Wall clock time and date at job start Fri Apr 10 2020 18:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99429 * 2 1 4 4 C 1.50708 * 109.46675 * 180.02562 * 3 2 1 5 5 O 1.21277 * 120.00273 * 359.97438 * 4 3 2 6 6 N 1.34772 * 119.99785 * 180.02562 * 4 3 2 7 7 C 1.46496 * 120.00113 * 180.02562 * 6 4 3 8 8 C 1.53948 * 113.58102 * 204.99740 * 7 6 4 9 9 C 1.52908 * 86.78626 * 220.65956 * 8 7 6 10 10 C 1.52905 * 121.13932 * 150.61525 * 9 8 7 11 11 C 1.53948 * 86.78200 * 100.82450 * 10 9 8 12 12 N 1.46906 * 113.57852 * 139.33722 * 11 10 9 13 13 C 1.46901 * 110.99793 * 155.00085 * 12 11 10 14 14 C 1.50701 * 109.46921 * 179.97438 * 13 12 11 15 15 O 1.21294 * 119.99849 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99795 * 179.97438 * 14 13 12 17 17 C 1.37101 * 119.99707 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99704 * 359.97438 * 17 16 14 19 19 C 1.38941 * 119.99927 * 180.02562 * 17 16 14 20 20 N 1.31413 * 120.00506 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 120.00009 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.47177 * 89.99959 * 21 19 17 23 23 H 1.48505 * 109.47036 * 210.00243 * 21 19 17 24 24 H 1.48499 * 109.46776 * 329.99732 * 21 19 17 25 25 C 1.52910 * 121.13875 * 259.18147 * 9 8 7 26 26 C 1.52910 * 88.03802 * 24.89648 * 9 8 7 27 27 H 1.08996 * 109.47482 * 60.00350 * 1 2 3 28 28 H 1.09004 * 109.46620 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47488 * 299.99406 * 1 2 3 30 30 H 1.09002 * 109.47255 * 60.00744 * 3 2 1 31 31 H 1.08993 * 109.47335 * 300.00187 * 3 2 1 32 32 H 0.97004 * 120.00236 * 359.97438 * 6 4 3 33 33 H 1.09006 * 112.87709 * 336.13081 * 7 6 4 34 34 H 1.09005 * 113.66271 * 106.18819 * 8 7 6 35 35 H 1.08999 * 113.74755 * 335.14843 * 8 7 6 36 36 H 1.08993 * 113.65988 * 346.34952 * 10 9 8 37 37 H 1.08999 * 113.66243 * 215.29852 * 10 9 8 38 38 H 1.09002 * 113.58274 * 270.04979 * 11 10 9 39 39 H 1.00899 * 110.99995 * 31.04483 * 12 11 10 40 40 H 1.09002 * 109.47401 * 59.99808 * 13 12 11 41 41 H 1.09001 * 109.46874 * 299.99821 * 13 12 11 42 42 H 0.96995 * 120.00011 * 0.02562 * 16 14 13 43 43 H 0.96993 * 120.00255 * 180.02562 * 20 19 17 44 44 H 1.09000 * 113.66169 * 144.69776 * 25 9 8 45 45 H 1.08998 * 113.66306 * 13.64833 * 25 9 8 46 46 H 1.08999 * 113.66166 * 89.57472 * 26 9 8 47 47 H 1.09001 * 113.66107 * 220.62624 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 8 4.0341 0.0917 -0.0006 6 7 4.2763 2.2969 -0.0002 7 6 5.7367 2.1814 -0.0014 8 6 6.4520 3.4070 0.5954 9 6 7.4695 3.2565 -0.5361 10 6 8.2146 4.4686 -1.0959 11 6 9.4102 4.0225 -0.2348 12 7 10.7060 4.1571 -0.9137 13 6 11.7973 4.3015 0.0590 14 6 13.1079 4.4361 -0.6728 15 8 13.1304 4.4144 -1.8853 16 7 14.2547 4.5817 0.0201 17 6 15.4469 4.7047 -0.6457 18 1 15.4670 4.6845 -1.7253 19 6 16.6292 4.8542 0.0686 20 7 17.7719 4.9726 -0.5694 21 14 16.5944 4.8884 1.9360 22 1 16.7439 3.5067 2.4592 23 1 17.7103 5.7307 2.4366 24 1 15.3014 5.4550 2.3966 25 6 8.8285 2.5984 -0.2949 26 6 6.3828 2.5516 -1.3488 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 1.6885 1.8464 0.8901 31 1 1.6884 1.8464 -0.8899 32 1 3.8591 3.1727 0.0001 33 1 6.0870 1.2320 0.4039 34 1 6.8702 3.2300 1.5863 35 1 5.8685 4.3260 0.5396 36 1 7.7877 5.4238 -0.7904 37 1 8.4017 4.4102 -2.1681 38 1 9.4109 4.4526 0.7667 39 1 10.6956 4.9295 -1.5628 40 1 11.8295 3.4222 0.7023 41 1 11.6271 5.1902 0.6667 42 1 14.2366 4.5994 0.9897 43 1 18.5973 5.0766 -0.0708 44 1 9.1881 2.0142 -1.1420 45 1 8.8921 2.0596 0.6504 46 1 5.7788 3.2294 -1.9520 47 1 6.7458 1.6913 -1.9111 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120475636.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:26 Heat of formation + Delta-G solvation = -93.894467 kcal Electronic energy + Delta-G solvation = -26419.538844 eV Core-core repulsion = 22409.928202 eV Total energy + Delta-G solvation = -4009.610642 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.76914 -40.54204 -40.15964 -38.43775 -37.30592 -36.03324 -34.87978 -33.75572 -32.94725 -29.77940 -28.40835 -26.89123 -26.73443 -26.71691 -25.70869 -23.64800 -21.76074 -21.49094 -21.26881 -20.27614 -18.93398 -18.25815 -17.80436 -17.77711 -17.22425 -17.00674 -16.78210 -16.62258 -16.32193 -16.04676 -15.66410 -15.63942 -15.35434 -14.93766 -14.61190 -14.39771 -14.09264 -13.92730 -13.79678 -13.64922 -13.41659 -13.20001 -13.06615 -12.91804 -12.84827 -12.41440 -12.35918 -12.23625 -11.99211 -11.91865 -11.51841 -11.47265 -11.04828 -10.96907 -10.77750 -10.75635 -10.39665 -10.25067 -10.01505 -9.27423 -8.41496 -6.02662 1.29975 1.36061 1.44646 1.55280 1.89006 1.95615 2.23111 2.76368 3.14873 3.15134 3.37178 3.47718 3.58700 3.67040 3.75634 3.85566 3.93551 4.01911 4.18245 4.21170 4.30074 4.39227 4.45104 4.49070 4.50897 4.57026 4.58379 4.80650 4.81114 4.88177 4.92116 4.98149 5.01382 5.05531 5.10549 5.21820 5.36748 5.50601 5.55442 5.60667 5.92754 6.06491 6.18914 6.45384 6.58951 6.60137 6.87843 7.26009 7.39629 7.96454 8.76261 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.038909 B = 0.001611 C = 0.001588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.460215 B =17379.764274 C =17628.696731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.043 3.957 4 C 0.504 3.496 5 O -0.582 6.582 6 N -0.700 5.700 7 C 0.122 3.878 8 C -0.101 4.101 9 C -0.095 4.095 10 C -0.115 4.115 11 C 0.060 3.940 12 N -0.678 5.678 13 C 0.063 3.937 14 C 0.447 3.553 15 O -0.616 6.616 16 N -0.591 5.591 17 C -0.331 4.331 18 H 0.054 0.946 19 C -0.014 4.014 20 N -0.935 5.935 21 Si 0.966 3.034 22 H -0.258 1.258 23 H -0.274 1.274 24 H -0.230 1.230 25 C -0.110 4.110 26 C -0.134 4.134 27 H 0.060 0.940 28 H 0.090 0.910 29 H 0.061 0.939 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.421 0.579 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.117 0.883 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.345 0.655 40 H 0.109 0.891 41 H 0.079 0.921 42 H 0.390 0.610 43 H 0.279 0.721 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.101 0.899 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -37.949 0.388 9.633 39.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.331 6.331 3 C -0.036 4.036 4 C 0.292 3.708 5 O -0.461 6.461 6 N -0.354 5.354 7 C 0.017 3.983 8 C -0.139 4.139 9 C -0.096 4.096 10 C -0.153 4.153 11 C -0.050 4.050 12 N -0.311 5.311 13 C -0.070 4.070 14 C 0.235 3.765 15 O -0.500 6.500 16 N -0.233 5.233 17 C -0.460 4.460 18 H 0.072 0.928 19 C -0.213 4.213 20 N -0.575 5.575 21 Si 0.785 3.215 22 H -0.183 1.183 23 H -0.199 1.199 24 H -0.153 1.153 25 C -0.148 4.148 26 C -0.173 4.173 27 H 0.078 0.922 28 H 0.109 0.891 29 H 0.080 0.920 30 H 0.130 0.870 31 H 0.128 0.872 32 H 0.259 0.741 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.136 0.864 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.165 0.835 40 H 0.127 0.873 41 H 0.097 0.903 42 H 0.226 0.774 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.120 0.880 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -37.164 -1.217 8.751 38.199 hybrid contribution 0.601 1.121 0.601 1.407 sum -36.563 -0.096 9.351 37.740 Atomic orbital electron populations 1.23022 0.78297 1.04045 1.01722 1.87975 1.22160 1.27141 1.95816 1.22435 0.88995 0.86658 1.05482 1.21053 0.90354 0.84285 0.75153 1.90728 1.75891 1.28960 1.50496 1.45744 1.06257 1.08977 1.74388 1.22419 0.78660 0.99756 0.97479 1.23051 0.95331 0.97813 0.97694 1.21959 0.92451 0.97160 0.98034 1.22964 0.94622 0.98083 0.99666 1.23183 0.86517 0.97613 0.97663 1.60204 1.02281 1.50780 1.17807 1.21686 0.87749 1.03322 0.94221 1.21066 0.86316 0.80992 0.88101 1.90541 1.87545 1.55528 1.16416 1.42040 1.05884 1.66952 1.08397 1.19022 0.84376 1.49616 0.93015 0.92774 1.26119 0.93590 0.95952 1.05616 1.69805 0.99110 1.49615 1.39000 0.85355 0.80206 0.79709 0.76180 1.18301 1.19919 1.15314 1.22826 0.93786 0.96426 1.01771 1.23298 0.97140 1.00164 0.96719 0.92173 0.89129 0.92039 0.87000 0.87228 0.74097 0.89491 0.89946 0.86445 0.89225 0.90265 0.89155 0.83521 0.87346 0.90333 0.77446 0.91131 0.91185 0.91185 0.88024 0.92937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 11.01 113.37 1.25 1.44 16 2 O -0.41 -7.02 10.24 -129.94 -1.33 -8.35 16 3 C 0.04 0.41 6.42 71.24 0.46 0.87 16 4 C 0.50 8.71 7.91 87.66 0.69 9.40 16 5 O -0.58 -17.37 16.10 16.01 0.26 -17.11 16 6 N -0.70 -7.23 5.35 -439.53 -2.35 -9.58 16 7 C 0.12 1.73 4.24 45.63 0.19 1.92 16 8 C -0.10 -0.94 7.59 30.88 0.23 -0.71 16 9 C -0.09 -1.37 1.11 -52.31 -0.06 -1.43 16 10 C -0.12 -1.82 7.41 30.88 0.23 -1.59 16 11 C 0.06 1.19 4.14 45.55 0.19 1.38 16 12 N -0.68 -19.85 6.18 -492.27 -3.04 -22.89 16 13 C 0.06 1.92 6.01 85.56 0.51 2.43 16 14 C 0.45 20.47 7.82 87.66 0.69 21.16 16 15 O -0.62 -34.77 15.78 -3.07 -0.05 -34.82 16 16 N -0.59 -28.19 5.09 -306.98 -1.56 -29.76 16 17 C -0.33 -19.66 10.16 84.04 0.85 -18.81 16 18 H 0.05 3.83 7.39 -2.91 -0.02 3.81 16 19 C -0.01 -0.79 5.50 84.92 0.47 -0.33 16 20 N -0.93 -56.82 13.96 21.66 0.30 -56.51 16 21 Si 0.97 38.93 27.74 68.60 1.90 40.84 16 22 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 23 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 24 H -0.23 -7.73 6.52 99.48 0.65 -7.08 16 25 C -0.11 -2.22 7.64 30.88 0.24 -1.98 16 26 C -0.13 -2.02 7.64 30.88 0.24 -1.79 16 27 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 28 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 29 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 30 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.42 0.81 8.73 -92.71 -0.81 0.00 16 33 H 0.09 1.80 7.47 -2.38 -0.02 1.78 16 34 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 35 H 0.12 0.48 8.12 -2.39 -0.02 0.46 16 36 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.09 1.49 7.86 -2.39 -0.02 1.47 16 39 H 0.35 10.71 8.25 -89.69 -0.74 9.98 16 40 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 41 H 0.08 1.92 8.13 -2.39 -0.02 1.90 16 42 H 0.39 15.31 5.76 -92.71 -0.53 14.78 16 43 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 44 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.10 1.19 8.14 -2.39 -0.02 1.18 16 47 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -89.96 391.62 -0.84 -90.80 By element: Atomic # 1 Polarization: 36.56 SS G_CDS: -1.14 Total: 35.42 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: 6.18 Total: 11.97 kcal Atomic # 7 Polarization: -112.09 SS G_CDS: -6.66 Total: -118.74 kcal Atomic # 8 Polarization: -59.16 SS G_CDS: -1.12 Total: -60.28 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 1.90 Total: 40.84 kcal Total: -89.96 -0.84 -90.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120475636.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.093 kcal (2) G-P(sol) polarization free energy of solvation -89.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds