Wall clock time and date at job start Fri Apr 10 2020 18:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.46999 * 2 1 4 4 C 1.53007 * 109.47284 * 179.97438 * 3 2 1 5 5 C 1.53007 * 109.46318 * 60.00166 * 4 3 2 6 6 C 1.52994 * 109.47266 * 300.00568 * 4 3 2 7 7 C 1.50689 * 109.47305 * 179.97438 * 4 3 2 8 8 O 1.21284 * 120.00373 * 1.29959 * 7 4 3 9 9 N 1.34784 * 120.00184 * 181.29992 * 7 4 3 10 10 C 1.47071 * 120.87850 * 354.97050 * 9 7 4 11 11 C 1.53697 * 108.28017 * 128.75525 * 10 9 7 12 12 N 1.46900 * 109.25297 * 54.08140 * 11 10 9 13 13 C 1.46900 * 110.99844 * 172.61413 * 12 11 10 14 14 C 1.50703 * 109.46778 * 294.29797 * 13 12 11 15 15 O 1.21294 * 120.00090 * 0.02562 * 14 13 12 16 16 N 1.34775 * 120.00049 * 179.97438 * 14 13 12 17 17 C 1.37099 * 120.00290 * 180.02562 * 16 14 13 18 18 H 1.07997 * 119.99901 * 0.02562 * 17 16 14 19 19 C 1.38945 * 120.00240 * 180.02562 * 17 16 14 20 20 N 1.31410 * 120.00450 * 180.02562 * 19 17 16 21 21 Si 1.86805 * 119.99876 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47174 * 90.00242 * 21 19 17 23 23 H 1.48502 * 109.47035 * 210.00121 * 21 19 17 24 24 H 1.48492 * 109.47397 * 329.99971 * 21 19 17 25 25 C 1.46901 * 111.27096 * 296.75888 * 12 11 10 26 26 C 1.47073 * 120.88143 * 175.24684 * 9 7 4 27 27 H 1.09004 * 109.46988 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47422 * 299.99824 * 1 2 3 29 29 H 1.08997 * 109.46977 * 60.00090 * 1 2 3 30 30 H 1.08997 * 109.47286 * 239.99410 * 2 1 3 31 31 H 1.09007 * 109.47039 * 119.99930 * 2 1 3 32 32 H 1.09000 * 109.47368 * 60.00081 * 3 2 1 33 33 H 1.08997 * 109.47183 * 299.99784 * 3 2 1 34 34 H 1.08999 * 109.46820 * 289.13665 * 5 4 3 35 35 H 1.08995 * 109.47535 * 49.14539 * 5 4 3 36 36 H 1.09008 * 109.46643 * 169.14339 * 5 4 3 37 37 H 1.09003 * 109.47246 * 189.08203 * 6 4 3 38 38 H 1.09001 * 109.46849 * 309.07884 * 6 4 3 39 39 H 1.08999 * 109.47638 * 69.07596 * 6 4 3 40 40 H 1.09005 * 109.63117 * 248.52479 * 10 9 7 41 41 H 1.09007 * 109.62906 * 9.10572 * 10 9 7 42 42 H 1.09003 * 109.64685 * 294.08283 * 11 10 9 43 43 H 1.08992 * 109.42643 * 173.94935 * 11 10 9 44 44 H 1.09001 * 109.47436 * 54.30024 * 13 12 11 45 45 H 1.08999 * 109.47188 * 174.30375 * 13 12 11 46 46 H 0.97005 * 119.99644 * 0.02562 * 16 14 13 47 47 H 0.97004 * 120.00590 * 180.02562 * 20 19 17 48 48 H 1.09001 * 109.49225 * 303.14944 * 25 12 11 49 49 H 1.08990 * 109.49545 * 183.06971 * 25 12 11 50 50 H 1.08996 * 109.63391 * 350.90224 * 26 9 7 51 51 H 1.09007 * 109.62942 * 111.47822 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0804 0.7211 -1.2484 6 6 4.0795 0.7214 1.2501 7 6 4.0723 2.8632 0.0000 8 8 3.2844 3.7850 0.0229 9 7 5.3971 3.1097 -0.0261 10 6 6.3711 2.0107 0.0565 11 6 7.3693 2.1632 -1.1021 12 7 7.9508 3.5117 -1.0663 13 6 9.0365 3.6430 -2.0471 14 6 10.1789 2.7415 -1.6555 15 8 10.0965 2.0566 -0.6578 16 7 11.2917 2.6955 -2.4144 17 6 12.3308 1.8750 -2.0585 18 1 12.2574 1.2652 -1.1702 19 6 13.4782 1.8280 -2.8406 20 7 14.4740 1.0411 -2.4998 21 14 13.6048 2.8822 -4.3776 22 1 14.1970 4.1983 -4.0277 23 1 14.4679 2.2007 -5.3756 24 1 12.2504 3.0857 -4.9513 25 6 6.9237 4.5407 -1.2771 26 6 5.9072 4.4851 -0.1318 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9562 -0.8900 34 1 3.8838 -0.3471 -1.1568 35 1 3.5681 1.1107 -2.1280 36 1 5.1532 0.8857 -1.3501 37 1 5.1574 0.8598 1.3353 38 1 3.5895 1.1331 2.1324 39 1 3.8548 -0.3424 1.1728 40 1 6.8999 2.0608 1.0084 41 1 5.8531 1.0553 -0.0280 42 1 6.8546 2.0141 -2.0514 43 1 8.1620 1.4224 -0.9975 44 1 8.6711 3.3588 -3.0340 45 1 9.3813 4.6768 -2.0712 46 1 11.3574 3.2430 -3.2125 47 1 15.2753 1.0086 -3.0456 48 1 6.4152 4.3584 -2.2238 49 1 7.3932 5.5240 -1.2994 50 1 5.0825 5.1664 -0.3407 51 1 6.3923 4.7686 0.8023 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113285065.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:13 Heat of formation + Delta-G solvation = -75.518746 kcal Electronic energy + Delta-G solvation = -29074.463037 eV Core-core repulsion = 25201.482321 eV Total energy + Delta-G solvation = -3872.980716 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.92936 -40.48694 -38.85416 -37.70659 -36.12048 -35.54544 -33.73035 -33.64237 -31.88781 -30.26924 -28.36570 -27.61556 -27.47454 -25.64056 -24.77768 -24.13415 -22.38396 -21.25878 -20.81599 -20.25221 -19.61327 -17.88830 -17.62825 -17.18527 -16.84029 -16.56501 -16.47958 -16.10213 -15.96320 -15.66537 -15.42484 -15.24318 -15.01171 -14.88714 -14.58977 -14.39297 -14.10023 -13.83819 -13.62763 -13.32327 -13.29873 -13.15826 -13.00410 -12.79685 -12.76080 -12.58055 -12.39216 -12.28603 -12.19313 -12.08792 -11.99741 -11.95540 -11.80716 -11.44072 -11.35518 -11.35200 -10.56721 -10.39471 -10.20876 -9.78336 -9.22284 -8.38752 -5.98829 1.31389 1.36737 1.45168 1.55397 1.90799 1.98543 2.24399 2.59312 3.16065 3.21061 3.33722 3.66599 3.82716 3.86628 3.95087 4.06905 4.13524 4.17715 4.24279 4.27474 4.30757 4.32936 4.45957 4.46678 4.54360 4.58189 4.62639 4.71674 4.78336 4.80261 4.81138 4.90721 4.93268 4.93955 4.99658 5.04561 5.10976 5.21152 5.22205 5.33529 5.43298 5.44618 5.52329 5.54879 5.85253 6.00129 6.11095 6.37325 6.62213 6.91523 7.08949 7.43055 7.99469 8.78580 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.023442 B = 0.002513 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.168555 B =11139.090594 C =11645.173491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.087 4.087 4 C -0.078 4.078 5 C -0.156 4.156 6 C -0.158 4.158 7 C 0.520 3.480 8 O -0.583 6.583 9 N -0.608 5.608 10 C 0.103 3.897 11 C 0.039 3.961 12 N -0.534 5.534 13 C 0.055 3.945 14 C 0.453 3.547 15 O -0.600 6.600 16 N -0.593 5.593 17 C -0.322 4.322 18 H 0.058 0.942 19 C -0.016 4.016 20 N -0.935 5.935 21 Si 0.962 3.038 22 H -0.259 1.259 23 H -0.278 1.278 24 H -0.232 1.232 25 C 0.049 3.951 26 C 0.116 3.884 27 H 0.064 0.936 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.093 0.907 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.093 0.907 40 H 0.070 0.930 41 H 0.131 0.869 42 H 0.041 0.959 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.122 0.878 46 H 0.388 0.612 47 H 0.278 0.722 48 H 0.042 0.958 49 H 0.108 0.892 50 H 0.092 0.908 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.228 2.615 -0.885 24.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.125 4.125 4 C -0.081 4.081 5 C -0.213 4.213 6 C -0.215 4.215 7 C 0.310 3.690 8 O -0.463 6.463 9 N -0.340 5.340 10 C -0.019 4.019 11 C -0.089 4.089 12 N -0.260 5.260 13 C -0.076 4.076 14 C 0.241 3.759 15 O -0.484 6.484 16 N -0.235 5.235 17 C -0.452 4.452 18 H 0.077 0.923 19 C -0.215 4.215 20 N -0.576 5.576 21 Si 0.783 3.217 22 H -0.183 1.183 23 H -0.203 1.203 24 H -0.155 1.155 25 C -0.079 4.079 26 C -0.007 4.007 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.112 0.888 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.112 0.888 40 H 0.088 0.912 41 H 0.148 0.852 42 H 0.059 0.941 43 H 0.100 0.900 44 H 0.094 0.906 45 H 0.140 0.860 46 H 0.224 0.776 47 H 0.087 0.913 48 H 0.060 0.940 49 H 0.126 0.874 50 H 0.110 0.890 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -24.301 2.637 0.231 24.444 hybrid contribution 0.602 0.387 -1.365 1.541 sum -23.699 3.024 -1.134 23.918 Atomic orbital electron populations 1.21772 0.95643 1.02068 1.01570 1.21630 0.96045 0.95149 1.03159 1.21382 0.91383 0.97917 1.01789 1.20803 0.97664 0.90530 0.99099 1.22274 1.01787 1.01973 0.95218 1.22308 1.02105 1.01957 0.95122 1.21192 0.81329 0.92190 0.74254 1.90636 1.55720 1.47826 1.52127 1.48244 1.05471 1.08260 1.72053 1.22571 0.89337 0.91297 0.98727 1.22669 0.97393 0.91523 0.97320 1.61454 1.10213 1.04023 1.50281 1.21822 0.90336 1.00836 0.94638 1.20789 0.84479 0.85987 0.84635 1.90511 1.81755 1.47337 1.28821 1.42056 1.15225 1.40629 1.25594 1.18982 0.94654 1.20844 1.10681 0.92344 1.26075 0.94270 0.98726 1.02396 1.69799 1.06925 1.39628 1.41204 0.85400 0.80375 0.78589 0.77381 1.18350 1.20276 1.15501 1.22523 0.91938 0.96532 0.96912 1.21706 0.96615 0.83261 0.99130 0.91697 0.93121 0.93139 0.90793 0.90726 0.92845 0.92888 0.88819 0.92328 0.91289 0.91019 0.92346 0.88777 0.91201 0.85170 0.94060 0.90016 0.90629 0.86002 0.77646 0.91262 0.93986 0.87400 0.89000 0.90916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.91 71.98 0.71 -1.14 16 2 C -0.12 -1.54 5.25 30.59 0.16 -1.38 16 3 C -0.09 -1.55 3.52 30.59 0.11 -1.44 16 4 C -0.08 -1.41 0.52 -52.93 -0.03 -1.44 16 5 C -0.16 -2.37 7.40 71.98 0.53 -1.84 16 6 C -0.16 -2.39 7.47 71.98 0.54 -1.85 16 7 C 0.52 12.95 6.49 87.65 0.57 13.52 16 8 O -0.58 -18.42 15.46 -3.04 -0.05 -18.47 16 9 N -0.61 -14.39 3.00 -817.07 -2.45 -16.84 16 10 C 0.10 2.38 4.07 86.51 0.35 2.73 16 11 C 0.04 1.09 5.00 86.54 0.43 1.52 16 12 N -0.53 -14.97 4.37 -898.89 -3.93 -18.90 16 13 C 0.05 1.57 5.45 85.56 0.47 2.03 16 14 C 0.45 19.25 7.44 87.66 0.65 19.90 16 15 O -0.60 -30.92 13.91 -3.07 -0.04 -30.96 16 16 N -0.59 -26.75 5.09 -306.99 -1.56 -28.31 16 17 C -0.32 -18.25 10.16 84.04 0.85 -17.40 16 18 H 0.06 3.94 7.39 -2.91 -0.02 3.92 16 19 C -0.02 -0.88 5.50 84.93 0.47 -0.41 16 20 N -0.93 -55.38 13.96 21.66 0.30 -55.08 16 21 Si 0.96 37.91 27.74 68.60 1.90 39.81 16 22 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 23 H -0.28 -10.95 7.11 99.48 0.71 -10.25 16 24 H -0.23 -7.62 6.52 99.48 0.65 -6.97 16 25 C 0.05 1.05 5.62 86.38 0.49 1.53 16 26 C 0.12 2.65 6.58 86.35 0.57 3.22 16 27 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.07 0.81 6.69 -2.39 -0.02 0.80 16 31 H 0.07 0.81 6.64 -2.38 -0.02 0.80 16 32 H 0.05 1.10 8.09 -2.39 -0.02 1.08 16 33 H 0.05 1.09 8.11 -2.39 -0.02 1.07 16 34 H 0.09 1.03 6.93 -2.39 -0.02 1.02 16 35 H 0.06 0.94 8.10 -2.39 -0.02 0.92 16 36 H 0.07 1.15 4.15 -2.38 -0.01 1.14 16 37 H 0.07 1.15 4.68 -2.39 -0.01 1.14 16 38 H 0.06 0.93 8.12 -2.39 -0.02 0.92 16 39 H 0.09 1.01 6.83 -2.39 -0.02 1.00 16 40 H 0.07 1.81 8.10 -2.38 -0.02 1.79 16 41 H 0.13 2.43 2.88 -2.38 -0.01 2.42 16 42 H 0.04 1.02 7.61 -2.39 -0.02 1.01 16 43 H 0.08 2.86 5.76 -2.39 -0.01 2.85 16 44 H 0.08 1.83 8.12 -2.39 -0.02 1.81 16 45 H 0.12 2.82 7.97 -2.39 -0.02 2.81 16 46 H 0.39 14.52 5.76 -92.70 -0.53 13.98 16 47 H 0.28 15.10 8.31 -92.71 -0.77 14.33 16 48 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 49 H 0.11 1.87 7.99 -2.39 -0.02 1.85 16 50 H 0.09 2.14 7.09 -2.39 -0.02 2.12 16 51 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 Total: -1.00 -75.69 380.70 1.39 -74.30 By element: Atomic # 1 Polarization: 36.54 SS G_CDS: 0.34 Total: 36.88 kcal Atomic # 6 Polarization: 10.69 SS G_CDS: 6.87 Total: 17.56 kcal Atomic # 7 Polarization: -111.49 SS G_CDS: -7.64 Total: -119.13 kcal Atomic # 8 Polarization: -49.34 SS G_CDS: -0.09 Total: -49.43 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 1.90 Total: 39.81 kcal Total: -75.69 1.39 -74.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113285065.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.221 kcal (2) G-P(sol) polarization free energy of solvation -75.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds