Wall clock time and date at job start Fri Apr 10 2020 18:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00249 * 2 1 4 4 C 1.53000 * 109.47128 * 180.02562 * 3 2 1 5 5 C 1.50696 * 115.55137 * 294.33040 * 4 3 2 6 6 O 1.21287 * 119.99601 * 263.33823 * 5 4 3 7 7 N 1.34782 * 120.00400 * 83.33468 * 5 4 3 8 8 C 1.47080 * 120.88071 * 174.84671 * 7 5 4 9 9 C 1.53235 * 108.51927 * 231.16154 * 8 7 5 10 10 N 1.46903 * 109.34321 * 306.17243 * 9 8 7 11 11 C 1.46898 * 111.00091 * 187.25056 * 10 9 8 12 12 C 1.50701 * 109.46791 * 169.99591 * 11 10 9 13 13 O 1.21289 * 120.00165 * 0.02562 * 12 11 10 14 14 N 1.34782 * 119.99747 * 180.02562 * 12 11 10 15 15 C 1.37098 * 119.99727 * 180.02562 * 14 12 11 16 16 H 1.07998 * 119.99989 * 359.97438 * 15 14 12 17 17 C 1.38952 * 119.99779 * 180.02562 * 15 14 12 18 18 N 1.31409 * 119.99984 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00097 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47261 * 89.99419 * 19 17 15 21 21 H 1.48490 * 109.47286 * 210.00019 * 19 17 15 22 22 H 1.48506 * 109.46737 * 329.99748 * 19 17 15 23 23 C 1.46898 * 111.26487 * 63.10388 * 10 9 8 24 24 C 1.47072 * 120.87872 * 354.82342 * 7 5 4 25 25 C 1.52999 * 117.51819 * 80.02830 * 4 3 2 26 26 C 1.52995 * 60.00177 * 107.48252 * 25 4 3 27 27 H 1.09000 * 109.47326 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46714 * 299.99848 * 1 2 3 29 29 H 1.08994 * 109.47284 * 59.99909 * 1 2 3 30 30 H 1.08995 * 109.46991 * 60.00483 * 3 2 1 31 31 H 1.08993 * 109.47053 * 299.99959 * 3 2 1 32 32 H 1.09001 * 109.62910 * 111.45473 * 8 7 5 33 33 H 1.08994 * 109.79122 * 350.96755 * 8 7 5 34 34 H 1.09000 * 109.49731 * 186.21177 * 9 8 7 35 35 H 1.09006 * 109.49364 * 66.13013 * 9 8 7 36 36 H 1.08995 * 109.47707 * 290.00121 * 11 10 9 37 37 H 1.09003 * 109.46805 * 50.00446 * 11 10 9 38 38 H 0.96993 * 119.99876 * 0.02562 * 14 12 11 39 39 H 0.97001 * 120.00098 * 180.02562 * 18 17 15 40 40 H 1.08999 * 109.49829 * 56.85705 * 23 10 9 41 41 H 1.09005 * 109.49382 * 176.93927 * 23 10 9 42 42 H 1.08999 * 109.63007 * 248.54526 * 24 7 5 43 43 H 1.09006 * 109.63107 * 8.93528 * 24 7 5 44 44 H 1.08996 * 117.50205 * 214.97055 * 25 4 3 45 45 H 1.09004 * 117.49745 * 359.97438 * 25 4 3 46 46 H 1.08999 * 117.49851 * 252.51413 * 26 25 4 47 47 H 1.09001 * 117.50093 * 107.48642 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1397 0.5746 1.2378 6 8 4.5694 1.2897 2.1182 7 7 4.2026 -0.7655 1.3672 8 6 4.8879 -1.3819 2.5134 9 6 5.8790 -2.4243 1.9848 10 7 5.1728 -3.3645 1.1042 11 6 6.0475 -4.4781 0.7135 12 6 5.2312 -5.5391 0.0214 13 8 4.0382 -5.3827 -0.1316 14 7 5.8268 -6.6617 -0.4274 15 6 5.0842 -7.6267 -1.0574 16 1 4.0219 -7.4875 -1.1937 17 6 5.6981 -8.7844 -1.5197 18 7 6.9906 -8.9540 -1.3534 19 14 4.6863 -10.0996 -2.3775 20 1 4.6579 -9.8287 -3.8373 21 1 5.2960 -11.4312 -2.1329 22 1 3.3004 -10.0841 -1.8441 23 6 4.6296 -2.6820 -0.0777 24 6 3.5872 -1.6502 0.3663 25 6 4.2211 0.8947 -1.3374 26 6 4.3311 2.2843 -0.7067 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 1.6888 1.8463 0.8900 31 1 1.6887 1.8463 -0.8899 32 1 4.1564 -1.8670 3.1598 33 1 5.4248 -0.6186 3.0764 34 1 6.3158 -2.9684 2.8222 35 1 6.6685 -1.9239 1.4241 36 1 6.8192 -4.1134 0.0355 37 1 6.5153 -4.9017 1.6022 38 1 6.7807 -6.7869 -0.3047 39 1 7.4192 -9.7620 -1.6764 40 1 5.4365 -2.1780 -0.6097 41 1 4.1602 -3.4129 -0.7362 42 1 2.7308 -2.1610 0.8063 43 1 3.2616 -1.0619 -0.4916 44 1 5.1091 0.2629 -1.3210 45 1 3.5855 0.7897 -2.2166 46 1 3.7678 3.0937 -1.1711 47 1 5.2914 2.5667 -0.2753 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113100887.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:10 Heat of formation + Delta-G solvation = -91.359329 kcal Electronic energy + Delta-G solvation = -28847.132392 eV Core-core repulsion = 24837.631682 eV Total energy + Delta-G solvation = -4009.500710 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.68789 -40.38983 -39.11468 -38.53906 -37.19794 -36.03122 -35.33160 -33.24276 -32.16781 -30.25045 -29.22972 -27.49826 -26.59368 -25.72632 -24.92755 -23.83141 -23.39663 -21.60830 -21.03025 -19.87968 -19.46945 -18.28046 -17.80889 -17.49644 -17.00618 -16.87174 -16.61463 -16.38297 -16.27789 -16.08280 -15.92558 -15.39876 -15.35831 -15.16846 -15.13076 -14.63902 -14.09093 -13.85309 -13.50769 -13.34138 -13.28625 -13.18966 -12.93719 -12.75878 -12.53359 -12.47659 -12.39017 -12.34213 -12.16978 -12.12070 -12.08116 -11.59532 -11.42043 -11.25448 -10.88621 -10.47660 -10.31669 -9.97650 -9.75541 -9.20700 -8.43751 -5.91873 1.39769 1.43659 1.47005 1.56163 1.87751 2.08574 2.30223 2.42620 2.72588 2.99848 3.23395 3.35933 3.39235 3.65643 3.84064 3.88906 4.00349 4.01857 4.15032 4.26205 4.27895 4.36050 4.46455 4.49199 4.52793 4.53210 4.58650 4.61031 4.65366 4.69533 4.72110 4.77716 4.87502 4.91645 4.92868 4.99542 5.13481 5.15054 5.43721 5.45392 5.83564 6.05945 6.14697 6.19999 6.38153 6.63796 7.06703 7.16252 7.60019 8.15500 8.73736 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.017764 B = 0.002873 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.880486 B = 9744.971892 C =10489.858520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.405 6.405 3 C 0.108 3.892 4 C -0.178 4.178 5 C 0.551 3.449 6 O -0.584 6.584 7 N -0.600 5.600 8 C 0.116 3.884 9 C 0.048 3.952 10 N -0.532 5.532 11 C 0.058 3.942 12 C 0.443 3.557 13 O -0.610 6.610 14 N -0.575 5.575 15 C -0.329 4.329 16 H 0.081 0.919 17 C -0.014 4.014 18 N -0.922 5.922 19 Si 0.991 3.009 20 H -0.271 1.271 21 H -0.273 1.273 22 H -0.272 1.272 23 C 0.043 3.957 24 C 0.141 3.859 25 C -0.148 4.148 26 C -0.122 4.122 27 H 0.086 0.914 28 H 0.044 0.956 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.107 0.893 35 H 0.040 0.960 36 H 0.066 0.934 37 H 0.112 0.888 38 H 0.395 0.605 39 H 0.276 0.724 40 H 0.034 0.966 41 H 0.081 0.919 42 H 0.059 0.941 43 H 0.114 0.886 44 H 0.090 0.910 45 H 0.127 0.873 46 H 0.134 0.866 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.121 20.863 0.794 21.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.325 6.325 3 C 0.031 3.969 4 C -0.181 4.181 5 C 0.340 3.660 6 O -0.465 6.465 7 N -0.331 5.331 8 C -0.006 4.006 9 C -0.080 4.080 10 N -0.257 5.257 11 C -0.073 4.073 12 C 0.231 3.769 13 O -0.496 6.496 14 N -0.212 5.212 15 C -0.459 4.459 16 H 0.099 0.901 17 C -0.213 4.213 18 N -0.564 5.564 19 Si 0.815 3.185 20 H -0.196 1.196 21 H -0.198 1.198 22 H -0.197 1.197 23 C -0.085 4.085 24 C 0.018 3.982 25 C -0.185 4.185 26 C -0.159 4.159 27 H 0.105 0.895 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.108 0.892 32 H 0.090 0.910 33 H 0.112 0.888 34 H 0.125 0.875 35 H 0.058 0.942 36 H 0.083 0.917 37 H 0.130 0.870 38 H 0.229 0.771 39 H 0.086 0.914 40 H 0.052 0.948 41 H 0.099 0.901 42 H 0.078 0.922 43 H 0.132 0.868 44 H 0.108 0.892 45 H 0.145 0.855 46 H 0.152 0.848 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.851 20.802 1.379 21.653 hybrid contribution 0.635 -0.664 -0.497 1.044 sum -5.216 20.138 0.882 20.821 Atomic orbital electron populations 1.22867 0.79548 1.03469 1.00898 1.87947 1.21220 1.27736 1.95569 1.21892 0.87760 0.85216 1.02018 1.21360 0.95229 1.08562 0.92966 1.19943 0.77376 0.81448 0.87202 1.90637 1.50839 1.61392 1.43591 1.48206 1.54344 1.05395 1.25144 1.21712 0.95535 0.95151 0.88233 1.22525 0.94658 0.93218 0.97570 1.61481 1.36138 1.09625 1.18445 1.21727 0.93492 0.91225 1.00818 1.20682 0.88638 0.84247 0.83369 1.90464 1.17055 1.79907 1.62135 1.41934 1.10995 1.16511 1.51792 1.19659 0.93897 0.97907 1.34409 0.90149 1.26012 0.97030 1.00044 0.98231 1.69674 1.10114 1.29236 1.47328 0.84948 0.77995 0.77125 0.78419 1.19627 1.19807 1.19722 1.22566 0.97450 0.96278 0.92240 1.21733 0.93964 0.90301 0.92196 1.23206 1.02106 0.99092 0.94138 1.23148 1.00731 0.92579 0.99469 0.89499 0.93718 0.92171 0.93030 0.89224 0.90975 0.88789 0.87532 0.94174 0.91657 0.86977 0.77119 0.91411 0.94819 0.90109 0.92250 0.86787 0.89153 0.85521 0.84793 0.88707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 113.37 1.25 1.67 16 2 O -0.41 -8.31 7.80 -148.98 -1.16 -9.48 16 3 C 0.11 1.85 5.76 71.98 0.41 2.26 16 4 C -0.18 -3.59 1.30 -52.93 -0.07 -3.66 16 5 C 0.55 15.32 6.80 87.65 0.60 15.92 16 6 O -0.58 -19.72 16.52 -3.05 -0.05 -19.77 16 7 N -0.60 -16.54 3.01 -817.95 -2.46 -19.00 16 8 C 0.12 3.05 6.57 86.35 0.57 3.62 16 9 C 0.05 1.22 5.62 86.38 0.49 1.71 16 10 N -0.53 -17.16 4.37 -899.81 -3.93 -21.09 16 11 C 0.06 1.99 5.45 85.56 0.47 2.45 16 12 C 0.44 20.59 7.44 87.66 0.65 21.24 16 13 O -0.61 -32.54 13.91 -3.06 -0.04 -32.59 16 14 N -0.57 -29.00 5.29 -306.98 -1.62 -30.62 16 15 C -0.33 -18.40 9.68 84.04 0.81 -17.59 16 16 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 17 C -0.01 -0.72 5.50 84.93 0.47 -0.26 16 18 N -0.92 -49.48 13.05 21.66 0.28 -49.20 16 19 Si 0.99 42.53 29.55 68.60 2.03 44.56 16 20 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 21 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 23 C 0.04 1.38 5.26 86.38 0.45 1.83 16 24 C 0.14 3.98 4.97 86.35 0.43 4.41 16 25 C -0.15 -2.41 8.24 30.59 0.25 -2.15 16 26 C -0.12 -1.84 9.87 30.59 0.30 -1.54 16 27 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.04 0.61 8.14 -2.38 -0.02 0.59 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.09 1.00 8.09 -2.39 -0.02 0.99 16 32 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.09 2.42 7.11 -2.39 -0.02 2.41 16 34 H 0.11 2.27 7.99 -2.39 -0.02 2.25 16 35 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.07 2.01 8.12 -2.39 -0.02 1.99 16 37 H 0.11 3.33 7.97 -2.39 -0.02 3.31 16 38 H 0.40 19.03 7.90 -92.71 -0.73 18.29 16 39 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 40 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.08 3.17 5.77 -2.38 -0.01 3.16 16 42 H 0.06 1.93 8.13 -2.39 -0.02 1.91 16 43 H 0.11 2.89 3.92 -2.38 -0.01 2.88 16 44 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.13 1.59 8.14 -2.38 -0.02 1.57 16 46 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 47 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -71.20 378.31 0.36 -70.83 By element: Atomic # 1 Polarization: 36.18 SS G_CDS: 0.25 Total: 36.43 kcal Atomic # 6 Polarization: 22.84 SS G_CDS: 7.08 Total: 29.92 kcal Atomic # 7 Polarization: -112.18 SS G_CDS: -7.73 Total: -119.91 kcal Atomic # 8 Polarization: -60.58 SS G_CDS: -1.26 Total: -61.83 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -71.20 0.36 -70.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113100887.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.526 kcal (2) G-P(sol) polarization free energy of solvation -71.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds