Wall clock time and date at job start Fri Apr 10 2020 18:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46817 * 2 1 4 4 C 1.52996 * 109.46972 * 240.00267 * 2 1 3 5 5 C 1.52992 * 109.47106 * 120.00244 * 2 1 3 6 6 C 1.52997 * 109.47482 * 60.00162 * 5 2 1 7 7 C 1.50701 * 109.47212 * 179.97438 * 6 5 2 8 8 O 1.21280 * 119.99781 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99795 * 179.97438 * 7 6 5 10 10 C 1.47074 * 120.88261 * 359.72571 * 9 7 6 11 11 C 1.53695 * 108.27576 * 128.74910 * 10 9 7 12 12 N 1.46904 * 109.25420 * 54.08473 * 11 10 9 13 13 C 1.46897 * 110.99901 * 172.60509 * 12 11 10 14 14 C 1.50703 * 109.47428 * 294.29982 * 13 12 11 15 15 O 1.21299 * 119.99823 * 0.02562 * 14 13 12 16 16 N 1.34779 * 120.00417 * 179.97438 * 14 13 12 17 17 C 1.37097 * 119.99982 * 180.02562 * 16 14 13 18 18 H 1.07997 * 119.99976 * 359.97438 * 17 16 14 19 19 C 1.38953 * 119.99638 * 180.02562 * 17 16 14 20 20 N 1.31406 * 119.99829 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99533 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47113 * 89.99976 * 21 19 17 23 23 H 1.48507 * 109.46646 * 209.99849 * 21 19 17 24 24 H 1.48497 * 109.47312 * 329.99791 * 21 19 17 25 25 C 1.46897 * 111.26792 * 296.75440 * 12 11 10 26 26 C 1.47075 * 120.87669 * 180.02562 * 9 7 6 27 27 H 1.09002 * 109.47596 * 299.99825 * 1 2 3 28 28 H 1.08996 * 109.47407 * 60.00219 * 1 2 3 29 29 H 1.09000 * 109.46986 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47289 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47261 * 300.00059 * 3 2 1 32 32 H 1.09002 * 109.47153 * 60.00231 * 3 2 1 33 33 H 1.09004 * 109.47552 * 299.99695 * 4 2 1 34 34 H 1.09004 * 109.47298 * 59.99824 * 4 2 1 35 35 H 1.09001 * 109.46993 * 179.97438 * 4 2 1 36 36 H 1.09002 * 109.47103 * 299.99915 * 5 2 1 37 37 H 1.08998 * 109.46862 * 180.02562 * 5 2 1 38 38 H 1.09002 * 109.47153 * 59.99783 * 6 5 2 39 39 H 1.09001 * 109.46832 * 299.99974 * 6 5 2 40 40 H 1.08994 * 109.63016 * 248.52290 * 10 9 7 41 41 H 1.09001 * 109.62513 * 9.10199 * 10 9 7 42 42 H 1.08997 * 109.65385 * 294.08176 * 11 10 9 43 43 H 1.08999 * 109.42153 * 173.94686 * 11 10 9 44 44 H 1.08994 * 109.47420 * 54.30050 * 13 12 11 45 45 H 1.08997 * 109.47407 * 174.29955 * 13 12 11 46 46 H 0.97000 * 119.99497 * 0.02562 * 16 14 13 47 47 H 0.97005 * 119.99850 * 180.02562 * 20 19 17 48 48 H 1.09001 * 109.49120 * 303.14081 * 25 12 11 49 49 H 1.09003 * 109.48945 * 183.06528 * 25 12 11 50 50 H 1.09003 * 109.63301 * 350.89825 * 26 9 7 51 51 H 1.09003 * 109.62726 * 111.48107 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2491 6 6 1.5301 -2.1638 1.2491 7 6 2.0330 -2.8744 2.4793 8 8 2.7301 -2.2849 3.2776 9 7 1.7071 -4.1646 2.6927 10 6 0.8570 -4.8959 1.7410 11 6 1.5629 -6.2118 1.3769 12 7 1.8879 -6.9440 2.6082 13 6 2.4045 -8.2847 2.3026 14 6 1.3167 -9.1087 1.6634 15 8 0.2189 -8.6263 1.4799 16 7 1.5636 -10.3813 1.2945 17 6 0.5741 -11.1307 0.7125 18 1 -0.4035 -10.7014 0.5499 19 6 0.8286 -12.4428 0.3327 20 7 2.0180 -12.9652 0.5310 21 14 -0.5199 -13.4640 -0.4597 22 1 -0.4713 -13.2901 -1.9337 23 1 -0.3184 -14.8964 -0.1233 24 1 -1.8421 -13.0176 0.0481 25 6 2.8357 -6.1918 3.4411 26 6 2.1867 -4.8767 3.8869 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 -1.7489 -1.2493 34 1 1.6766 -0.2073 -2.1393 35 1 3.1300 -0.7208 -1.2495 36 1 1.6767 -0.2075 2.1392 37 1 3.1300 -0.7208 1.2493 38 1 1.8934 -2.6776 0.3591 39 1 0.4401 -2.1638 1.2492 40 1 -0.1078 -5.1094 2.2009 41 1 0.7128 -4.2955 0.8428 42 1 2.4802 -5.9963 0.8290 43 1 0.9023 -6.8179 0.7569 44 1 3.2477 -8.2016 1.6170 45 1 2.7316 -8.7668 3.2238 46 1 2.4416 -10.7669 1.4409 47 1 2.1958 -13.8811 0.2655 48 1 3.7353 -5.9766 2.8644 49 1 3.0982 -6.7834 4.3181 50 1 2.9220 -4.2636 4.4082 51 1 1.3469 -5.0884 4.5489 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113447712.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:19 Heat of formation + Delta-G solvation = -100.700654 kcal Electronic energy + Delta-G solvation = -28282.998931 eV Core-core repulsion = 24408.926246 eV Total energy + Delta-G solvation = -3874.072686 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.39970 -40.31451 -38.98167 -38.27014 -36.04443 -35.39853 -33.25061 -32.81025 -31.58495 -30.09576 -28.10939 -28.09852 -27.44288 -25.95542 -25.13771 -24.36095 -22.11796 -21.04805 -19.96930 -19.78785 -19.46688 -18.18438 -17.78387 -16.99291 -16.84718 -16.60355 -16.35832 -16.11030 -15.66982 -15.53287 -15.33783 -15.23721 -15.20305 -14.97812 -14.59422 -14.15599 -14.06204 -13.75162 -13.53090 -13.35467 -13.20154 -12.97052 -12.78064 -12.71826 -12.66571 -12.51396 -12.40481 -12.31637 -12.25595 -12.15400 -12.09317 -12.00573 -11.47023 -11.42488 -11.39476 -11.38184 -10.79392 -10.32655 -9.98496 -9.75672 -9.22094 -8.44399 -5.92523 1.39365 1.43510 1.55823 1.59528 1.94528 2.07631 2.29664 2.72969 3.22759 3.37763 3.46221 3.81089 3.87178 3.92654 3.98119 4.05291 4.16238 4.21600 4.27265 4.29207 4.37147 4.45441 4.48089 4.50801 4.59092 4.65917 4.69381 4.73386 4.81446 4.82701 4.87566 4.94440 4.96205 5.04863 5.06223 5.09858 5.14447 5.19003 5.27482 5.41224 5.43434 5.45668 5.55450 5.56325 5.82355 6.05291 6.13760 6.40097 6.62660 7.12691 7.15358 7.59226 8.14113 8.72943 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.019058 B = 0.002276 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.841795 B =12298.185525 C =13251.705795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.068 4.068 3 C -0.141 4.141 4 C -0.146 4.146 5 C -0.085 4.085 6 C -0.139 4.139 7 C 0.511 3.489 8 O -0.585 6.585 9 N -0.614 5.614 10 C 0.123 3.877 11 C 0.040 3.960 12 N -0.531 5.531 13 C 0.058 3.942 14 C 0.444 3.556 15 O -0.609 6.609 16 N -0.575 5.575 17 C -0.328 4.328 18 H 0.081 0.919 19 C -0.015 4.015 20 N -0.922 5.922 21 Si 0.992 3.008 22 H -0.271 1.271 23 H -0.274 1.274 24 H -0.272 1.272 25 C 0.047 3.953 26 C 0.118 3.882 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.051 0.949 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.074 0.926 41 H 0.115 0.885 42 H 0.035 0.965 43 H 0.084 0.916 44 H 0.064 0.936 45 H 0.111 0.889 46 H 0.395 0.605 47 H 0.276 0.724 48 H 0.037 0.963 49 H 0.103 0.897 50 H 0.092 0.908 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.938 22.311 -0.709 22.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.068 4.068 3 C -0.198 4.198 4 C -0.203 4.203 5 C -0.123 4.123 6 C -0.178 4.178 7 C 0.301 3.699 8 O -0.466 6.466 9 N -0.347 5.347 10 C 0.000 4.000 11 C -0.088 4.088 12 N -0.256 5.256 13 C -0.073 4.073 14 C 0.231 3.769 15 O -0.495 6.495 16 N -0.213 5.213 17 C -0.457 4.457 18 H 0.099 0.901 19 C -0.215 4.215 20 N -0.563 5.563 21 Si 0.816 3.184 22 H -0.197 1.197 23 H -0.199 1.199 24 H -0.197 1.197 25 C -0.081 4.081 26 C -0.005 4.005 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.092 0.908 41 H 0.133 0.867 42 H 0.053 0.947 43 H 0.102 0.898 44 H 0.082 0.918 45 H 0.129 0.871 46 H 0.229 0.771 47 H 0.086 0.914 48 H 0.056 0.944 49 H 0.121 0.879 50 H 0.110 0.890 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.218 22.695 -0.184 22.729 hybrid contribution 0.746 -1.110 -0.552 1.447 sum 1.964 21.585 -0.736 21.687 Atomic orbital electron populations 1.21958 0.93921 1.02368 1.02009 1.20559 0.96199 0.95574 0.94518 1.21854 1.00850 0.95098 1.01993 1.21964 1.00878 1.00645 0.96834 1.21315 1.00253 0.93015 0.97746 1.21908 1.03760 0.96802 0.95313 1.21358 0.79204 0.81079 0.88232 1.90649 1.40405 1.66386 1.49168 1.48377 1.50859 1.11240 1.24256 1.21964 0.93286 0.91318 0.93412 1.22636 0.99605 0.95102 0.91485 1.61482 1.43675 1.01382 1.19100 1.21717 0.94177 0.89885 1.01490 1.20669 0.90160 0.82784 0.83296 1.90455 1.26640 1.72003 1.60439 1.41951 1.14050 1.11051 1.54221 1.19650 0.94372 0.94695 1.37029 0.90055 1.26032 0.99623 0.97803 0.98034 1.69675 1.22126 1.16398 1.48110 0.84940 0.77856 0.77201 0.78433 1.19653 1.19881 1.19687 1.22532 0.92791 0.94527 0.98250 1.21672 0.99834 0.91609 0.87395 0.92838 0.91995 0.91868 0.92987 0.91810 0.92847 0.91946 0.91971 0.93022 0.92574 0.92784 0.87194 0.86872 0.90755 0.86700 0.94730 0.89817 0.91767 0.87123 0.77135 0.91429 0.94444 0.87866 0.88988 0.90693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.12 71.98 0.58 -1.10 16 2 C -0.07 -0.90 0.80 -52.19 -0.04 -0.94 16 3 C -0.14 -1.77 8.47 71.98 0.61 -1.16 16 4 C -0.15 -1.77 8.12 71.98 0.58 -1.19 16 5 C -0.09 -1.47 3.56 30.59 0.11 -1.36 16 6 C -0.14 -2.31 3.36 29.85 0.10 -2.21 16 7 C 0.51 12.37 7.71 87.66 0.68 13.04 16 8 O -0.59 -18.28 15.43 -3.03 -0.05 -18.32 16 9 N -0.61 -14.58 3.00 -816.99 -2.45 -17.03 16 10 C 0.12 2.79 6.53 86.50 0.57 3.36 16 11 C 0.04 1.16 5.27 86.54 0.46 1.62 16 12 N -0.53 -16.12 4.37 -898.81 -3.93 -20.04 16 13 C 0.06 1.92 5.45 85.56 0.47 2.38 16 14 C 0.44 20.05 7.44 87.66 0.65 20.70 16 15 O -0.61 -31.45 13.91 -3.09 -0.04 -31.49 16 16 N -0.58 -28.54 5.29 -306.97 -1.62 -30.17 16 17 C -0.33 -18.06 9.68 84.04 0.81 -17.25 16 18 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 19 C -0.02 -0.81 5.50 84.93 0.47 -0.34 16 20 N -0.92 -49.05 13.05 21.66 0.28 -48.77 16 21 Si 0.99 42.11 29.55 68.60 2.03 44.13 16 22 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 23 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 24 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 25 C 0.05 1.13 5.62 86.40 0.49 1.61 16 26 C 0.12 2.81 6.60 86.36 0.57 3.38 16 27 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 0.68 6.43 -2.39 -0.02 0.66 16 30 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 32 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.06 0.71 6.43 -2.39 -0.02 0.69 16 34 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 35 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.06 1.11 8.10 -2.39 -0.02 1.09 16 37 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 38 H 0.11 1.54 5.96 -2.39 -0.01 1.52 16 39 H 0.11 1.51 6.28 -2.39 -0.01 1.50 16 40 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.11 1.89 6.02 -2.39 -0.01 1.87 16 42 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.08 3.00 5.76 -2.39 -0.01 2.99 16 44 H 0.06 1.92 8.12 -2.39 -0.02 1.90 16 45 H 0.11 3.20 7.97 -2.39 -0.02 3.18 16 46 H 0.40 18.76 7.90 -92.71 -0.73 18.03 16 47 H 0.28 13.82 8.31 -92.70 -0.77 13.05 16 48 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 49 H 0.10 2.12 7.99 -2.39 -0.02 2.10 16 50 H 0.09 2.23 7.06 -2.39 -0.02 2.22 16 51 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -67.84 395.31 1.50 -66.34 By element: Atomic # 1 Polarization: 34.61 SS G_CDS: 0.18 Total: 34.80 kcal Atomic # 6 Polarization: 13.46 SS G_CDS: 7.10 Total: 20.56 kcal Atomic # 7 Polarization: -108.29 SS G_CDS: -7.72 Total: -116.01 kcal Atomic # 8 Polarization: -49.73 SS G_CDS: -0.09 Total: -49.82 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.13 kcal Total: -67.84 1.50 -66.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113447712.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.361 kcal (2) G-P(sol) polarization free energy of solvation -67.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds