Wall clock time and date at job start Fri Apr 10 2020 18:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47042 * 2 1 4 4 C 1.52997 * 109.46988 * 65.00303 * 3 2 1 5 5 C 1.52999 * 109.47307 * 185.29947 * 4 3 2 6 6 C 1.52999 * 109.47097 * 184.99932 * 3 2 1 7 7 C 1.50709 * 109.47152 * 67.19960 * 6 3 2 8 8 O 1.21280 * 119.99400 * 356.39999 * 7 6 3 9 9 N 1.34774 * 119.99674 * 176.39984 * 7 6 3 10 10 C 1.47071 * 120.88559 * 359.72035 * 9 7 6 11 11 C 1.53696 * 108.27800 * 128.75553 * 10 9 7 12 12 N 1.46901 * 109.25546 * 54.08232 * 11 10 9 13 13 C 1.46897 * 110.99970 * 172.60918 * 12 11 10 14 14 C 1.50698 * 109.47244 * 294.30122 * 13 12 11 15 15 O 1.21289 * 119.99899 * 359.97438 * 14 13 12 16 16 N 1.34781 * 120.00018 * 180.02562 * 14 13 12 17 17 C 1.37094 * 119.99852 * 180.02562 * 16 14 13 18 18 H 1.08006 * 120.00391 * 359.97438 * 17 16 14 19 19 C 1.38952 * 120.00131 * 180.02562 * 17 16 14 20 20 N 1.31411 * 119.99817 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00226 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46839 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.46984 * 119.99571 * 21 19 17 24 24 H 1.48495 * 109.47208 * 239.99883 * 21 19 17 25 25 C 1.46905 * 111.26804 * 296.75588 * 12 11 10 26 26 C 1.47088 * 120.87393 * 180.02562 * 9 7 6 27 27 H 1.09005 * 109.47274 * 59.99720 * 1 2 3 28 28 H 1.08993 * 109.47007 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46875 * 300.00144 * 1 2 3 30 30 H 1.08998 * 109.47406 * 240.00621 * 2 1 3 31 31 H 1.08996 * 109.47308 * 120.00134 * 2 1 3 32 32 H 1.08998 * 109.47387 * 304.99978 * 3 2 1 33 33 H 1.09004 * 109.47060 * 305.29432 * 4 3 2 34 34 H 1.08995 * 109.47564 * 65.29921 * 4 3 2 35 35 H 1.08999 * 109.46947 * 294.74027 * 5 4 3 36 36 H 1.09007 * 109.47305 * 54.73731 * 5 4 3 37 37 H 1.08998 * 109.47676 * 174.74317 * 5 4 3 38 38 H 1.08995 * 109.47176 * 307.19996 * 6 3 2 39 39 H 1.08998 * 109.47133 * 187.19694 * 6 3 2 40 40 H 1.09006 * 109.62964 * 248.52087 * 10 9 7 41 41 H 1.08997 * 109.63004 * 9.10672 * 10 9 7 42 42 H 1.08996 * 109.64801 * 294.07991 * 11 10 9 43 43 H 1.08999 * 109.42090 * 173.94694 * 11 10 9 44 44 H 1.08998 * 109.47437 * 54.30341 * 13 12 11 45 45 H 1.09004 * 109.47463 * 174.30116 * 13 12 11 46 46 H 0.96997 * 120.00115 * 0.02562 * 16 14 13 47 47 H 0.96998 * 120.00099 * 179.97438 * 20 19 17 48 48 H 1.08993 * 109.49680 * 303.14583 * 25 12 11 49 49 H 1.09003 * 109.49039 * 183.06572 * 25 12 11 50 50 H 1.08999 * 109.63163 * 350.89248 * 26 9 7 51 51 H 1.09001 * 109.62862 * 111.47998 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6353 2.1265 1.3074 5 6 2.0286 3.6041 1.2530 6 6 3.5648 1.4444 -0.1257 7 6 3.9572 0.9326 -1.4879 8 8 3.1055 0.5381 -2.2558 9 7 5.2546 0.9135 -1.8525 10 6 6.3026 1.3931 -0.9389 11 6 7.3868 0.3084 -0.8373 12 7 7.8515 -0.0400 -2.1866 13 6 9.0080 -0.9439 -2.1281 14 6 10.1791 -0.2221 -1.5128 15 8 10.0620 0.9319 -1.1584 16 7 11.3569 -0.8586 -1.3573 17 6 12.4221 -0.2021 -0.7971 18 1 12.3176 0.8252 -0.4807 19 6 13.6365 -0.8582 -0.6372 20 7 13.7638 -2.1080 -1.0226 21 14 15.0882 0.0366 0.1255 22 1 14.6882 1.4243 0.4711 23 1 15.5181 -0.6760 1.3554 24 1 16.2122 0.0729 -0.8441 25 6 6.7680 -0.6227 -2.9895 26 6 5.6591 0.4187 -3.1772 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6054 1.9816 -0.8418 33 1 0.5570 2.0424 1.4428 34 1 2.1449 1.6454 2.1421 35 1 3.1145 3.6897 1.2116 36 1 1.5938 4.0634 0.3652 37 1 1.6579 4.1118 2.1434 38 1 3.9934 0.8000 0.6418 39 1 3.9387 2.4602 0.0023 40 1 6.7366 2.3132 -1.3303 41 1 5.8737 1.5772 0.0461 42 1 6.9746 -0.5777 -0.3545 43 1 8.2239 0.6865 -0.2506 44 1 8.7584 -1.8145 -1.5216 45 1 9.2687 -1.2661 -3.1362 46 1 11.4508 -1.7812 -1.6417 47 1 14.6117 -2.5659 -0.9113 48 1 6.3644 -1.4957 -2.4768 49 1 7.1565 -0.9198 -3.9636 50 1 4.8044 -0.0417 -3.6728 51 1 6.0325 1.2472 -3.7792 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113461503.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:23 Heat of formation + Delta-G solvation = -81.046937 kcal Electronic energy + Delta-G solvation = -28376.211424 eV Core-core repulsion = 24502.990988 eV Total energy + Delta-G solvation = -3873.220436 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.42088 -38.84952 -37.62308 -36.68772 -34.52156 -33.80580 -31.96231 -31.43061 -31.29035 -29.96977 -28.64847 -25.97296 -25.09602 -23.84187 -23.53055 -22.81615 -21.32092 -20.02244 -19.29988 -18.85320 -17.91921 -17.24417 -16.30822 -15.93185 -15.63122 -15.08821 -14.91272 -14.79011 -14.73831 -14.61963 -14.34382 -14.04659 -13.89770 -13.66236 -13.55080 -13.33186 -13.02651 -12.58980 -12.44813 -12.18886 -12.08748 -11.96969 -11.68124 -11.58598 -11.55204 -11.37984 -11.25872 -11.16898 -11.14159 -10.85593 -10.74926 -10.61608 -10.58013 -10.37297 -10.26166 -9.64960 -9.52272 -8.84575 -8.39081 -8.02318 -7.92226 -6.45524 -3.86451 2.58864 2.93194 3.13398 3.24450 3.31119 3.84619 3.92123 4.19872 4.37107 4.51065 4.57333 4.80025 4.87045 4.99038 5.00856 5.08511 5.13695 5.18367 5.21198 5.23486 5.26929 5.31591 5.34415 5.41280 5.45605 5.54755 5.58120 5.62629 5.71601 5.73096 5.77497 5.79900 5.84425 5.87576 5.91893 5.97500 6.06957 6.11980 6.17481 6.22058 6.25616 6.29888 6.49544 7.12244 7.28302 7.41411 7.51740 8.02369 8.13777 8.57156 9.14070 9.50181 10.01199 10.72166 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.021715 B = 0.002252 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.144589 B =12429.877892 C =13080.699161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C -0.070 4.070 4 C -0.123 4.123 5 C -0.156 4.156 6 C -0.140 4.140 7 C 0.515 3.485 8 O -0.546 6.546 9 N -0.614 5.614 10 C 0.114 3.886 11 C 0.039 3.961 12 N -0.515 5.515 13 C 0.046 3.954 14 C 0.443 3.557 15 O -0.579 6.579 16 N -0.563 5.563 17 C -0.298 4.298 18 H 0.104 0.896 19 C 0.022 3.978 20 N -0.901 5.901 21 Si 0.929 3.071 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.281 1.281 25 C 0.041 3.959 26 C 0.118 3.882 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.081 0.919 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.027 0.973 43 H 0.115 0.885 44 H 0.047 0.953 45 H 0.090 0.910 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.034 0.966 49 H 0.086 0.914 50 H 0.092 0.908 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.534 3.615 1.906 21.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.089 4.089 4 C -0.160 4.160 5 C -0.213 4.213 6 C -0.180 4.180 7 C 0.304 3.696 8 O -0.424 6.424 9 N -0.347 5.347 10 C -0.009 4.009 11 C -0.090 4.090 12 N -0.239 5.239 13 C -0.085 4.085 14 C 0.229 3.771 15 O -0.463 6.463 16 N -0.200 5.200 17 C -0.428 4.428 18 H 0.122 0.878 19 C -0.180 4.180 20 N -0.542 5.542 21 Si 0.756 3.244 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.207 1.207 25 C -0.088 4.088 26 C -0.004 4.004 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.099 0.901 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.045 0.955 43 H 0.133 0.867 44 H 0.065 0.935 45 H 0.108 0.892 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.052 0.948 49 H 0.104 0.896 50 H 0.111 0.889 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -21.739 4.492 1.522 22.251 hybrid contribution 0.872 -1.055 0.570 1.483 sum -20.867 3.436 2.091 21.252 Atomic orbital electron populations 1.21773 0.96163 1.01226 1.01466 1.21684 0.95814 0.96177 1.02633 1.20983 0.92830 0.97014 0.98080 1.21655 1.01504 0.95563 0.97279 1.21852 1.01602 0.96248 1.01636 1.21851 0.98161 1.03069 0.94875 1.20726 0.81663 0.77955 0.89304 1.90637 1.49121 1.48388 1.54252 1.48314 1.06290 1.63269 1.16874 1.22002 0.87481 0.98105 0.93263 1.22725 0.98768 0.96852 0.90620 1.61501 1.05327 1.42862 1.14241 1.21853 0.91208 0.93733 1.01692 1.19709 0.84138 0.88001 0.85276 1.90472 1.83418 1.17528 1.54889 1.41886 1.09296 1.14462 1.54331 1.19740 0.88483 0.98499 1.36060 0.87815 1.25277 0.99098 0.95817 0.97807 1.69618 1.26756 1.10335 1.47517 0.85801 0.80545 0.79515 0.78492 1.19203 1.20773 1.20745 1.22513 0.91883 0.95485 0.98925 1.21680 0.97049 0.97456 0.84250 0.92814 0.93152 0.92944 0.90083 0.92792 0.90460 0.91451 0.91946 0.92517 0.92711 0.92831 0.88922 0.88732 0.90012 0.89706 0.95495 0.86664 0.93472 0.89190 0.77484 0.91892 0.94782 0.89579 0.88931 0.90726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.67 37.16 0.36 -0.90 16 2 C -0.13 -1.21 5.20 -26.73 -0.14 -1.35 16 3 C -0.07 -0.63 1.49 -90.62 -0.14 -0.77 16 4 C -0.12 -0.89 5.27 -26.73 -0.14 -1.03 16 5 C -0.16 -1.07 9.55 37.16 0.35 -0.71 16 6 C -0.14 -1.29 3.43 -27.88 -0.10 -1.39 16 7 C 0.51 6.37 7.44 -10.98 -0.08 6.29 16 8 O -0.55 -8.20 13.45 5.56 0.07 -8.12 16 9 N -0.61 -7.62 3.00 -172.15 -0.52 -8.14 16 10 C 0.11 1.39 6.50 -3.37 -0.02 1.37 16 11 C 0.04 0.58 5.27 -3.46 -0.02 0.56 16 12 N -0.51 -8.13 4.37 -235.44 -1.03 -9.15 16 13 C 0.05 0.79 5.45 -4.98 -0.03 0.77 16 14 C 0.44 9.98 7.44 -10.98 -0.08 9.90 16 15 O -0.58 -14.70 13.91 5.55 0.08 -14.62 16 16 N -0.56 -13.82 5.29 -10.96 -0.06 -13.88 16 17 C -0.30 -8.08 9.68 -14.93 -0.14 -8.22 16 18 H 0.10 2.95 7.16 -52.48 -0.38 2.57 16 19 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 20 N -0.90 -24.10 13.05 55.50 0.72 -23.38 16 21 Si 0.93 20.62 29.55 -169.99 -5.02 15.60 16 22 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 25 C 0.04 0.52 5.62 -3.68 -0.02 0.50 16 26 C 0.12 1.47 6.60 -3.58 -0.02 1.45 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.38 6.46 -51.93 -0.34 0.05 16 30 H 0.08 0.98 5.95 -51.93 -0.31 0.67 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.81 7.93 -51.93 -0.41 0.39 16 33 H 0.07 0.47 6.33 -51.93 -0.33 0.14 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.38 6.68 -51.93 -0.35 0.03 16 36 H 0.05 0.38 8.14 -51.92 -0.42 -0.04 16 37 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.09 0.78 7.83 -51.93 -0.41 0.37 16 39 H 0.09 0.76 6.05 -51.93 -0.31 0.44 16 40 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.08 0.81 6.04 -51.93 -0.31 0.50 16 42 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.12 2.07 5.77 -51.93 -0.30 1.77 16 44 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 45 H 0.09 1.39 7.97 -51.93 -0.41 0.98 16 46 H 0.39 9.25 7.90 -40.82 -0.32 8.93 16 47 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 48 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.09 0.98 7.99 -51.93 -0.41 0.57 16 50 H 0.09 1.15 7.06 -51.93 -0.37 0.78 16 51 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 393.05 15.07 5.92 5.92 Total: -1.00 -30.89 393.05 -8.88 -39.77 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -8.74 Total: 9.07 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: -0.31 Total: 6.93 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: -0.88 Total: -54.55 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: 0.15 Total: -22.74 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.89 -8.88 -39.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113461503.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.277 kcal (2) G-P(sol) polarization free energy of solvation -30.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds