Wall clock time and date at job start Fri Apr 10 2020 18:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00249 * 2 1 4 4 C 1.53000 * 109.47128 * 180.02562 * 3 2 1 5 5 C 1.50696 * 115.55137 * 294.33040 * 4 3 2 6 6 O 1.21287 * 119.99601 * 263.33823 * 5 4 3 7 7 N 1.34782 * 120.00400 * 83.33468 * 5 4 3 8 8 C 1.47080 * 120.88071 * 174.84671 * 7 5 4 9 9 C 1.53235 * 108.51927 * 231.16154 * 8 7 5 10 10 N 1.46903 * 109.34321 * 306.17243 * 9 8 7 11 11 C 1.46898 * 111.00091 * 187.25056 * 10 9 8 12 12 C 1.50701 * 109.46791 * 169.99591 * 11 10 9 13 13 O 1.21289 * 120.00165 * 0.02562 * 12 11 10 14 14 N 1.34782 * 119.99747 * 180.02562 * 12 11 10 15 15 C 1.37098 * 119.99727 * 180.02562 * 14 12 11 16 16 H 1.07998 * 119.99989 * 359.97438 * 15 14 12 17 17 C 1.38952 * 119.99779 * 180.02562 * 15 14 12 18 18 N 1.31409 * 119.99984 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00097 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47261 * 89.99419 * 19 17 15 21 21 H 1.48490 * 109.47286 * 210.00019 * 19 17 15 22 22 H 1.48506 * 109.46737 * 329.99748 * 19 17 15 23 23 C 1.46898 * 111.26487 * 63.10388 * 10 9 8 24 24 C 1.47072 * 120.87872 * 354.82342 * 7 5 4 25 25 C 1.52999 * 117.51819 * 80.02830 * 4 3 2 26 26 C 1.52995 * 60.00177 * 107.48252 * 25 4 3 27 27 H 1.09000 * 109.47326 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46714 * 299.99848 * 1 2 3 29 29 H 1.08994 * 109.47284 * 59.99909 * 1 2 3 30 30 H 1.08995 * 109.46991 * 60.00483 * 3 2 1 31 31 H 1.08993 * 109.47053 * 299.99959 * 3 2 1 32 32 H 1.09001 * 109.62910 * 111.45473 * 8 7 5 33 33 H 1.08994 * 109.79122 * 350.96755 * 8 7 5 34 34 H 1.09000 * 109.49731 * 186.21177 * 9 8 7 35 35 H 1.09006 * 109.49364 * 66.13013 * 9 8 7 36 36 H 1.08995 * 109.47707 * 290.00121 * 11 10 9 37 37 H 1.09003 * 109.46805 * 50.00446 * 11 10 9 38 38 H 0.96993 * 119.99876 * 0.02562 * 14 12 11 39 39 H 0.97001 * 120.00098 * 180.02562 * 18 17 15 40 40 H 1.08999 * 109.49829 * 56.85705 * 23 10 9 41 41 H 1.09005 * 109.49382 * 176.93927 * 23 10 9 42 42 H 1.08999 * 109.63007 * 248.54526 * 24 7 5 43 43 H 1.09006 * 109.63107 * 8.93528 * 24 7 5 44 44 H 1.08996 * 117.50205 * 214.97055 * 25 4 3 45 45 H 1.09004 * 117.49745 * 359.97438 * 25 4 3 46 46 H 1.08999 * 117.49851 * 252.51413 * 26 25 4 47 47 H 1.09001 * 117.50093 * 107.48642 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1397 0.5746 1.2378 6 8 4.5694 1.2897 2.1182 7 7 4.2026 -0.7655 1.3672 8 6 4.8879 -1.3819 2.5134 9 6 5.8790 -2.4243 1.9848 10 7 5.1728 -3.3645 1.1042 11 6 6.0475 -4.4781 0.7135 12 6 5.2312 -5.5391 0.0214 13 8 4.0382 -5.3827 -0.1316 14 7 5.8268 -6.6617 -0.4274 15 6 5.0842 -7.6267 -1.0574 16 1 4.0219 -7.4875 -1.1937 17 6 5.6981 -8.7844 -1.5197 18 7 6.9906 -8.9540 -1.3534 19 14 4.6863 -10.0996 -2.3775 20 1 4.6579 -9.8287 -3.8373 21 1 5.2960 -11.4312 -2.1329 22 1 3.3004 -10.0841 -1.8441 23 6 4.6296 -2.6820 -0.0777 24 6 3.5872 -1.6502 0.3663 25 6 4.2211 0.8947 -1.3374 26 6 4.3311 2.2843 -0.7067 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 1.6888 1.8463 0.8900 31 1 1.6887 1.8463 -0.8899 32 1 4.1564 -1.8670 3.1598 33 1 5.4248 -0.6186 3.0764 34 1 6.3158 -2.9684 2.8222 35 1 6.6685 -1.9239 1.4241 36 1 6.8192 -4.1134 0.0355 37 1 6.5153 -4.9017 1.6022 38 1 6.7807 -6.7869 -0.3047 39 1 7.4192 -9.7620 -1.6764 40 1 5.4365 -2.1780 -0.6097 41 1 4.1602 -3.4129 -0.7362 42 1 2.7308 -2.1610 0.8063 43 1 3.2616 -1.0619 -0.4916 44 1 5.1091 0.2629 -1.3210 45 1 3.5855 0.7897 -2.2166 46 1 3.7678 3.0937 -1.1711 47 1 5.2914 2.5667 -0.2753 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113100887.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:11 Heat of formation + Delta-G solvation = -67.566106 kcal Electronic energy + Delta-G solvation = -28846.100641 eV Core-core repulsion = 24837.631682 eV Total energy + Delta-G solvation = -4008.468958 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.64389 -38.87945 -38.06126 -37.24096 -36.35624 -34.38826 -33.71743 -31.25513 -30.99245 -28.94447 -28.45085 -26.12824 -25.65010 -24.26337 -23.67333 -22.70073 -22.68159 -20.51306 -19.23989 -18.44475 -17.85806 -17.32320 -16.68102 -16.20714 -16.08088 -15.85662 -15.46555 -15.01348 -14.90415 -14.79814 -14.52484 -14.33232 -13.89032 -13.79975 -13.60220 -13.58929 -12.78538 -12.68870 -12.41933 -12.30283 -11.92667 -11.85725 -11.74792 -11.54408 -11.49004 -11.20448 -11.10720 -11.04338 -10.81558 -10.77013 -10.45842 -10.39142 -10.21979 -10.02771 -9.58564 -9.47264 -8.75699 -8.31665 -7.97505 -7.85148 -6.41890 -3.82628 2.54050 2.87391 3.17362 3.19339 3.26261 3.32019 3.69851 3.89902 3.99118 4.24174 4.29341 4.40212 4.60825 4.68041 4.95556 4.98320 5.07505 5.13131 5.14543 5.18756 5.24160 5.30534 5.32605 5.37814 5.40555 5.52402 5.52922 5.56497 5.59621 5.72770 5.78432 5.80301 5.87976 5.93213 5.99619 6.26736 6.29801 6.35243 6.61428 6.86379 7.20250 7.37263 7.50384 7.55072 8.06283 8.16933 8.61626 9.17952 9.54447 10.06033 10.75877 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.017764 B = 0.002873 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.880486 B = 9744.971892 C =10489.858520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.380 6.380 3 C 0.106 3.894 4 C -0.158 4.158 5 C 0.556 3.444 6 O -0.551 6.551 7 N -0.598 5.598 8 C 0.118 3.882 9 C 0.042 3.958 10 N -0.514 5.514 11 C 0.046 3.954 12 C 0.444 3.556 13 O -0.577 6.577 14 N -0.564 5.564 15 C -0.298 4.298 16 H 0.103 0.897 17 C 0.022 3.978 18 N -0.902 5.902 19 Si 0.929 3.071 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.269 1.269 23 C 0.038 3.962 24 C 0.124 3.876 25 C -0.155 4.155 26 C -0.136 4.136 27 H 0.091 0.909 28 H 0.039 0.961 29 H 0.041 0.959 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.033 0.967 36 H 0.047 0.953 37 H 0.089 0.911 38 H 0.392 0.608 39 H 0.271 0.729 40 H 0.023 0.977 41 H 0.114 0.886 42 H 0.079 0.921 43 H 0.100 0.900 44 H 0.101 0.899 45 H 0.108 0.892 46 H 0.105 0.895 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.232 19.879 1.501 20.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.299 6.299 3 C 0.029 3.971 4 C -0.161 4.161 5 C 0.343 3.657 6 O -0.429 6.429 7 N -0.330 5.330 8 C -0.005 4.005 9 C -0.087 4.087 10 N -0.239 5.239 11 C -0.085 4.085 12 C 0.229 3.771 13 O -0.461 6.461 14 N -0.201 5.201 15 C -0.428 4.428 16 H 0.121 0.879 17 C -0.179 4.179 18 N -0.544 5.544 19 Si 0.757 3.243 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.194 1.194 23 C -0.091 4.091 24 C 0.001 3.999 25 C -0.192 4.192 26 C -0.174 4.174 27 H 0.109 0.891 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.109 0.891 34 H 0.104 0.896 35 H 0.051 0.949 36 H 0.065 0.935 37 H 0.107 0.893 38 H 0.225 0.775 39 H 0.081 0.919 40 H 0.041 0.959 41 H 0.132 0.868 42 H 0.097 0.903 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.126 0.874 46 H 0.123 0.877 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -5.976 19.809 2.080 20.795 hybrid contribution 0.684 -0.414 -0.769 1.109 sum -5.292 19.395 1.311 20.147 Atomic orbital electron populations 1.22764 0.80720 1.03287 0.99724 1.87998 1.19819 1.26718 1.95360 1.21823 0.88848 0.85539 1.00919 1.21284 0.94228 1.06737 0.93837 1.19330 0.78107 0.81794 0.86470 1.90663 1.49338 1.60857 1.42067 1.48131 1.54472 1.05147 1.25222 1.21685 0.95509 0.95067 0.88214 1.22498 0.94897 0.93738 0.97588 1.61519 1.35463 1.08926 1.17978 1.21853 0.94126 0.92398 1.00130 1.19723 0.88599 0.84070 0.84661 1.90480 1.15165 1.79193 1.61245 1.41873 1.10970 1.16085 1.51149 1.19695 0.94413 0.96242 1.32427 0.87882 1.25257 0.95944 0.98644 0.98102 1.69611 1.09170 1.28544 1.47029 0.85865 0.79678 0.79465 0.79332 1.20449 1.20964 1.19389 1.22716 0.96962 0.96822 0.92563 1.21960 0.95354 0.90714 0.91846 1.23152 1.02605 0.98877 0.94559 1.23033 1.01315 0.92209 1.00829 0.89098 0.94192 0.94086 0.92432 0.92154 0.90632 0.89140 0.89562 0.94891 0.93545 0.89271 0.77515 0.91888 0.95902 0.86782 0.90251 0.88211 0.88045 0.87372 0.87684 0.87720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.37 16 2 O -0.38 -4.09 7.80 -35.23 -0.27 -4.37 16 3 C 0.11 1.00 5.76 37.16 0.21 1.22 16 4 C -0.16 -1.71 1.30 -155.66 -0.20 -1.91 16 5 C 0.56 7.89 6.80 -10.98 -0.07 7.82 16 6 O -0.55 -9.37 16.52 5.55 0.09 -9.28 16 7 N -0.60 -8.38 3.01 -172.47 -0.52 -8.90 16 8 C 0.12 1.59 6.57 -3.60 -0.02 1.56 16 9 C 0.04 0.56 5.62 -3.70 -0.02 0.54 16 10 N -0.51 -8.51 4.37 -235.76 -1.03 -9.54 16 11 C 0.05 0.81 5.45 -4.98 -0.03 0.79 16 12 C 0.44 10.21 7.44 -10.98 -0.08 10.13 16 13 O -0.58 -14.99 13.91 5.55 0.08 -14.91 16 14 N -0.56 -14.04 5.29 -10.96 -0.06 -14.10 16 15 C -0.30 -8.17 9.68 -14.93 -0.14 -8.32 16 16 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 17 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 18 N -0.90 -24.34 13.05 55.50 0.72 -23.62 16 19 Si 0.93 20.81 29.55 -169.99 -5.02 15.79 16 20 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 21 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 23 C 0.04 0.60 5.26 -3.70 -0.02 0.59 16 24 C 0.12 1.75 4.97 -3.61 -0.02 1.74 16 25 C -0.15 -1.42 8.24 -26.73 -0.22 -1.64 16 26 C -0.14 -1.19 9.87 -26.73 -0.26 -1.45 16 27 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.04 0.29 8.14 -51.92 -0.42 -0.13 16 29 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.09 1.20 7.11 -51.93 -0.37 0.83 16 34 H 0.09 1.03 7.99 -51.93 -0.41 0.61 16 35 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 37 H 0.09 1.42 7.97 -51.93 -0.41 1.01 16 38 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 39 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 40 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.11 2.18 5.77 -51.93 -0.30 1.88 16 42 H 0.08 1.26 8.13 -51.93 -0.42 0.83 16 43 H 0.10 1.29 3.92 -51.93 -0.20 1.09 16 44 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 45 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 378.31 15.07 5.70 5.70 Total: -1.00 -32.57 378.31 -7.63 -40.20 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -7.45 Total: 10.11 kcal Atomic # 6 Polarization: 12.78 SS G_CDS: 0.13 Total: 12.91 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: -0.88 Total: -56.16 kcal Atomic # 8 Polarization: -28.45 SS G_CDS: -0.11 Total: -28.56 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.57 -7.63 -40.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113100887.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.368 kcal (2) G-P(sol) polarization free energy of solvation -32.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds