Wall clock time and date at job start Fri Apr 10 2020 18:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99429 * 2 1 4 4 C 1.50708 * 109.46675 * 180.02562 * 3 2 1 5 5 O 1.21277 * 120.00273 * 359.97438 * 4 3 2 6 6 N 1.34772 * 119.99785 * 180.02562 * 4 3 2 7 7 C 1.46496 * 120.00113 * 180.02562 * 6 4 3 8 8 C 1.53948 * 113.58102 * 204.99740 * 7 6 4 9 9 C 1.52908 * 86.78626 * 220.65956 * 8 7 6 10 10 C 1.52905 * 121.13932 * 150.61525 * 9 8 7 11 11 C 1.53948 * 86.78200 * 100.82450 * 10 9 8 12 12 N 1.46906 * 113.57852 * 139.33722 * 11 10 9 13 13 C 1.46901 * 110.99793 * 155.00085 * 12 11 10 14 14 C 1.50701 * 109.46921 * 179.97438 * 13 12 11 15 15 O 1.21294 * 119.99849 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99795 * 179.97438 * 14 13 12 17 17 C 1.37101 * 119.99707 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99704 * 359.97438 * 17 16 14 19 19 C 1.38941 * 119.99927 * 180.02562 * 17 16 14 20 20 N 1.31413 * 120.00506 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 120.00009 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.47177 * 89.99959 * 21 19 17 23 23 H 1.48505 * 109.47036 * 210.00243 * 21 19 17 24 24 H 1.48499 * 109.46776 * 329.99732 * 21 19 17 25 25 C 1.52910 * 121.13875 * 259.18147 * 9 8 7 26 26 C 1.52910 * 88.03802 * 24.89648 * 9 8 7 27 27 H 1.08996 * 109.47482 * 60.00350 * 1 2 3 28 28 H 1.09004 * 109.46620 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47488 * 299.99406 * 1 2 3 30 30 H 1.09002 * 109.47255 * 60.00744 * 3 2 1 31 31 H 1.08993 * 109.47335 * 300.00187 * 3 2 1 32 32 H 0.97004 * 120.00236 * 359.97438 * 6 4 3 33 33 H 1.09006 * 112.87709 * 336.13081 * 7 6 4 34 34 H 1.09005 * 113.66271 * 106.18819 * 8 7 6 35 35 H 1.08999 * 113.74755 * 335.14843 * 8 7 6 36 36 H 1.08993 * 113.65988 * 346.34952 * 10 9 8 37 37 H 1.08999 * 113.66243 * 215.29852 * 10 9 8 38 38 H 1.09002 * 113.58274 * 270.04979 * 11 10 9 39 39 H 1.00899 * 110.99995 * 31.04483 * 12 11 10 40 40 H 1.09002 * 109.47401 * 59.99808 * 13 12 11 41 41 H 1.09001 * 109.46874 * 299.99821 * 13 12 11 42 42 H 0.96995 * 120.00011 * 0.02562 * 16 14 13 43 43 H 0.96993 * 120.00255 * 180.02562 * 20 19 17 44 44 H 1.09000 * 113.66169 * 144.69776 * 25 9 8 45 45 H 1.08998 * 113.66306 * 13.64833 * 25 9 8 46 46 H 1.08999 * 113.66166 * 89.57472 * 26 9 8 47 47 H 1.09001 * 113.66107 * 220.62624 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 8 4.0341 0.0917 -0.0006 6 7 4.2763 2.2969 -0.0002 7 6 5.7367 2.1814 -0.0014 8 6 6.4520 3.4070 0.5954 9 6 7.4695 3.2565 -0.5361 10 6 8.2146 4.4686 -1.0959 11 6 9.4102 4.0225 -0.2348 12 7 10.7060 4.1571 -0.9137 13 6 11.7973 4.3015 0.0590 14 6 13.1079 4.4361 -0.6728 15 8 13.1304 4.4144 -1.8853 16 7 14.2547 4.5817 0.0201 17 6 15.4469 4.7047 -0.6457 18 1 15.4670 4.6845 -1.7253 19 6 16.6292 4.8542 0.0686 20 7 17.7719 4.9726 -0.5694 21 14 16.5944 4.8884 1.9360 22 1 16.7439 3.5067 2.4592 23 1 17.7103 5.7307 2.4366 24 1 15.3014 5.4550 2.3966 25 6 8.8285 2.5984 -0.2949 26 6 6.3828 2.5516 -1.3488 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 1.6885 1.8464 0.8901 31 1 1.6884 1.8464 -0.8899 32 1 3.8591 3.1727 0.0001 33 1 6.0870 1.2320 0.4039 34 1 6.8702 3.2300 1.5863 35 1 5.8685 4.3260 0.5396 36 1 7.7877 5.4238 -0.7904 37 1 8.4017 4.4102 -2.1681 38 1 9.4109 4.4526 0.7667 39 1 10.6956 4.9295 -1.5628 40 1 11.8295 3.4222 0.7023 41 1 11.6271 5.1902 0.6667 42 1 14.2366 4.5994 0.9897 43 1 18.5973 5.0766 -0.0708 44 1 9.1881 2.0142 -1.1420 45 1 8.8921 2.0596 0.6504 46 1 5.7788 3.2294 -1.9520 47 1 6.7458 1.6913 -1.9111 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120475636.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:27 Heat of formation + Delta-G solvation = -63.219626 kcal Electronic energy + Delta-G solvation = -26418.208683 eV Core-core repulsion = 22409.928202 eV Total energy + Delta-G solvation = -4008.280481 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.07236 -39.79063 -38.41311 -37.87421 -36.38899 -34.23935 -33.72931 -32.08712 -31.59609 -29.31012 -26.90350 -26.37522 -26.17904 -25.92036 -24.04715 -22.82553 -21.07693 -20.66426 -19.37084 -18.43454 -18.14649 -17.67484 -17.24820 -16.77684 -16.23020 -16.22454 -15.59890 -15.37512 -15.23923 -15.03955 -14.77270 -14.72431 -13.97788 -13.74977 -13.32525 -13.18375 -13.08765 -13.02819 -12.79963 -12.55808 -12.46778 -12.19928 -12.05648 -11.99327 -11.81910 -11.44383 -11.15699 -11.11460 -10.72658 -10.58499 -10.35204 -10.30986 -10.24818 -10.04794 -9.95354 -9.55835 -9.38563 -8.54879 -8.17829 -8.11151 -6.29733 -3.81121 2.19705 2.38467 3.03160 3.08062 3.15848 3.56377 3.76246 4.02985 4.11381 4.12278 4.21219 4.32542 4.34676 4.48446 4.52167 4.60545 4.62382 4.77995 4.79921 4.83122 4.98397 5.14189 5.15375 5.20331 5.24366 5.32663 5.41062 5.54959 5.63382 5.69946 5.71816 5.73953 5.81714 5.83346 5.94522 5.96615 6.16232 6.23539 6.30878 6.44314 7.07092 7.21634 7.59960 7.62445 7.82313 8.16257 8.61538 8.96577 9.44125 9.84739 10.83482 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.038909 B = 0.001611 C = 0.001588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.460215 B =17379.764274 C =17628.696731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.367 6.367 3 C 0.042 3.958 4 C 0.512 3.488 5 O -0.516 6.516 6 N -0.720 5.720 7 C 0.125 3.875 8 C -0.121 4.121 9 C -0.103 4.103 10 C -0.124 4.124 11 C 0.061 3.939 12 N -0.656 5.656 13 C 0.047 3.953 14 C 0.450 3.550 15 O -0.565 6.565 16 N -0.591 5.591 17 C -0.305 4.305 18 H 0.119 0.881 19 C 0.042 3.958 20 N -0.882 5.882 21 Si 0.880 3.120 22 H -0.270 1.270 23 H -0.277 1.277 24 H -0.270 1.270 25 C -0.101 4.101 26 C -0.135 4.135 27 H 0.044 0.956 28 H 0.092 0.908 29 H 0.044 0.956 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.400 0.600 33 H 0.116 0.884 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.066 0.934 37 H 0.093 0.907 38 H 0.070 0.930 39 H 0.351 0.649 40 H 0.086 0.914 41 H 0.043 0.957 42 H 0.370 0.630 43 H 0.273 0.727 44 H 0.096 0.904 45 H 0.065 0.935 46 H 0.085 0.915 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.761 -1.480 6.119 35.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C -0.038 4.038 4 C 0.297 3.703 5 O -0.390 6.390 6 N -0.372 5.372 7 C 0.021 3.979 8 C -0.159 4.159 9 C -0.104 4.104 10 C -0.162 4.162 11 C -0.049 4.049 12 N -0.289 5.289 13 C -0.086 4.086 14 C 0.236 3.764 15 O -0.447 6.447 16 N -0.231 5.231 17 C -0.434 4.434 18 H 0.137 0.863 19 C -0.161 4.161 20 N -0.522 5.522 21 Si 0.706 3.294 22 H -0.196 1.196 23 H -0.202 1.202 24 H -0.196 1.196 25 C -0.139 4.139 26 C -0.173 4.173 27 H 0.063 0.937 28 H 0.110 0.890 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.234 0.766 33 H 0.134 0.866 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.084 0.916 37 H 0.111 0.889 38 H 0.088 0.912 39 H 0.172 0.828 40 H 0.105 0.895 41 H 0.061 0.939 42 H 0.203 0.797 43 H 0.084 0.916 44 H 0.115 0.885 45 H 0.084 0.916 46 H 0.103 0.897 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -33.919 -3.134 5.226 34.462 hybrid contribution -0.369 1.732 1.870 2.576 sum -34.287 -1.402 7.096 35.042 Atomic orbital electron populations 1.22856 0.80221 1.03492 1.00144 1.88035 1.19907 1.25086 1.95417 1.22261 0.91749 0.87176 1.02620 1.20309 0.88673 0.84816 0.76508 1.90756 1.74550 1.26487 1.47255 1.45911 1.06963 1.08459 1.75916 1.22589 0.77658 1.00086 0.97548 1.23088 0.96623 0.97675 0.98496 1.22068 0.93198 0.98195 0.96975 1.23033 0.95649 0.96769 1.00734 1.23013 0.88079 0.97194 0.96615 1.60212 1.00730 1.50682 1.17270 1.21768 0.91426 1.00806 0.94554 1.19752 0.84545 0.83805 0.88330 1.90564 1.86441 1.54053 1.13610 1.42215 1.06973 1.66340 1.07569 1.19439 0.81542 1.47172 0.95235 0.86292 1.25030 0.95012 0.97635 0.98447 1.69620 0.97944 1.48809 1.35833 0.86670 0.78272 0.78921 0.85500 1.19589 1.20208 1.19565 1.22842 0.91911 0.96607 1.02572 1.23276 0.96835 1.00660 0.96559 0.93734 0.88968 0.93753 0.90222 0.90198 0.76562 0.86571 0.90449 0.89403 0.91558 0.88851 0.91244 0.82829 0.89540 0.93856 0.79706 0.91634 0.88517 0.91631 0.89697 0.90583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.25 16 2 O -0.37 -3.29 10.24 -55.14 -0.56 -3.85 16 3 C 0.04 0.25 6.42 36.01 0.23 0.48 16 4 C 0.51 4.66 7.91 -10.98 -0.09 4.57 16 5 O -0.52 -7.43 16.10 -14.35 -0.23 -7.66 16 6 N -0.72 -4.52 5.35 -52.86 -0.28 -4.80 16 7 C 0.13 0.98 4.24 -66.95 -0.28 0.69 16 8 C -0.12 -0.78 7.59 -26.28 -0.20 -0.98 16 9 C -0.10 -0.85 1.11 -154.71 -0.17 -1.02 16 10 C -0.12 -1.13 7.41 -26.29 -0.19 -1.33 16 11 C 0.06 0.69 4.14 -66.73 -0.28 0.41 16 12 N -0.66 -10.01 6.18 -106.95 -0.66 -10.67 16 13 C 0.05 0.79 6.01 -4.97 -0.03 0.76 16 14 C 0.45 10.29 7.82 -10.98 -0.09 10.20 16 15 O -0.56 -15.30 15.78 5.55 0.09 -15.21 16 16 N -0.59 -14.21 5.09 -10.96 -0.06 -14.26 16 17 C -0.31 -8.71 10.16 -14.94 -0.15 -8.86 16 18 H 0.12 3.88 7.39 -52.49 -0.39 3.49 16 19 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 20 N -0.88 -25.92 13.96 55.50 0.77 -25.15 16 21 Si 0.88 19.47 27.74 -169.99 -4.71 14.75 16 22 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.27 -5.43 6.52 56.52 0.37 -5.07 16 25 C -0.10 -1.07 7.64 -26.28 -0.20 -1.27 16 26 C -0.13 -1.08 7.64 -26.28 -0.20 -1.28 16 27 H 0.04 0.14 8.14 -51.93 -0.42 -0.28 16 28 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.04 0.14 8.14 -51.93 -0.42 -0.29 16 30 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.40 1.17 8.73 -40.82 -0.36 0.81 16 33 H 0.12 1.17 7.47 -51.93 -0.39 0.78 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.09 0.43 8.12 -51.93 -0.42 0.00 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 0.73 7.86 -51.93 -0.41 0.32 16 39 H 0.35 5.54 8.25 -39.29 -0.32 5.22 16 40 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.04 0.63 8.13 -51.93 -0.42 0.21 16 42 H 0.37 7.80 5.76 -40.82 -0.24 7.56 16 43 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 391.62 15.07 5.90 5.90 Total: -1.00 -37.00 391.62 -7.99 -44.99 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: -7.61 Total: 11.29 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: -0.63 Total: 4.67 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: -0.23 Total: -54.89 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.71 Total: -26.72 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -4.71 Total: 14.75 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.00 -7.99 -44.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120475636.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.227 kcal (2) G-P(sol) polarization free energy of solvation -37.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds