Wall clock time and date at job start Fri Apr 10 2020 18:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46817 * 2 1 4 4 C 1.52996 * 109.46972 * 240.00267 * 2 1 3 5 5 C 1.52992 * 109.47106 * 120.00244 * 2 1 3 6 6 C 1.52997 * 109.47482 * 60.00162 * 5 2 1 7 7 C 1.50701 * 109.47212 * 179.97438 * 6 5 2 8 8 O 1.21280 * 119.99781 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99795 * 179.97438 * 7 6 5 10 10 C 1.47074 * 120.88261 * 359.72571 * 9 7 6 11 11 C 1.53695 * 108.27576 * 128.74910 * 10 9 7 12 12 N 1.46904 * 109.25420 * 54.08473 * 11 10 9 13 13 C 1.46897 * 110.99901 * 172.60509 * 12 11 10 14 14 C 1.50703 * 109.47428 * 294.29982 * 13 12 11 15 15 O 1.21299 * 119.99823 * 0.02562 * 14 13 12 16 16 N 1.34779 * 120.00417 * 179.97438 * 14 13 12 17 17 C 1.37097 * 119.99982 * 180.02562 * 16 14 13 18 18 H 1.07997 * 119.99976 * 359.97438 * 17 16 14 19 19 C 1.38953 * 119.99638 * 180.02562 * 17 16 14 20 20 N 1.31406 * 119.99829 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99533 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47113 * 89.99976 * 21 19 17 23 23 H 1.48507 * 109.46646 * 209.99849 * 21 19 17 24 24 H 1.48497 * 109.47312 * 329.99791 * 21 19 17 25 25 C 1.46897 * 111.26792 * 296.75440 * 12 11 10 26 26 C 1.47075 * 120.87669 * 180.02562 * 9 7 6 27 27 H 1.09002 * 109.47596 * 299.99825 * 1 2 3 28 28 H 1.08996 * 109.47407 * 60.00219 * 1 2 3 29 29 H 1.09000 * 109.46986 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47289 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47261 * 300.00059 * 3 2 1 32 32 H 1.09002 * 109.47153 * 60.00231 * 3 2 1 33 33 H 1.09004 * 109.47552 * 299.99695 * 4 2 1 34 34 H 1.09004 * 109.47298 * 59.99824 * 4 2 1 35 35 H 1.09001 * 109.46993 * 179.97438 * 4 2 1 36 36 H 1.09002 * 109.47103 * 299.99915 * 5 2 1 37 37 H 1.08998 * 109.46862 * 180.02562 * 5 2 1 38 38 H 1.09002 * 109.47153 * 59.99783 * 6 5 2 39 39 H 1.09001 * 109.46832 * 299.99974 * 6 5 2 40 40 H 1.08994 * 109.63016 * 248.52290 * 10 9 7 41 41 H 1.09001 * 109.62513 * 9.10199 * 10 9 7 42 42 H 1.08997 * 109.65385 * 294.08176 * 11 10 9 43 43 H 1.08999 * 109.42153 * 173.94686 * 11 10 9 44 44 H 1.08994 * 109.47420 * 54.30050 * 13 12 11 45 45 H 1.08997 * 109.47407 * 174.29955 * 13 12 11 46 46 H 0.97000 * 119.99497 * 0.02562 * 16 14 13 47 47 H 0.97005 * 119.99850 * 180.02562 * 20 19 17 48 48 H 1.09001 * 109.49120 * 303.14081 * 25 12 11 49 49 H 1.09003 * 109.48945 * 183.06528 * 25 12 11 50 50 H 1.09003 * 109.63301 * 350.89825 * 26 9 7 51 51 H 1.09003 * 109.62726 * 111.48107 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2491 6 6 1.5301 -2.1638 1.2491 7 6 2.0330 -2.8744 2.4793 8 8 2.7301 -2.2849 3.2776 9 7 1.7071 -4.1646 2.6927 10 6 0.8570 -4.8959 1.7410 11 6 1.5629 -6.2118 1.3769 12 7 1.8879 -6.9440 2.6082 13 6 2.4045 -8.2847 2.3026 14 6 1.3167 -9.1087 1.6634 15 8 0.2189 -8.6263 1.4799 16 7 1.5636 -10.3813 1.2945 17 6 0.5741 -11.1307 0.7125 18 1 -0.4035 -10.7014 0.5499 19 6 0.8286 -12.4428 0.3327 20 7 2.0180 -12.9652 0.5310 21 14 -0.5199 -13.4640 -0.4597 22 1 -0.4713 -13.2901 -1.9337 23 1 -0.3184 -14.8964 -0.1233 24 1 -1.8421 -13.0176 0.0481 25 6 2.8357 -6.1918 3.4411 26 6 2.1867 -4.8767 3.8869 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 -1.7489 -1.2493 34 1 1.6766 -0.2073 -2.1393 35 1 3.1300 -0.7208 -1.2495 36 1 1.6767 -0.2075 2.1392 37 1 3.1300 -0.7208 1.2493 38 1 1.8934 -2.6776 0.3591 39 1 0.4401 -2.1638 1.2492 40 1 -0.1078 -5.1094 2.2009 41 1 0.7128 -4.2955 0.8428 42 1 2.4802 -5.9963 0.8290 43 1 0.9023 -6.8179 0.7569 44 1 3.2477 -8.2016 1.6170 45 1 2.7316 -8.7668 3.2238 46 1 2.4416 -10.7669 1.4409 47 1 2.1958 -13.8811 0.2655 48 1 3.7353 -5.9766 2.8644 49 1 3.0982 -6.7834 4.3181 50 1 2.9220 -4.2636 4.4082 51 1 1.3469 -5.0884 4.5489 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113447712.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:20 Heat of formation + Delta-G solvation = -80.302737 kcal Electronic energy + Delta-G solvation = -28282.114411 eV Core-core repulsion = 24408.926246 eV Total energy + Delta-G solvation = -3873.188166 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.35840 -38.84534 -37.99043 -37.12870 -34.51275 -33.80188 -31.90262 -31.29497 -30.63449 -28.79361 -27.57228 -27.56204 -25.95346 -24.74984 -23.81767 -23.30441 -21.05829 -19.31517 -18.95675 -18.73919 -17.91490 -17.20370 -16.22984 -15.96746 -15.81301 -15.08739 -14.95253 -14.82767 -14.71159 -14.48066 -14.31680 -14.15196 -13.92040 -13.64450 -13.55776 -13.30761 -12.81657 -12.72623 -12.45792 -12.13807 -12.05905 -11.94967 -11.92142 -11.62921 -11.55580 -11.38572 -11.26807 -11.18411 -11.14233 -10.86647 -10.82475 -10.76343 -10.75120 -10.42006 -10.25403 -9.77253 -9.51309 -8.85629 -8.39350 -8.02228 -7.92126 -6.45333 -3.86286 2.58831 2.92876 3.14852 3.24092 3.29646 3.84768 3.92082 4.19893 4.30185 4.45951 4.53980 4.68480 4.84338 4.94101 4.99247 5.03815 5.08954 5.20019 5.22397 5.25593 5.32193 5.35158 5.35861 5.37833 5.43275 5.50143 5.53970 5.63891 5.64366 5.72066 5.75379 5.76777 5.78583 5.84695 5.87600 5.91149 6.00237 6.11741 6.13488 6.15800 6.17493 6.22216 6.48588 7.12219 7.28326 7.40846 7.51640 8.02282 8.12673 8.57320 9.14068 9.50248 10.01356 10.72260 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.019058 B = 0.002276 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.841795 B =12298.185525 C =13251.705795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.072 4.072 3 C -0.140 4.140 4 C -0.146 4.146 5 C -0.091 4.091 6 C -0.144 4.144 7 C 0.514 3.486 8 O -0.551 6.551 9 N -0.614 5.614 10 C 0.115 3.885 11 C 0.039 3.961 12 N -0.515 5.515 13 C 0.046 3.954 14 C 0.443 3.557 15 O -0.579 6.579 16 N -0.563 5.563 17 C -0.299 4.299 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.901 5.901 21 Si 0.930 3.070 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.269 1.269 25 C 0.041 3.959 26 C 0.118 3.882 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.027 0.973 43 H 0.116 0.884 44 H 0.047 0.953 45 H 0.090 0.910 46 H 0.392 0.608 47 H 0.272 0.728 48 H 0.034 0.966 49 H 0.086 0.914 50 H 0.092 0.908 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.008 21.760 -0.103 21.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.072 4.072 3 C -0.197 4.197 4 C -0.203 4.203 5 C -0.129 4.129 6 C -0.184 4.184 7 C 0.302 3.698 8 O -0.429 6.429 9 N -0.348 5.348 10 C -0.008 4.008 11 C -0.090 4.090 12 N -0.239 5.239 13 C -0.085 4.085 14 C 0.228 3.772 15 O -0.463 6.463 16 N -0.199 5.199 17 C -0.429 4.429 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.542 5.542 21 Si 0.757 3.243 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.194 1.194 25 C -0.088 4.088 26 C -0.005 4.005 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.045 0.955 43 H 0.134 0.866 44 H 0.065 0.935 45 H 0.108 0.892 46 H 0.225 0.775 47 H 0.082 0.918 48 H 0.052 0.948 49 H 0.104 0.896 50 H 0.111 0.889 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.274 22.137 0.420 22.178 hybrid contribution 0.713 -1.012 -0.783 1.465 sum 1.987 21.125 -0.364 21.222 Atomic orbital electron populations 1.21954 0.94573 1.02003 1.01724 1.20589 0.95739 0.95575 0.95314 1.21848 1.01026 0.95242 1.01633 1.21958 1.01086 1.00420 0.96829 1.21382 1.01223 0.92939 0.97313 1.21859 1.02789 0.97135 0.96598 1.20776 0.79963 0.81283 0.87734 1.90663 1.38794 1.65726 1.47737 1.48304 1.51017 1.11104 1.24325 1.22003 0.94311 0.92156 0.92361 1.22729 0.99768 0.94539 0.91949 1.61498 1.42477 1.01552 1.18417 1.21850 0.96092 0.89762 1.00766 1.19712 0.89366 0.83253 0.84826 1.90473 1.24739 1.71450 1.59671 1.41879 1.14333 1.10284 1.53428 1.19689 0.94357 0.93612 1.35194 0.87869 1.25274 0.97468 0.97286 0.97947 1.69611 1.20935 1.15945 1.47723 0.85857 0.80727 0.78530 0.79169 1.20423 1.20929 1.19388 1.22513 0.93469 0.94621 0.98202 1.21683 0.99812 0.91764 0.87214 0.92622 0.92721 0.92283 0.92654 0.92720 0.92650 0.92287 0.92703 0.92626 0.91265 0.91299 0.88709 0.88651 0.89986 0.89707 0.95490 0.86641 0.93470 0.89192 0.77481 0.91842 0.94775 0.89554 0.88950 0.90690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 8.12 37.16 0.30 -0.69 16 2 C -0.07 -0.53 0.80 -154.51 -0.12 -0.65 16 3 C -0.14 -0.96 8.47 37.16 0.31 -0.65 16 4 C -0.15 -1.03 8.12 37.16 0.30 -0.73 16 5 C -0.09 -0.83 3.56 -26.74 -0.10 -0.92 16 6 C -0.14 -1.34 3.36 -27.88 -0.09 -1.43 16 7 C 0.51 6.55 7.71 -10.98 -0.08 6.47 16 8 O -0.55 -8.74 15.43 5.56 0.09 -8.66 16 9 N -0.61 -7.75 3.00 -172.16 -0.52 -8.27 16 10 C 0.11 1.39 6.53 -3.37 -0.02 1.37 16 11 C 0.04 0.58 5.27 -3.46 -0.02 0.56 16 12 N -0.51 -8.16 4.37 -235.44 -1.03 -9.19 16 13 C 0.05 0.80 5.45 -4.98 -0.03 0.77 16 14 C 0.44 9.98 7.44 -10.98 -0.08 9.90 16 15 O -0.58 -14.70 13.91 5.54 0.08 -14.62 16 16 N -0.56 -13.81 5.29 -10.96 -0.06 -13.87 16 17 C -0.30 -8.10 9.68 -14.93 -0.14 -8.24 16 18 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16 19 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 20 N -0.90 -24.08 13.05 55.50 0.72 -23.36 16 21 Si 0.93 20.62 29.55 -169.99 -5.02 15.60 16 22 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 25 C 0.04 0.53 5.62 -3.68 -0.02 0.51 16 26 C 0.12 1.49 6.60 -3.58 -0.02 1.46 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.39 6.43 -51.93 -0.33 0.06 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.41 6.43 -51.93 -0.33 0.07 16 34 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 37 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 38 H 0.09 0.79 5.96 -51.93 -0.31 0.48 16 39 H 0.10 0.76 6.28 -51.93 -0.33 0.44 16 40 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.08 0.81 6.02 -51.93 -0.31 0.49 16 42 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.12 2.07 5.76 -51.93 -0.30 1.77 16 44 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 45 H 0.09 1.40 7.97 -51.93 -0.41 0.98 16 46 H 0.39 9.25 7.90 -40.82 -0.32 8.93 16 47 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 48 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.09 0.99 7.99 -51.93 -0.41 0.58 16 50 H 0.09 1.17 7.06 -51.93 -0.37 0.80 16 51 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 395.31 15.07 5.96 5.96 Total: -1.00 -31.33 395.31 -8.55 -39.88 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -8.86 Total: 8.31 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: 0.09 Total: 8.21 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: -0.88 Total: -54.68 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: 0.16 Total: -23.27 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.33 -8.55 -39.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113447712.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.425 kcal (2) G-P(sol) polarization free energy of solvation -31.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds