Wall clock time and date at job start Fri Apr 10 2020 18:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.46999 * 2 1 4 4 C 1.53007 * 109.47284 * 179.97438 * 3 2 1 5 5 C 1.53007 * 109.46318 * 60.00166 * 4 3 2 6 6 C 1.52994 * 109.47266 * 300.00568 * 4 3 2 7 7 C 1.50689 * 109.47305 * 179.97438 * 4 3 2 8 8 O 1.21284 * 120.00373 * 1.29959 * 7 4 3 9 9 N 1.34784 * 120.00184 * 181.29992 * 7 4 3 10 10 C 1.47071 * 120.87850 * 354.97050 * 9 7 4 11 11 C 1.53697 * 108.28017 * 128.75525 * 10 9 7 12 12 N 1.46900 * 109.25297 * 54.08140 * 11 10 9 13 13 C 1.46900 * 110.99844 * 172.61413 * 12 11 10 14 14 C 1.50703 * 109.46778 * 294.29797 * 13 12 11 15 15 O 1.21294 * 120.00090 * 0.02562 * 14 13 12 16 16 N 1.34775 * 120.00049 * 179.97438 * 14 13 12 17 17 C 1.37099 * 120.00290 * 180.02562 * 16 14 13 18 18 H 1.07997 * 119.99901 * 0.02562 * 17 16 14 19 19 C 1.38945 * 120.00240 * 180.02562 * 17 16 14 20 20 N 1.31410 * 120.00450 * 180.02562 * 19 17 16 21 21 Si 1.86805 * 119.99876 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47174 * 90.00242 * 21 19 17 23 23 H 1.48502 * 109.47035 * 210.00121 * 21 19 17 24 24 H 1.48492 * 109.47397 * 329.99971 * 21 19 17 25 25 C 1.46901 * 111.27096 * 296.75888 * 12 11 10 26 26 C 1.47073 * 120.88143 * 175.24684 * 9 7 4 27 27 H 1.09004 * 109.46988 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47422 * 299.99824 * 1 2 3 29 29 H 1.08997 * 109.46977 * 60.00090 * 1 2 3 30 30 H 1.08997 * 109.47286 * 239.99410 * 2 1 3 31 31 H 1.09007 * 109.47039 * 119.99930 * 2 1 3 32 32 H 1.09000 * 109.47368 * 60.00081 * 3 2 1 33 33 H 1.08997 * 109.47183 * 299.99784 * 3 2 1 34 34 H 1.08999 * 109.46820 * 289.13665 * 5 4 3 35 35 H 1.08995 * 109.47535 * 49.14539 * 5 4 3 36 36 H 1.09008 * 109.46643 * 169.14339 * 5 4 3 37 37 H 1.09003 * 109.47246 * 189.08203 * 6 4 3 38 38 H 1.09001 * 109.46849 * 309.07884 * 6 4 3 39 39 H 1.08999 * 109.47638 * 69.07596 * 6 4 3 40 40 H 1.09005 * 109.63117 * 248.52479 * 10 9 7 41 41 H 1.09007 * 109.62906 * 9.10572 * 10 9 7 42 42 H 1.09003 * 109.64685 * 294.08283 * 11 10 9 43 43 H 1.08992 * 109.42643 * 173.94935 * 11 10 9 44 44 H 1.09001 * 109.47436 * 54.30024 * 13 12 11 45 45 H 1.08999 * 109.47188 * 174.30375 * 13 12 11 46 46 H 0.97005 * 119.99644 * 0.02562 * 16 14 13 47 47 H 0.97004 * 120.00590 * 180.02562 * 20 19 17 48 48 H 1.09001 * 109.49225 * 303.14944 * 25 12 11 49 49 H 1.08990 * 109.49545 * 183.06971 * 25 12 11 50 50 H 1.08996 * 109.63391 * 350.90224 * 26 9 7 51 51 H 1.09007 * 109.62942 * 111.47822 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0804 0.7211 -1.2484 6 6 4.0795 0.7214 1.2501 7 6 4.0723 2.8632 0.0000 8 8 3.2844 3.7850 0.0229 9 7 5.3971 3.1097 -0.0261 10 6 6.3711 2.0107 0.0565 11 6 7.3693 2.1632 -1.1021 12 7 7.9508 3.5117 -1.0663 13 6 9.0365 3.6430 -2.0471 14 6 10.1789 2.7415 -1.6555 15 8 10.0965 2.0566 -0.6578 16 7 11.2917 2.6955 -2.4144 17 6 12.3308 1.8750 -2.0585 18 1 12.2574 1.2652 -1.1702 19 6 13.4782 1.8280 -2.8406 20 7 14.4740 1.0411 -2.4998 21 14 13.6048 2.8822 -4.3776 22 1 14.1970 4.1983 -4.0277 23 1 14.4679 2.2007 -5.3756 24 1 12.2504 3.0857 -4.9513 25 6 6.9237 4.5407 -1.2771 26 6 5.9072 4.4851 -0.1318 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9562 -0.8900 34 1 3.8838 -0.3471 -1.1568 35 1 3.5681 1.1107 -2.1280 36 1 5.1532 0.8857 -1.3501 37 1 5.1574 0.8598 1.3353 38 1 3.5895 1.1331 2.1324 39 1 3.8548 -0.3424 1.1728 40 1 6.8999 2.0608 1.0084 41 1 5.8531 1.0553 -0.0280 42 1 6.8546 2.0141 -2.0514 43 1 8.1620 1.4224 -0.9975 44 1 8.6711 3.3588 -3.0340 45 1 9.3813 4.6768 -2.0712 46 1 11.3574 3.2430 -3.2125 47 1 15.2753 1.0086 -3.0456 48 1 6.4152 4.3584 -2.2238 49 1 7.3932 5.5240 -1.2994 50 1 5.0825 5.1664 -0.3407 51 1 6.3923 4.7686 0.8023 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113285065.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:14 Heat of formation + Delta-G solvation = -52.262785 kcal Electronic energy + Delta-G solvation = -29073.454583 eV Core-core repulsion = 25201.482321 eV Total energy + Delta-G solvation = -3871.972262 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.95529 -38.97902 -37.57698 -36.79758 -34.73781 -33.92118 -32.89638 -31.72303 -30.92032 -29.00395 -27.67496 -26.85760 -26.06180 -24.20236 -23.72028 -23.16042 -21.48820 -19.94981 -19.44780 -18.78477 -18.27147 -16.80000 -16.29612 -16.05985 -15.66502 -15.39916 -15.20409 -15.11397 -14.69462 -14.59193 -14.23644 -14.11200 -13.94069 -13.60529 -13.47496 -13.18917 -12.75212 -12.59154 -12.53629 -12.47861 -12.35074 -12.02296 -11.97868 -11.82480 -11.68055 -11.36190 -11.30117 -11.28389 -11.24025 -11.12993 -10.91343 -10.71841 -10.63455 -10.52743 -10.01839 -9.61090 -9.56627 -8.91641 -8.49543 -8.22459 -8.03821 -6.35212 -3.86783 2.55185 2.87973 2.98992 3.03780 3.12269 3.67441 3.83489 4.06524 4.20646 4.39938 4.58809 4.63510 4.80486 4.86972 4.89094 4.94369 4.98409 5.12791 5.15479 5.18446 5.21047 5.30871 5.33825 5.42042 5.44354 5.44878 5.57699 5.58286 5.61436 5.63755 5.66636 5.70025 5.76764 5.78415 5.84551 5.85952 5.87493 5.94974 6.05731 6.10016 6.12778 6.17929 6.44658 7.00773 7.18721 7.37010 7.53917 8.09351 8.09843 8.55379 8.90667 9.37956 9.77847 10.77689 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.023442 B = 0.002513 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.168555 B =11139.090594 C =11645.173491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.092 4.092 4 C -0.081 4.081 5 C -0.159 4.159 6 C -0.160 4.160 7 C 0.525 3.475 8 O -0.548 6.548 9 N -0.609 5.609 10 C 0.093 3.907 11 C 0.036 3.964 12 N -0.514 5.514 13 C 0.043 3.957 14 C 0.452 3.548 15 O -0.560 6.560 16 N -0.590 5.590 17 C -0.305 4.305 18 H 0.120 0.880 19 C 0.042 3.958 20 N -0.880 5.880 21 Si 0.879 3.121 22 H -0.270 1.270 23 H -0.277 1.277 24 H -0.270 1.270 25 C 0.041 3.959 26 C 0.118 3.882 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.109 0.891 42 H 0.029 0.971 43 H 0.116 0.884 44 H 0.048 0.952 45 H 0.091 0.909 46 H 0.370 0.630 47 H 0.274 0.726 48 H 0.034 0.966 49 H 0.086 0.914 50 H 0.092 0.908 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.609 1.511 1.216 22.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.130 4.130 4 C -0.084 4.084 5 C -0.216 4.216 6 C -0.217 4.217 7 C 0.314 3.686 8 O -0.426 6.426 9 N -0.342 5.342 10 C -0.029 4.029 11 C -0.092 4.092 12 N -0.239 5.239 13 C -0.088 4.088 14 C 0.238 3.762 15 O -0.442 6.442 16 N -0.229 5.229 17 C -0.433 4.433 18 H 0.138 0.862 19 C -0.162 4.162 20 N -0.520 5.520 21 Si 0.706 3.294 22 H -0.196 1.196 23 H -0.202 1.202 24 H -0.196 1.196 25 C -0.088 4.088 26 C -0.005 4.005 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.100 0.900 41 H 0.127 0.873 42 H 0.047 0.953 43 H 0.134 0.866 44 H 0.066 0.934 45 H 0.109 0.891 46 H 0.203 0.797 47 H 0.084 0.916 48 H 0.053 0.947 49 H 0.105 0.895 50 H 0.110 0.890 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -22.656 1.524 2.328 22.827 hybrid contribution 0.161 0.770 -2.175 2.313 sum -22.495 2.294 0.153 22.613 Atomic orbital electron populations 1.21763 0.95912 1.01422 1.01854 1.21647 0.95802 0.96723 1.02304 1.21440 0.91657 0.96659 1.03213 1.20755 0.97476 0.92293 0.97858 1.22284 1.02448 1.00814 0.96033 1.22302 1.02586 1.00796 0.95997 1.20598 0.81621 0.91180 0.75242 1.90655 1.54983 1.46475 1.50486 1.48184 1.05430 1.08087 1.72518 1.22621 0.89729 0.90349 1.00170 1.22796 0.98082 0.92412 0.95933 1.61499 1.09288 1.03148 1.49926 1.21891 0.92416 1.00985 0.93517 1.19611 0.83893 0.86741 0.85991 1.90516 1.80855 1.45804 1.27039 1.42224 1.15740 1.40507 1.24430 1.19414 0.92300 1.19841 1.11772 0.86218 1.25042 0.95520 0.97346 0.98244 1.69616 1.05949 1.37347 1.39083 0.86680 0.78468 0.81029 0.83247 1.19585 1.20181 1.19565 1.22511 0.92774 0.96571 0.96911 1.21673 0.96558 0.83241 0.98981 0.92839 0.92791 0.92809 0.91703 0.91660 0.91358 0.91472 0.90985 0.92087 0.90649 0.90576 0.91988 0.91005 0.89975 0.87299 0.95314 0.86618 0.93352 0.89058 0.79719 0.91580 0.94743 0.89521 0.88985 0.90636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.16 0.37 -0.67 16 2 C -0.13 -0.93 5.25 -26.74 -0.14 -1.07 16 3 C -0.09 -0.86 3.52 -26.73 -0.09 -0.96 16 4 C -0.08 -0.78 0.52 -155.66 -0.08 -0.87 16 5 C -0.16 -1.38 7.40 37.16 0.28 -1.11 16 6 C -0.16 -1.34 7.47 37.15 0.28 -1.06 16 7 C 0.53 6.73 6.49 -10.99 -0.07 6.66 16 8 O -0.55 -8.71 15.46 5.55 0.09 -8.62 16 9 N -0.61 -7.52 3.00 -172.19 -0.52 -8.03 16 10 C 0.09 1.12 4.07 -3.37 -0.01 1.10 16 11 C 0.04 0.51 5.00 -3.46 -0.02 0.50 16 12 N -0.51 -7.70 4.37 -235.47 -1.03 -8.73 16 13 C 0.04 0.69 5.45 -4.97 -0.03 0.66 16 14 C 0.45 9.70 7.44 -10.98 -0.08 9.62 16 15 O -0.56 -13.97 13.91 5.54 0.08 -13.90 16 16 N -0.59 -13.50 5.09 -10.96 -0.06 -13.55 16 17 C -0.30 -8.34 10.16 -14.93 -0.15 -8.49 16 18 H 0.12 3.74 7.39 -52.49 -0.39 3.36 16 19 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 20 N -0.88 -25.19 13.96 55.50 0.77 -24.41 16 21 Si 0.88 18.93 27.74 -169.99 -4.71 14.21 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.27 -5.28 6.52 56.52 0.37 -4.91 16 25 C 0.04 0.50 5.62 -3.70 -0.02 0.48 16 26 C 0.12 1.43 6.58 -3.61 -0.02 1.41 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.45 6.69 -51.93 -0.35 0.10 16 31 H 0.06 0.44 6.64 -51.93 -0.34 0.10 16 32 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 33 H 0.07 0.70 8.11 -51.93 -0.42 0.28 16 34 H 0.07 0.51 6.93 -51.93 -0.36 0.15 16 35 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 36 H 0.07 0.70 4.15 -51.92 -0.22 0.49 16 37 H 0.08 0.66 4.68 -51.93 -0.24 0.42 16 38 H 0.06 0.53 8.12 -51.93 -0.42 0.11 16 39 H 0.07 0.49 6.83 -51.93 -0.35 0.13 16 40 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 41 H 0.11 1.08 2.88 -51.92 -0.15 0.93 16 42 H 0.03 0.39 7.61 -51.93 -0.40 -0.01 16 43 H 0.12 2.00 5.76 -51.93 -0.30 1.70 16 44 H 0.05 0.69 8.12 -51.93 -0.42 0.27 16 45 H 0.09 1.26 7.97 -51.93 -0.41 0.85 16 46 H 0.37 7.47 5.76 -40.82 -0.24 7.23 16 47 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 48 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.09 0.91 7.99 -51.93 -0.41 0.50 16 50 H 0.09 1.12 7.09 -51.93 -0.37 0.76 16 51 H 0.08 0.92 8.14 -51.92 -0.42 0.49 16 LS Contribution 380.70 15.07 5.74 5.74 Total: -1.00 -32.43 380.70 -7.88 -40.30 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -8.34 Total: 9.76 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: 0.10 Total: 7.23 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: -0.83 Total: -54.72 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: 0.16 Total: -22.52 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -4.71 Total: 14.21 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.43 -7.88 -40.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113285065.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.960 kcal (2) G-P(sol) polarization free energy of solvation -32.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds