17 C 1.37105 * 119.99873 * 180.02562 * 16 14 13 18 18 H 1.08000 * 119.99509 * 359.71860 * 17 16 14 19 19 C 1.38950 * 120.00048 * 179.72298 * 17 16 14 20 20 N 1.31413 * 119.99930 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99918 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47151 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47086 * 119.99941 * 21 19 17 24 24 H 1.48500 * 109.46879 * 239.99997 * 21 19 17 25 25 C 1.46901 * 111.26921 * 63.10970 * 12 11 10 26 26 C 1.47077 * 120.88263 * 0.02775 * 9 7 6 27 27 H 1.09002 * 109.47239 * 300.00423 * 1 2 3 28 28 H 1.09001 * 109.47185 * 59.99829 * 1 2 3 29 29 H 1.08998 * 109.47677 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47239 * 239.99577 * 2 1 3 31 31 H 1.09001 * 109.47185 * 120.00170 * 2 1 3 32 32 H 1.09001 * 109.47000 * 180.02562 * 4 3 2 33 33 H 1.09005 * 109.46783 * 299.99931 * 4 3 2 34 34 H 1.08994 * 109.47149 * 60.00172 * 4 3 2 35 35 H 1.08998 * 109.47523 * 300.00075 * 5 3 2 36 36 H 1.09010 * 109.46888 * 59.99888 * 5 3 2 37 37 H 1.09001 * 109.47424 * 179.97438 * 5 3 2 38 38 H 1.08998 * 109.46926 * 60.00057 * 6 3 2 39 39 H 1.08994 * 109.47093 * 299.99912 * 6 3 2 40 40 H 1.08994 * 109.63122 * 111.49886 * 10 9 7 41 41 H 1.09005 * 109.78855 * 351.00842 * 10 9 7 42 42 H 1.09001 * 109.49544 * 186.21029 * 11 10 9 43 43 H 1.08999 * 109.49090 * 66.12553 * 11 10 9 44 44 H 1.09004 * 109.47320 * 50.00617 * 13 12 11 45 45 H 1.09001 * 109.47291 * 289.99914 * 13 12 11 46 46 H 0.96996 * 119.99858 * 359.72084 * 16 14 13 47 47 H 0.96999 * 119.99993 * 179.97438 * 20 19 17 48 48 H 1.09001 * 109.49910 * 56.84429 * 25 12 11 49 49 H 1.08996 * 109.49354 * 176.93475 * 25 12 11 50 50 H 1.09003 * 109.63416 * 248.50478 * 26 9 7 51 51 H 1.09005 * 109.63033 * 9.08200 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.5301 2.1637 1.2492 5 6 1.5301 2.1637 -1.2493 6 6 3.5701 1.4424 0.0006 7 6 4.0725 2.8631 0.0000 8 8 3.2844 3.7850 -0.0004 9 7 5.3975 3.1093 0.0009 10 6 5.9091 4.4883 0.0009 11 6 6.9328 4.6277 -1.1309 12 7 7.9579 3.5848 -0.9908 13 6 9.0498 3.7875 -1.9524 14 6 10.1892 2.8581 -1.6219 15 8 10.1005 2.1017 -0.6778 16 7 11.3071 2.8682 -2.3746 17 6 12.3434 2.0223 -2.0742 18 1 12.2657 1.3512 -1.2316 19 6 13.4936 2.0286 -2.8537 20 7 13.5879 2.8449 -3.8792 21 14 14.9059 0.8766 -2.4440 22 1 14.5532 0.0660 -1.2507 23 1 15.1607 -0.0239 -3.5971 24 1 16.1267 1.6723 -2.1581 25 6 7.3759 2.2433 -1.1303 26 6 6.3703 2.0063 0.0020 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.8931 3.1915 1.2489 33 1 0.4400 2.1638 1.2491 34 1 1.8934 1.6499 2.1392 35 1 1.8934 1.6498 -2.1393 36 1 0.4400 2.1637 -1.2493 37 1 1.8931 3.1914 -1.2491 38 1 3.9337 0.9284 -0.8891 39 1 3.9330 0.9287 0.8908 40 1 6.3885 4.7010 0.9564 41 1 5.0878 5.1866 -0.1602 42 1 7.4031 5.6095 -1.0771 43 1 6.4301 4.5168 -2.0917 44 1 9.3954 4.8198 -1.8975 45 1 8.6903 3.5776 -2.9598 46 1 11.3766 3.4707 -3.1316 47 1 14.3910 2.8496 -4.4232 48 1 6.8669 2.1656 -2.0911 49 1 8.1674 1.4959 -1.0761 50 1 6.8940 1.9807 0.9576 51 1 5.8523 1.0610 -0.1602 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112884993.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:00 Heat of formation + Delta-G solvation = -90.108585 kcal Electronic energy + Delta-G solvation = -28596.889061 eV Core-core repulsion = 24723.275682 eV Total energy + Delta-G solvation = -3873.613379 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.56109 -40.41254 -39.09212 -37.78226 -36.03502 -35.38915 -33.25398 -32.54732 -31.47962 -30.33854 -28.77600 -28.11856 -27.19148 -25.53094 -24.97846 -24.34478 -22.22322 -21.05540 -20.07220 -19.83380 -19.30770 -18.19163 -17.77763 -16.84598 -16.63667 -16.60747 -16.34137 -16.19925 -15.74580 -15.66001 -15.39390 -15.35199 -15.20526 -14.99837 -14.57641 -14.11384 -13.91165 -13.80917 -13.51875 -13.23583 -13.04628 -12.97836 -12.85633 -12.72090 -12.65885 -12.39477 -12.39148 -12.21189 -12.16932 -12.14640 -12.07648 -11.90854 -11.65730 -11.43645 -11.35789 -11.30950 -10.39005 -10.30665 -9.98554 -9.69367 -9.20874 -8.44913 -5.93042 1.37680 1.43305 1.57008 1.65096 1.97434 2.07300 2.29408 2.73540 3.22230 3.37633 3.51133 3.75816 3.90820 3.93833 4.00013 4.11339 4.19034 4.23725 4.29750 4.41313 4.43905 4.48679 4.49781 4.54880 4.60723 4.66070 4.68396 4.73975 4.76524 4.85540 4.88479 4.94409 4.96311 5.06427 5.14107 5.14825 5.20091 5.25795 5.28782 5.42969 5.43765 5.48343 5.61686 5.72359 5.82790 6.05363 6.14466 6.46229 6.62247 7.15077 7.22116 7.58861 8.13776 8.72685 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.024536 B = 0.002237 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.904002 B =12514.800152 C =13130.547687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.111 4.111 3 C -0.045 4.045 4 C -0.150 4.150 5 C -0.150 4.150 6 C -0.132 4.132 7 C 0.514 3.486 8 O -0.562 6.562 9 N -0.615 5.615 10 C 0.120 3.880 11 C 0.047 3.953 12 N -0.531 5.531 13 C 0.058 3.942 14 C 0.444 3.556 15 O -0.610 6.610 16 N -0.576 5.576 17 C -0.327 4.327 18 H 0.081 0.919 19 C -0.016 4.016 20 N -0.922 5.922 21 Si 0.992 3.008 22 H -0.272 1.272 23 H -0.272 1.272 24 H -0.273 1.273 25 C 0.041 3.959 26 C 0.123 3.877 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.051 0.949 35 H 0.048 0.952 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.072 0.928 41 H 0.094 0.906 42 H 0.102 0.898 43 H 0.037 0.963 44 H 0.111 0.889 45 H 0.064 0.936 46 H 0.395 0.605 47 H 0.276 0.724 48 H 0.034 0.966 49 H 0.082 0.918 50 H 0.072 0.928 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.231 -1.623 4.507 22.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.149 4.149 3 C -0.045 4.045 4 C -0.207 4.207 5 C -0.207 4.207 6 C -0.171 4.171 7 C 0.304 3.696 8 O -0.442 6.442 9 N -0.348 5.348 10 C -0.003 4.003 11 C -0.081 4.081 12 N -0.256 5.256 13 C -0.073 4.073 14 C 0.231 3.769 15 O -0.496 6.496 16 N -0.213 5.213 17 C -0.457 4.457 18 H 0.099 0.901 19 C -0.215 4.215 20 N -0.563 5.563 21 Si 0.816 3.184 22 H -0.196 1.196 23 H -0.198 1.198 24 H -0.199 1.199 25 C -0.088 4.088 26 C 0.000 4.000 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.123 0.877 39 H 0.127 0.873 40 H 0.091 0.909 41 H 0.113 0.887 42 H 0.120 0.880 43 H 0.055 0.945 44 H 0.129 0.871 45 H 0.082 0.918 46 H 0.229 0.771 47 H 0.086 0.914 48 H 0.052 0.948 49 H 0.100 0.900 50 H 0.090 0.910 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -22.360 -1.572 5.474 23.074 hybrid contribution 0.903 -0.049 -1.215 1.515 sum -21.457 -1.622 4.259 21.935 Atomic orbital electron populations 1.21868 0.95519 1.01812 1.01983 1.21565 0.96432 0.94383 1.02491 1.20284 0.92026 0.95998 0.96201 1.22072 1.01023 1.01258 0.96312 1.22079 1.01042 1.01255 0.96342 1.21888 0.97198 0.92509 1.05550 1.21144 0.81020 0.92703 0.74704 1.90554 1.54548 1.47844 1.51293 1.48377 1.05791 1.07770 1.72896 1.21627 0.96383 0.83469 0.98838 1.22533 0.92134 0.96060 0.97416 1.61490 1.09779 1.03170 1.51193 1.21721 0.90747 1.00102 0.94701 1.20678 0.84728 0.86939 0.84556 1.90456 1.82111 1.44886 1.32110 1.41957 1.14193 1.36506 1.28650 1.19687 0.94903 1.17524 1.13555 0.90083 1.26034 1.00864 0.99247 0.95367 1.69681 1.30227 1.38412 1.18016 0.84881 0.77434 0.77845 0.78253 1.19617 1.19757 1.19885 1.22549 0.97456 0.91681 0.97081 1.21844 0.89194 0.89996 0.98950 0.92576 0.92696 0.92192 0.91464 0.91262 0.92327 0.92382 0.93023 0.93264 0.92359 0.92328 0.87671 0.87341 0.90946 0.88728 0.87973 0.94458 0.87122 0.91796 0.77133 0.91427 0.94832 0.89952 0.90983 0.86881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.21 71.98 0.66 -1.22 16 2 C -0.11 -1.42 4.99 30.59 0.15 -1.27 16 3 C -0.04 -0.73 0.54 -52.18 -0.03 -0.76 16 4 C -0.15 -2.74 7.82 71.98 0.56 -2.18 16 5 C -0.15 -2.81 7.82 71.98 0.56 -2.25 16 6 C -0.13 -2.17 3.13 29.85 0.09 -2.08 16 7 C 0.51 11.69 7.12 87.66 0.62 12.31 16 8 O -0.56 -15.63 10.80 -3.04 -0.03 -15.67 16 9 N -0.62 -14.17 3.01 -817.87 -2.46 -16.63 16 10 C 0.12 2.77 6.59 86.35 0.57 3.34 16 11 C 0.05 1.10 5.62 86.38 0.49 1.59 16 12 N -0.53 -16.12 4.37 -899.70 -3.93 -20.05 16 13 C 0.06 1.92 5.45 85.56 0.47 2.39 16 14 C 0.44 20.12 7.44 87.66 0.65 20.78 16 15 O -0.61 -31.62 13.91 -3.08 -0.04 -31.67 16 16 N -0.58 -28.64 5.29 -306.97 -1.62 -30.26 16 17 C -0.33 -18.07 9.68 84.04 0.81 -17.26 16 18 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 19 C -0.02 -0.82 5.50 84.93 0.47 -0.36 16 20 N -0.92 -49.13 13.05 21.66 0.28 -48.85 16 21 Si 0.99 42.21 29.55 68.60 2.03 44.24 16 22 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 23 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 24 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 25 C 0.04 1.19 5.26 86.40 0.45 1.64 16 26 C 0.12 2.81 6.50 86.36 0.56 3.37 16 27 H 0.06 0.69 6.43 -2.39 -0.02 0.68 16 28 H 0.05 0.69 6.43 -2.39 -0.02 0.68 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.06 1.39 5.51 -2.39 -0.01 1.38 16 33 H 0.06 0.97 6.43 -2.38 -0.02 0.96 16 34 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.06 1.00 6.43 -2.38 -0.02 0.98 16 37 H 0.06 1.41 5.51 -2.39 -0.01 1.40 16 38 H 0.11 1.48 7.66 -2.39 -0.02 1.46 16 39 H 0.11 1.46 8.00 -2.39 -0.02 1.44 16 40 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.09 2.18 7.07 -2.38 -0.02 2.17 16 42 H 0.10 2.08 7.99 -2.39 -0.02 2.06 16 43 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.11 3.21 7.97 -2.39 -0.02 3.19 16 45 H 0.06 1.92 8.12 -2.39 -0.02 1.90 16 46 H 0.40 18.80 7.90 -92.71 -0.73 18.07 16 47 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 48 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.08 2.98 5.77 -2.39 -0.01 2.97 16 50 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 51 H 0.11 1.91 6.02 -2.38 -0.01 1.89 16 Total: -1.00 -66.13 385.97 1.51 -64.62 By element: Atomic # 1 Polarization: 36.02 SS G_CDS: 0.19 Total: 36.21 kcal Atomic # 6 Polarization: 10.96 SS G_CDS: 7.10 Total: 18.06 kcal Atomic # 7 Polarization: -108.06 SS G_CDS: -7.73 Total: -115.79 kcal Atomic # 8 Polarization: -47.26 SS G_CDS: -0.08 Total: -47.33 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -66.13 1.51 -64.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112884993.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.493 kcal (2) G-P(sol) polarization free energy of solvation -66.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds