Wall clock time and date at job start Fri Apr 10 2020 18:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47042 * 2 1 4 4 C 1.52997 * 109.46988 * 65.00303 * 3 2 1 5 5 C 1.52999 * 109.47307 * 185.29947 * 4 3 2 6 6 C 1.52999 * 109.47097 * 184.99932 * 3 2 1 7 7 C 1.50709 * 109.47152 * 67.19960 * 6 3 2 8 8 O 1.21280 * 119.99400 * 356.39999 * 7 6 3 9 9 N 1.34774 * 119.99674 * 176.39984 * 7 6 3 10 10 C 1.47071 * 120.88559 * 359.72035 * 9 7 6 11 11 C 1.53696 * 108.27800 * 128.75553 * 10 9 7 12 12 N 1.46901 * 109.25546 * 54.08232 * 11 10 9 13 13 C 1.46897 * 110.99970 * 172.60918 * 12 11 10 14 14 C 1.50698 * 109.47244 * 294.30122 * 13 12 11 15 15 O 1.21289 * 119.99899 * 359.97438 * 14 13 12 16 16 N 1.34781 * 120.00018 * 180.02562 * 14 13 12 17 17 C 1.37094 * 119.99852 * 180.02562 * 16 14 13 18 18 H 1.08006 * 120.00391 * 359.97438 * 17 16 14 19 19 C 1.38952 * 120.00131 * 180.02562 * 17 16 14 20 20 N 1.31411 * 119.99817 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00226 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46839 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.46984 * 119.99571 * 21 19 17 24 24 H 1.48495 * 109.47208 * 239.99883 * 21 19 17 25 25 C 1.46905 * 111.26804 * 296.75588 * 12 11 10 26 26 C 1.47088 * 120.87393 * 180.02562 * 9 7 6 27 27 H 1.09005 * 109.47274 * 59.99720 * 1 2 3 28 28 H 1.08993 * 109.47007 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46875 * 300.00144 * 1 2 3 30 30 H 1.08998 * 109.47406 * 240.00621 * 2 1 3 31 31 H 1.08996 * 109.47308 * 120.00134 * 2 1 3 32 32 H 1.08998 * 109.47387 * 304.99978 * 3 2 1 33 33 H 1.09004 * 109.47060 * 305.29432 * 4 3 2 34 34 H 1.08995 * 109.47564 * 65.29921 * 4 3 2 35 35 H 1.08999 * 109.46947 * 294.74027 * 5 4 3 36 36 H 1.09007 * 109.47305 * 54.73731 * 5 4 3 37 37 H 1.08998 * 109.47676 * 174.74317 * 5 4 3 38 38 H 1.08995 * 109.47176 * 307.19996 * 6 3 2 39 39 H 1.08998 * 109.47133 * 187.19694 * 6 3 2 40 40 H 1.09006 * 109.62964 * 248.52087 * 10 9 7 41 41 H 1.08997 * 109.63004 * 9.10672 * 10 9 7 42 42 H 1.08996 * 109.64801 * 294.07991 * 11 10 9 43 43 H 1.08999 * 109.42090 * 173.94694 * 11 10 9 44 44 H 1.08998 * 109.47437 * 54.30341 * 13 12 11 45 45 H 1.09004 * 109.47463 * 174.30116 * 13 12 11 46 46 H 0.96997 * 120.00115 * 0.02562 * 16 14 13 47 47 H 0.96998 * 120.00099 * 179.97438 * 20 19 17 48 48 H 1.08993 * 109.49680 * 303.14583 * 25 12 11 49 49 H 1.09003 * 109.49039 * 183.06572 * 25 12 11 50 50 H 1.08999 * 109.63163 * 350.89248 * 26 9 7 51 51 H 1.09001 * 109.62862 * 111.47998 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6353 2.1265 1.3074 5 6 2.0286 3.6041 1.2530 6 6 3.5648 1.4444 -0.1257 7 6 3.9572 0.9326 -1.4879 8 8 3.1055 0.5381 -2.2558 9 7 5.2546 0.9135 -1.8525 10 6 6.3026 1.3931 -0.9389 11 6 7.3868 0.3084 -0.8373 12 7 7.8515 -0.0400 -2.1866 13 6 9.0080 -0.9439 -2.1281 14 6 10.1791 -0.2221 -1.5128 15 8 10.0620 0.9319 -1.1584 16 7 11.3569 -0.8586 -1.3573 17 6 12.4221 -0.2021 -0.7971 18 1 12.3176 0.8252 -0.4807 19 6 13.6365 -0.8582 -0.6372 20 7 13.7638 -2.1080 -1.0226 21 14 15.0882 0.0366 0.1255 22 1 14.6882 1.4243 0.4711 23 1 15.5181 -0.6760 1.3554 24 1 16.2122 0.0729 -0.8441 25 6 6.7680 -0.6227 -2.9895 26 6 5.6591 0.4187 -3.1772 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6054 1.9816 -0.8418 33 1 0.5570 2.0424 1.4428 34 1 2.1449 1.6454 2.1421 35 1 3.1145 3.6897 1.2116 36 1 1.5938 4.0634 0.3652 37 1 1.6579 4.1118 2.1434 38 1 3.9934 0.8000 0.6418 39 1 3.9387 2.4602 0.0023 40 1 6.7366 2.3132 -1.3303 41 1 5.8737 1.5772 0.0461 42 1 6.9746 -0.5777 -0.3545 43 1 8.2239 0.6865 -0.2506 44 1 8.7584 -1.8145 -1.5216 45 1 9.2687 -1.2661 -3.1362 46 1 11.4508 -1.7812 -1.6417 47 1 14.6117 -2.5659 -0.9113 48 1 6.3644 -1.4957 -2.4768 49 1 7.1565 -0.9198 -3.9636 50 1 4.8044 -0.0417 -3.6728 51 1 6.0325 1.2472 -3.7792 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113461503.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:38:22 Heat of formation + Delta-G solvation = -100.932645 kcal Electronic energy + Delta-G solvation = -28377.073733 eV Core-core repulsion = 24502.990988 eV Total energy + Delta-G solvation = -3874.082746 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.43375 -40.33928 -38.89347 -37.59413 -36.03949 -35.39604 -33.25391 -32.63516 -32.40073 -30.88247 -29.86357 -27.39759 -26.13738 -25.26781 -24.57558 -23.47367 -22.35727 -21.06657 -20.76438 -19.92676 -19.77619 -18.23496 -17.79116 -17.09992 -16.62083 -16.57500 -16.34021 -16.10899 -15.63162 -15.54671 -15.40293 -15.36509 -15.25635 -14.94263 -14.43539 -14.29348 -14.02773 -13.85894 -13.51368 -13.39762 -13.20361 -12.97286 -12.85847 -12.78118 -12.67905 -12.46126 -12.39168 -12.28510 -12.17235 -12.13063 -12.07300 -11.98220 -11.45443 -11.43262 -11.35164 -11.24427 -10.59706 -10.32646 -9.98692 -9.72726 -9.21650 -8.44846 -5.92951 1.37742 1.43380 1.57062 1.62962 1.96452 2.07296 2.29418 2.73149 3.22367 3.37547 3.50899 3.80048 3.88451 3.91857 3.99665 4.11720 4.18034 4.23480 4.28129 4.39920 4.43275 4.48226 4.49110 4.50807 4.55461 4.61151 4.64054 4.65857 4.73332 4.80127 4.86581 4.93936 4.96741 4.98165 5.05668 5.13952 5.16287 5.28518 5.31992 5.43282 5.45475 5.48945 5.56458 5.58806 5.82495 6.05249 6.13941 6.42955 6.62309 7.15141 7.17055 7.58901 8.13779 8.72777 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.021715 B = 0.002252 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.144589 B =12429.877892 C =13080.699161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.125 4.125 3 C -0.066 4.066 4 C -0.117 4.117 5 C -0.157 4.157 6 C -0.137 4.137 7 C 0.511 3.489 8 O -0.575 6.575 9 N -0.615 5.615 10 C 0.123 3.877 11 C 0.041 3.959 12 N -0.531 5.531 13 C 0.058 3.942 14 C 0.444 3.556 15 O -0.610 6.610 16 N -0.576 5.576 17 C -0.327 4.327 18 H 0.081 0.919 19 C -0.016 4.016 20 N -0.922 5.922 21 Si 0.992 3.008 22 H -0.272 1.272 23 H -0.272 1.272 24 H -0.274 1.274 25 C 0.047 3.953 26 C 0.119 3.881 27 H 0.044 0.956 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.049 0.951 37 H 0.061 0.939 38 H 0.108 0.892 39 H 0.111 0.889 40 H 0.073 0.927 41 H 0.114 0.886 42 H 0.034 0.966 43 H 0.083 0.917 44 H 0.064 0.936 45 H 0.111 0.889 46 H 0.395 0.605 47 H 0.276 0.724 48 H 0.037 0.963 49 H 0.102 0.898 50 H 0.093 0.907 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.197 3.669 2.733 22.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.162 4.162 3 C -0.085 4.085 4 C -0.154 4.154 5 C -0.214 4.214 6 C -0.176 4.176 7 C 0.302 3.698 8 O -0.455 6.455 9 N -0.349 5.349 10 C 0.000 4.000 11 C -0.088 4.088 12 N -0.256 5.256 13 C -0.073 4.073 14 C 0.231 3.769 15 O -0.495 6.495 16 N -0.213 5.213 17 C -0.457 4.457 18 H 0.099 0.901 19 C -0.215 4.215 20 N -0.564 5.564 21 Si 0.816 3.184 22 H -0.196 1.196 23 H -0.198 1.198 24 H -0.199 1.199 25 C -0.081 4.081 26 C -0.004 4.004 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.091 0.909 41 H 0.132 0.868 42 H 0.052 0.948 43 H 0.101 0.899 44 H 0.082 0.918 45 H 0.129 0.871 46 H 0.229 0.771 47 H 0.086 0.914 48 H 0.055 0.945 49 H 0.121 0.879 50 H 0.111 0.889 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -22.416 4.534 2.343 22.990 hybrid contribution 1.000 -1.062 0.275 1.485 sum -21.416 3.472 2.617 21.853 Atomic orbital electron populations 1.21757 0.95391 1.01513 1.01763 1.21643 0.96565 0.96415 1.01600 1.20933 0.92546 0.96531 0.98493 1.21612 1.01888 0.95651 0.96277 1.21860 1.01780 0.95941 1.01824 1.21916 0.98455 1.04059 0.93159 1.21276 0.81138 0.77241 0.90146 1.90631 1.49801 1.49657 1.55406 1.48382 1.06478 1.63166 1.16825 1.21943 0.86788 0.96545 0.94687 1.22627 0.98336 0.97819 0.89997 1.61484 1.05958 1.43149 1.15029 1.21721 0.89554 0.93549 1.02468 1.20667 0.84750 0.87737 0.83714 1.90454 1.84126 1.19211 1.55751 1.41958 1.09651 1.14634 1.55080 1.19685 0.90109 0.98074 1.37791 0.90075 1.26033 1.01044 0.96552 0.97869 1.69680 1.27589 1.11161 1.47921 0.84882 0.77395 0.78145 0.78003 1.19606 1.19755 1.19894 1.22532 0.90966 0.95435 0.99165 1.21655 0.96858 0.97373 0.84511 0.93664 0.92915 0.91463 0.92854 0.91948 0.92238 0.91015 0.91078 0.92252 0.93230 0.91999 0.87415 0.87132 0.90883 0.86785 0.94761 0.89908 0.91778 0.87119 0.77133 0.91426 0.94455 0.87935 0.88910 0.90835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.67 71.98 0.70 -1.64 16 2 C -0.12 -2.28 5.20 30.60 0.16 -2.12 16 3 C -0.07 -1.10 1.49 -10.79 -0.02 -1.11 16 4 C -0.12 -1.43 5.27 30.59 0.16 -1.27 16 5 C -0.16 -1.81 9.55 71.98 0.69 -1.13 16 6 C -0.14 -2.26 3.43 29.85 0.10 -2.15 16 7 C 0.51 12.09 7.44 87.66 0.65 12.74 16 8 O -0.57 -17.10 13.45 -3.03 -0.04 -17.14 16 9 N -0.62 -14.47 3.00 -816.96 -2.45 -16.92 16 10 C 0.12 2.82 6.50 86.50 0.56 3.38 16 11 C 0.04 1.18 5.27 86.54 0.46 1.64 16 12 N -0.53 -16.15 4.37 -898.80 -3.93 -20.08 16 13 C 0.06 1.92 5.45 85.56 0.47 2.38 16 14 C 0.44 20.12 7.44 87.66 0.65 20.78 16 15 O -0.61 -31.57 13.91 -3.06 -0.04 -31.62 16 16 N -0.58 -28.63 5.29 -306.98 -1.62 -30.26 16 17 C -0.33 -18.05 9.68 84.04 0.81 -17.24 16 18 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 19 C -0.02 -0.82 5.50 84.93 0.47 -0.35 16 20 N -0.92 -49.14 13.05 21.66 0.28 -48.85 16 21 Si 0.99 42.18 29.55 68.60 2.03 44.21 16 22 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 23 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 24 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 25 C 0.05 1.13 5.62 86.40 0.49 1.61 16 26 C 0.12 2.81 6.60 86.36 0.57 3.38 16 27 H 0.04 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.07 0.86 6.46 -2.39 -0.02 0.84 16 30 H 0.05 1.29 5.95 -2.39 -0.01 1.27 16 31 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.06 1.21 7.93 -2.39 -0.02 1.19 16 33 H 0.07 0.83 6.33 -2.38 -0.02 0.81 16 34 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.06 0.65 6.68 -2.39 -0.02 0.63 16 36 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 37 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.11 1.50 7.83 -2.39 -0.02 1.48 16 39 H 0.11 1.49 6.05 -2.39 -0.01 1.48 16 40 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 41 H 0.11 1.91 6.04 -2.39 -0.01 1.89 16 42 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.08 2.99 5.77 -2.39 -0.01 2.98 16 44 H 0.06 1.93 8.12 -2.39 -0.02 1.91 16 45 H 0.11 3.21 7.97 -2.38 -0.02 3.19 16 46 H 0.40 18.80 7.90 -92.71 -0.73 18.07 16 47 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 48 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 49 H 0.10 2.11 7.99 -2.39 -0.02 2.09 16 50 H 0.09 2.22 7.06 -2.39 -0.02 2.20 16 51 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -67.28 393.05 1.33 -65.95 By element: Atomic # 1 Polarization: 35.62 SS G_CDS: 0.19 Total: 35.81 kcal Atomic # 6 Polarization: 11.98 SS G_CDS: 6.92 Total: 18.90 kcal Atomic # 7 Polarization: -108.39 SS G_CDS: -7.72 Total: -116.11 kcal Atomic # 8 Polarization: -48.68 SS G_CDS: -0.08 Total: -48.76 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -67.28 1.33 -65.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113461503.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.984 kcal (2) G-P(sol) polarization free energy of solvation -67.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds