Wall clock time and date at job start Fri Apr 10 2020 18:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47174 * 2 1 4 4 C 1.52996 * 109.47265 * 120.00419 * 2 1 3 5 5 C 1.53006 * 109.46980 * 299.99492 * 4 2 1 6 6 C 1.52996 * 109.47265 * 179.97438 * 4 2 1 7 7 C 1.50695 * 109.47273 * 59.99558 * 4 2 1 8 8 O 1.21280 * 119.99991 * 5.88548 * 7 4 2 9 9 N 1.34777 * 120.00041 * 185.87737 * 7 4 2 10 10 C 1.47083 * 120.88057 * 174.36820 * 9 7 4 11 11 C 1.53701 * 108.27337 * 128.76159 * 10 9 7 12 12 N 1.46893 * 109.25634 * 54.08422 * 11 10 9 13 13 C 1.46904 * 110.99847 * 172.60933 * 12 11 10 14 14 C 1.50705 * 109.46916 * 294.30082 * 13 12 11 15 15 O 1.21295 * 120.00077 * 359.97438 * 14 13 12 16 16 N 1.34770 * 120.00018 * 179.97438 * 14 13 12 17 17 C 1.37099 * 120.00335 * 179.97438 * 16 14 13 18 18 H 1.08003 * 119.99587 * 359.97438 * 17 16 14 19 19 C 1.38956 * 120.00519 * 180.02562 * 17 16 14 20 20 N 1.31406 * 119.99447 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99892 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47102 * 59.99928 * 21 19 17 23 23 H 1.48503 * 109.46426 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47138 * 299.99330 * 21 19 17 25 25 C 1.46894 * 111.27257 * 296.75139 * 12 11 10 26 26 C 1.47080 * 120.88518 * 354.65426 * 9 7 4 27 27 H 1.09002 * 109.47252 * 300.00049 * 1 2 3 28 28 H 1.09002 * 109.47019 * 59.99814 * 1 2 3 29 29 H 1.08996 * 109.47463 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47252 * 239.99951 * 2 1 3 31 31 H 1.09005 * 109.47320 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47299 * 300.00015 * 3 2 1 33 33 H 1.08995 * 109.46971 * 60.00226 * 3 2 1 34 34 H 1.08998 * 109.47447 * 186.30816 * 5 4 2 35 35 H 1.08997 * 109.47266 * 306.31387 * 5 4 2 36 36 H 1.09006 * 109.46489 * 66.31137 * 5 4 2 37 37 H 1.09005 * 109.47368 * 316.68896 * 6 4 2 38 38 H 1.09005 * 109.47483 * 76.69029 * 6 4 2 39 39 H 1.08997 * 109.47402 * 196.69043 * 6 4 2 40 40 H 1.09004 * 109.62950 * 248.52906 * 10 9 7 41 41 H 1.08993 * 109.63171 * 9.11042 * 10 9 7 42 42 H 1.08993 * 109.64546 * 294.07587 * 11 10 9 43 43 H 1.09004 * 109.41735 * 173.95195 * 11 10 9 44 44 H 1.09002 * 109.47210 * 54.29706 * 13 12 11 45 45 H 1.08994 * 109.47371 * 174.29950 * 13 12 11 46 46 H 0.97003 * 120.00097 * 359.97438 * 16 14 13 47 47 H 0.97001 * 119.99900 * 180.02562 * 20 19 17 48 48 H 1.09005 * 109.49584 * 303.15544 * 25 12 11 49 49 H 1.08997 * 109.50046 * 183.06595 * 25 12 11 50 50 H 1.09004 * 109.62669 * 350.89169 * 26 9 7 51 51 H 1.08997 * 109.63042 * 111.46580 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.5301 0.0000 2.4985 6 6 3.5699 -0.7219 1.2488 7 6 1.5376 -2.1421 1.2491 8 8 0.9308 -2.5707 0.2905 9 7 1.7628 -2.9365 2.3144 10 6 1.1775 -4.2838 2.3884 11 6 2.3018 -5.2804 2.7128 12 7 3.0035 -4.8411 3.9262 13 6 3.9699 -5.8540 4.3713 14 6 3.2331 -7.0954 4.8039 15 8 2.0220 -7.1325 4.7474 16 7 3.9197 -8.1643 5.2535 17 6 3.2495 -9.2935 5.6476 18 1 2.1711 -9.3263 5.5980 19 6 3.9574 -10.3955 6.1116 20 7 5.2694 -10.3554 6.1724 21 14 3.0440 -11.9342 6.6478 22 1 2.2591 -12.4672 5.5055 23 1 4.0210 -12.9583 7.0972 24 1 2.1262 -11.6005 7.7664 25 6 3.6587 -3.5423 3.7223 26 6 2.5951 -2.4768 3.4365 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.9826 -0.4445 3.3849 35 1 1.7982 1.0550 2.4438 36 1 0.4459 -0.0968 2.5567 37 1 3.9330 -0.9587 0.2487 38 1 3.9338 0.2624 1.5438 39 1 3.9332 -1.4697 1.9537 40 1 0.4214 -4.3120 3.1730 41 1 0.7249 -4.5396 1.4305 42 1 3.0050 -5.3229 1.8811 43 1 1.8733 -6.2690 2.8780 44 1 4.6437 -6.0989 3.5503 45 1 4.5461 -5.4627 5.2097 46 1 4.8883 -8.1348 5.2984 47 1 5.7637 -11.1247 6.4960 48 1 4.3431 -3.6089 2.8765 49 1 4.2142 -3.2701 4.6197 50 1 3.0800 -1.5371 3.1718 51 1 1.9726 -2.3345 4.3199 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112888188.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:04 Heat of formation + Delta-G solvation = -74.724237 kcal Electronic energy + Delta-G solvation = -29254.719724 eV Core-core repulsion = 25381.773460 eV Total energy + Delta-G solvation = -3872.946264 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.01255 -40.43283 -38.92428 -37.74679 -36.14335 -35.51030 -33.31569 -32.98212 -31.48070 -30.11570 -28.73526 -27.71087 -27.41662 -25.80061 -24.81995 -24.38004 -22.61928 -21.11805 -20.68750 -19.88640 -19.37725 -17.83113 -17.73093 -17.18464 -16.60238 -16.54586 -16.45751 -16.09361 -15.84791 -15.59985 -15.38927 -15.33124 -15.07471 -14.93531 -14.53384 -14.07554 -13.93291 -13.69916 -13.47555 -13.43191 -13.11522 -13.02765 -12.96327 -12.71871 -12.61861 -12.52497 -12.42932 -12.26640 -12.17237 -12.10101 -12.08451 -12.04507 -11.90057 -11.45129 -11.39336 -11.20503 -10.50682 -10.26687 -9.99910 -9.73467 -9.22127 -8.45994 -5.94160 1.39462 1.41404 1.51933 1.61259 1.93442 2.06730 2.28508 2.72863 3.20966 3.35199 3.39003 3.66753 3.85172 3.89474 3.96718 4.08863 4.14818 4.18754 4.28823 4.36293 4.41737 4.43781 4.49299 4.54339 4.56335 4.58766 4.67443 4.71406 4.81190 4.83692 4.87098 4.88267 4.91292 4.99666 5.03345 5.09008 5.16405 5.21365 5.28262 5.34081 5.41424 5.43959 5.55684 5.60591 5.81011 6.02485 6.15393 6.45801 6.61595 7.13986 7.16115 7.57809 8.13700 8.71137 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.035389 B = 0.002344 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.026125 B =11940.820737 C =12326.942484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.069 4.069 3 C -0.144 4.144 4 C -0.071 4.071 5 C -0.158 4.158 6 C -0.154 4.154 7 C 0.516 3.484 8 O -0.582 6.582 9 N -0.609 5.609 10 C 0.128 3.872 11 C 0.051 3.949 12 N -0.528 5.528 13 C 0.059 3.941 14 C 0.440 3.560 15 O -0.614 6.614 16 N -0.574 5.574 17 C -0.331 4.331 18 H 0.078 0.922 19 C -0.013 4.013 20 N -0.920 5.920 21 Si 0.991 3.009 22 H -0.274 1.274 23 H -0.271 1.271 24 H -0.272 1.272 25 C 0.035 3.965 26 C 0.093 3.907 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.043 0.957 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.050 0.950 37 H 0.054 0.946 38 H 0.101 0.899 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.026 0.974 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.120 0.880 46 H 0.396 0.604 47 H 0.277 0.723 48 H 0.043 0.957 49 H 0.116 0.884 50 H 0.141 0.859 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.109 25.457 -7.111 26.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.088 4.088 3 C -0.201 4.201 4 C -0.074 4.074 5 C -0.214 4.214 6 C -0.211 4.211 7 C 0.307 3.693 8 O -0.462 6.462 9 N -0.341 5.341 10 C 0.004 3.996 11 C -0.078 4.078 12 N -0.253 5.253 13 C -0.072 4.072 14 C 0.228 3.772 15 O -0.500 6.500 16 N -0.212 5.212 17 C -0.461 4.461 18 H 0.096 0.904 19 C -0.213 4.213 20 N -0.561 5.561 21 Si 0.815 3.185 22 H -0.199 1.199 23 H -0.195 1.195 24 H -0.197 1.197 25 C -0.093 4.093 26 C -0.028 4.028 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.115 0.885 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.120 0.880 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.044 0.956 43 H 0.092 0.908 44 H 0.081 0.919 45 H 0.138 0.862 46 H 0.230 0.770 47 H 0.087 0.913 48 H 0.061 0.939 49 H 0.134 0.866 50 H 0.159 0.841 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.211 25.124 -7.213 26.140 hybrid contribution 0.403 -1.750 -0.490 1.861 sum 0.191 23.375 -7.703 24.612 Atomic orbital electron populations 1.22008 0.95820 1.01655 1.01786 1.20892 0.95661 0.96892 0.95393 1.21929 1.01809 0.93639 1.02689 1.20830 0.98195 0.89347 0.99020 1.22367 1.01434 1.02265 0.95370 1.22232 0.91054 1.04880 1.02948 1.21394 0.78381 0.88695 0.80864 1.90617 1.43809 1.76440 1.35361 1.48265 1.50544 1.15185 1.20136 1.21522 0.95136 0.81393 1.01508 1.22459 0.95978 0.99497 0.89863 1.61485 1.28638 1.02737 1.32486 1.21741 0.93272 0.90505 1.01686 1.20793 0.88198 0.85603 0.82628 1.90469 1.15781 1.83744 1.59991 1.41932 1.09447 1.12434 1.57391 1.19595 0.92900 0.92191 1.41369 0.90384 1.26006 0.96435 1.01827 0.97029 1.69659 1.06483 1.32920 1.47063 0.85021 0.77793 0.77101 0.78628 1.19920 1.19519 1.19678 1.22738 0.95842 0.88156 1.02528 1.22735 0.92598 0.98475 0.88999 0.91906 0.92621 0.93837 0.92937 0.91191 0.92453 0.90926 0.89788 0.88549 0.93095 0.92671 0.88040 0.90841 0.91427 0.90458 0.95562 0.90777 0.91906 0.86243 0.77021 0.91343 0.93911 0.86642 0.84136 0.90005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 8.52 71.98 0.61 -2.44 16 2 C -0.07 -1.18 1.84 -10.80 -0.02 -1.20 16 3 C -0.14 -1.48 8.54 71.98 0.61 -0.87 16 4 C -0.07 -1.14 0.30 -52.93 -0.02 -1.16 16 5 C -0.16 -1.80 7.27 71.98 0.52 -1.28 16 6 C -0.15 -1.78 7.20 71.98 0.52 -1.26 16 7 C 0.52 13.07 6.08 87.66 0.53 13.61 16 8 O -0.58 -19.62 13.35 -3.03 -0.04 -19.66 16 9 N -0.61 -14.95 2.99 -817.04 -2.44 -17.39 16 10 C 0.13 3.94 6.64 86.50 0.57 4.52 16 11 C 0.05 1.72 5.27 86.54 0.46 2.17 16 12 N -0.53 -16.15 4.37 -898.89 -3.93 -20.08 16 13 C 0.06 1.94 5.45 85.56 0.47 2.41 16 14 C 0.44 20.53 7.44 87.66 0.65 21.18 16 15 O -0.61 -33.27 13.91 -3.08 -0.04 -33.31 16 16 N -0.57 -29.12 5.29 -306.98 -1.62 -30.74 16 17 C -0.33 -18.69 9.68 84.04 0.81 -17.88 16 18 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 19 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 20 N -0.92 -49.44 13.05 21.66 0.28 -49.16 16 21 Si 0.99 43.02 29.55 68.60 2.03 45.05 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 23 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 24 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 25 C 0.04 0.70 5.50 86.38 0.47 1.18 16 26 C 0.09 1.63 4.04 86.35 0.35 1.98 16 27 H 0.06 1.04 6.58 -2.39 -0.02 1.03 16 28 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.04 1.16 5.73 -2.39 -0.01 1.14 16 30 H 0.05 1.12 8.03 -2.39 -0.02 1.10 16 31 H 0.07 0.56 6.83 -2.38 -0.02 0.54 16 32 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.07 0.57 6.29 -2.39 -0.02 0.55 16 34 H 0.08 0.78 4.70 -2.39 -0.01 0.76 16 35 H 0.10 0.66 6.11 -2.39 -0.01 0.64 16 36 H 0.05 0.74 6.78 -2.38 -0.02 0.72 16 37 H 0.05 0.76 8.03 -2.38 -0.02 0.74 16 38 H 0.10 0.60 7.29 -2.38 -0.02 0.58 16 39 H 0.07 0.83 4.96 -2.39 -0.01 0.81 16 40 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 41 H 0.08 2.57 7.04 -2.39 -0.02 2.56 16 42 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.07 3.11 5.77 -2.38 -0.01 3.10 16 44 H 0.06 1.91 8.12 -2.39 -0.02 1.89 16 45 H 0.12 3.27 7.97 -2.39 -0.02 3.25 16 46 H 0.40 19.00 7.90 -92.71 -0.73 18.27 16 47 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 48 H 0.04 0.82 8.06 -2.38 -0.02 0.80 16 49 H 0.12 1.71 7.99 -2.39 -0.02 1.69 16 50 H 0.14 1.53 2.78 -2.38 -0.01 1.52 16 51 H 0.08 1.42 8.04 -2.39 -0.02 1.40 16 Total: -1.00 -72.88 376.16 1.47 -71.41 By element: Atomic # 1 Polarization: 32.95 SS G_CDS: 0.22 Total: 33.17 kcal Atomic # 6 Polarization: 13.69 SS G_CDS: 7.02 Total: 20.71 kcal Atomic # 7 Polarization: -109.65 SS G_CDS: -7.71 Total: -117.36 kcal Atomic # 8 Polarization: -52.89 SS G_CDS: -0.08 Total: -52.97 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -72.88 1.47 -71.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112888188.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.318 kcal (2) G-P(sol) polarization free energy of solvation -72.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds