Wall clock time and date at job start Fri Apr 10 2020 18:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47480 * 2 1 4 4 C 1.50699 * 109.47258 * 239.99450 * 2 1 3 5 5 O 1.21276 * 120.00588 * 240.00482 * 4 2 1 6 6 N 1.34776 * 119.99541 * 60.00317 * 4 2 1 7 7 C 1.46506 * 119.99834 * 180.02562 * 6 4 2 8 8 C 1.53004 * 109.46934 * 180.02562 * 7 6 4 9 9 N 1.46901 * 109.46820 * 179.97438 * 8 7 6 10 10 C 1.46901 * 110.99706 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.47103 * 180.02562 * 10 9 8 12 12 O 1.21297 * 119.99738 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00017 * 180.02562 * 11 10 9 14 14 C 1.37102 * 119.99792 * 179.97438 * 13 11 10 15 15 H 1.08003 * 119.99788 * 0.02562 * 14 13 11 16 16 C 1.38946 * 119.99685 * 179.97438 * 14 13 11 17 17 N 1.31407 * 120.00522 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99815 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46772 * 90.00244 * 18 16 14 20 20 H 1.48497 * 109.47321 * 210.00577 * 18 16 14 21 21 H 1.48503 * 109.47286 * 330.00641 * 18 16 14 22 22 C 1.53004 * 109.46983 * 120.00041 * 2 1 3 23 23 C 1.54270 * 110.48468 * 299.99973 * 22 2 1 24 24 C 1.53869 * 106.63967 * 217.73631 * 23 22 2 25 25 C 1.54268 * 106.60115 * 359.97438 * 24 23 22 26 26 C 1.54895 * 104.19476 * 23.60777 * 25 24 23 27 27 H 1.08999 * 109.47149 * 300.00047 * 1 2 3 28 28 H 1.09002 * 109.47271 * 60.00104 * 1 2 3 29 29 H 1.08999 * 109.47311 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47059 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.46784 * 300.00194 * 3 2 1 32 32 H 1.08999 * 109.46968 * 59.99842 * 3 2 1 33 33 H 0.97001 * 120.00467 * 359.97438 * 6 4 2 34 34 H 1.08998 * 109.46986 * 299.99394 * 7 6 4 35 35 H 1.08996 * 109.47194 * 59.99822 * 7 6 4 36 36 H 1.08996 * 109.47304 * 300.00005 * 8 7 6 37 37 H 1.09007 * 109.46905 * 60.00079 * 8 7 6 38 38 H 1.00903 * 110.99833 * 56.05207 * 9 8 7 39 39 H 1.08994 * 109.47490 * 300.00001 * 10 9 8 40 40 H 1.09005 * 109.47146 * 60.00681 * 10 9 8 41 41 H 0.96991 * 120.00189 * 359.97438 * 13 11 10 42 42 H 0.97000 * 120.00568 * 180.02562 * 17 16 14 43 43 H 1.08997 * 110.53944 * 62.61063 * 22 2 1 44 44 H 1.09002 * 110.03399 * 98.42629 * 23 22 2 45 45 H 1.08995 * 110.02943 * 337.04529 * 23 22 2 46 46 H 1.08999 * 110.03405 * 119.26051 * 24 23 22 47 47 H 1.09001 * 110.03705 * 240.64196 * 24 23 22 48 48 H 1.08997 * 110.48788 * 142.28685 * 25 24 23 49 49 H 1.09001 * 110.48482 * 264.93365 * 25 24 23 50 50 H 1.09001 * 110.75082 * 80.37254 * 26 25 24 51 51 H 1.08991 * 110.75596 * 203.55944 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7295 -1.6966 -1.1191 6 7 1.7068 -0.2501 -2.4545 7 6 2.1946 -0.9411 -3.6507 8 6 1.6853 -0.2194 -4.8999 9 7 2.1750 -0.9119 -6.0993 10 6 1.7041 -0.2457 -7.3210 11 6 2.2247 -0.9831 -8.5278 12 8 2.9201 -1.9665 -8.3843 13 7 1.9185 -0.5491 -9.7665 14 6 2.3926 -1.2197 -10.8644 15 1 3.0111 -2.0958 -10.7366 16 6 2.0765 -0.7726 -12.1414 17 7 1.3236 0.2931 -12.2970 18 14 2.7219 -1.6866 -13.6374 19 1 1.7492 -2.7366 -14.0335 20 1 2.9044 -0.7320 -14.7601 21 1 4.0249 -2.3180 -13.3076 22 6 2.0399 -0.7213 1.2493 23 6 1.5386 -0.0123 2.5244 24 6 2.6886 -0.0758 3.5448 25 6 3.8493 -0.8219 2.8550 26 6 3.5836 -0.6219 1.3422 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.1488 0.5384 -2.5436 34 1 3.2846 -0.9415 -3.6508 35 1 1.8309 -1.9686 -3.6505 36 1 0.5953 -0.2185 -4.9000 37 1 2.0495 0.8081 -4.8999 38 1 1.9050 -1.8841 -6.0911 39 1 0.6143 -0.2458 -7.3379 40 1 2.0678 0.7817 -7.3378 41 1 1.3628 0.2375 -9.8813 42 1 1.1026 0.6050 -13.1885 43 1 1.7247 -1.7647 1.2439 44 1 0.6618 -0.5269 2.9175 45 1 1.2934 1.0262 2.3023 46 1 3.0020 0.9319 3.8174 47 1 2.3696 -0.6204 4.4336 48 1 4.8061 -0.3817 3.1357 49 1 3.8265 -1.8815 3.1095 50 1 3.9271 0.3599 1.0162 51 1 4.0602 -1.4096 0.7588 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129624384.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:33 Heat of formation + Delta-G solvation = -96.118211 kcal Electronic energy + Delta-G solvation = -27319.778871 eV Core-core repulsion = 23445.904895 eV Total energy + Delta-G solvation = -3873.873976 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.84427 -38.48871 -38.20799 -36.24773 -34.90883 -34.19152 -33.67142 -31.24591 -29.45137 -29.15225 -27.90826 -27.70001 -26.09964 -24.28560 -23.41603 -22.12595 -20.94041 -20.54986 -19.30568 -18.83673 -17.91928 -17.30322 -16.50701 -16.21139 -15.88701 -15.72487 -15.32197 -15.23935 -14.59946 -14.44830 -14.31209 -14.05802 -13.85909 -13.77257 -13.44376 -13.25828 -13.08072 -12.67843 -12.49629 -12.34732 -12.18126 -11.93584 -11.79982 -11.52862 -11.49996 -11.45071 -11.41618 -11.28567 -11.18772 -11.03703 -10.80037 -10.62300 -10.60540 -10.39690 -10.22840 -9.75794 -9.52111 -9.19785 -8.51344 -8.13869 -7.97595 -6.42875 -3.83740 2.50765 2.89994 3.17530 3.26356 3.32719 3.88859 4.07983 4.14490 4.21298 4.31620 4.41853 4.56228 4.64344 4.67217 4.80929 4.92751 5.00172 5.09370 5.16731 5.19116 5.20256 5.25355 5.28862 5.33310 5.36290 5.38321 5.45220 5.49036 5.52194 5.65564 5.68528 5.71593 5.72870 5.78866 5.84182 5.88800 5.91308 5.94694 6.04165 6.12300 6.21587 6.23225 6.28898 7.09158 7.32159 7.54391 7.56056 8.04998 8.08132 8.59796 9.16745 9.52613 10.04017 10.74810 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.040585 B = 0.001617 C = 0.001584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.737079 B =17312.682317 C =17670.744510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.075 4.075 3 C -0.147 4.147 4 C 0.522 3.478 5 O -0.532 6.532 6 N -0.728 5.728 7 C 0.120 3.880 8 C 0.050 3.950 9 N -0.665 5.665 10 C 0.052 3.948 11 C 0.440 3.560 12 O -0.582 6.582 13 N -0.563 5.563 14 C -0.300 4.300 15 H 0.103 0.897 16 C 0.023 3.977 17 N -0.902 5.902 18 Si 0.931 3.069 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.269 1.269 22 C -0.066 4.066 23 C -0.123 4.123 24 C -0.124 4.124 25 C -0.126 4.126 26 C -0.123 4.123 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.398 0.602 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.032 0.968 37 H 0.076 0.924 38 H 0.352 0.648 39 H 0.045 0.955 40 H 0.087 0.913 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.080 0.920 44 H 0.061 0.939 45 H 0.069 0.931 46 H 0.061 0.939 47 H 0.060 0.940 48 H 0.062 0.938 49 H 0.063 0.937 50 H 0.067 0.933 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.277 5.988 29.592 30.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.078 4.078 3 C -0.204 4.204 4 C 0.308 3.692 5 O -0.408 6.408 6 N -0.381 5.381 7 C -0.004 4.004 8 C -0.080 4.080 9 N -0.298 5.298 10 C -0.080 4.080 11 C 0.225 3.775 12 O -0.466 6.466 13 N -0.200 5.200 14 C -0.430 4.430 15 H 0.121 0.879 16 C -0.179 4.179 17 N -0.543 5.543 18 Si 0.758 3.242 19 H -0.204 1.204 20 H -0.209 1.209 21 H -0.194 1.194 22 C -0.084 4.084 23 C -0.161 4.161 24 C -0.162 4.162 25 C -0.163 4.163 26 C -0.160 4.160 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.232 0.768 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.050 0.950 37 H 0.095 0.905 38 H 0.172 0.828 39 H 0.063 0.937 40 H 0.105 0.895 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.098 0.902 44 H 0.080 0.920 45 H 0.088 0.912 46 H 0.079 0.921 47 H 0.079 0.921 48 H 0.081 0.919 49 H 0.082 0.918 50 H 0.086 0.914 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.748 5.009 29.563 30.110 hybrid contribution -1.378 0.301 -1.050 1.758 sum -4.126 5.310 28.513 29.295 Atomic orbital electron populations 1.21888 0.92554 1.02768 1.02725 1.20787 0.96998 0.96615 0.93378 1.22033 1.02195 0.93524 1.02660 1.20499 0.80007 0.84436 0.84277 1.90699 1.37347 1.26138 1.86627 1.45942 1.54065 1.32239 1.05815 1.21273 1.00543 0.96041 0.82530 1.22081 0.97094 0.98976 0.89897 1.59948 1.63454 1.06871 0.99574 1.21670 0.97502 0.99012 0.89843 1.19780 0.86088 0.87579 0.84055 1.90536 1.41719 1.28557 1.85782 1.41852 1.46077 1.27790 1.04253 1.19720 1.29171 1.10648 0.83416 0.87874 1.25261 0.96943 0.96570 0.99131 1.69607 1.37124 1.23523 1.24077 0.85849 0.79366 0.78790 0.80237 1.20419 1.20915 1.19377 1.21780 0.95909 0.99262 0.91492 1.22321 0.98050 1.00878 0.94829 1.22119 0.95586 1.00370 0.98082 1.22362 0.97950 1.00313 0.95725 1.22707 0.95088 1.02465 0.95784 0.91163 0.92156 0.92025 0.91409 0.92176 0.91002 0.76796 0.90250 0.91444 0.94998 0.90527 0.82819 0.93741 0.89474 0.77461 0.91869 0.90182 0.91971 0.91224 0.92055 0.92149 0.91933 0.91791 0.91429 0.90274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 8.14 37.16 0.30 -0.52 16 2 C -0.07 -0.55 0.42 -155.66 -0.07 -0.62 16 3 C -0.15 -0.86 7.76 37.16 0.29 -0.57 16 4 C 0.52 5.55 6.26 -10.99 -0.07 5.48 16 5 O -0.53 -7.79 14.44 5.56 0.08 -7.70 16 6 N -0.73 -6.70 5.34 -60.29 -0.32 -7.02 16 7 C 0.12 1.37 5.93 -4.04 -0.02 1.35 16 8 C 0.05 0.56 5.80 -3.82 -0.02 0.54 16 9 N -0.67 -10.54 6.13 -115.05 -0.70 -11.24 16 10 C 0.05 0.90 6.17 -4.97 -0.03 0.87 16 11 C 0.44 10.36 7.82 -10.98 -0.09 10.28 16 12 O -0.58 -15.91 15.78 5.54 0.09 -15.83 16 13 N -0.56 -14.23 5.29 -10.96 -0.06 -14.29 16 14 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 15 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 16 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 17 N -0.90 -24.43 13.05 55.50 0.72 -23.70 16 18 Si 0.93 21.06 29.55 -169.99 -5.02 16.03 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 22 C -0.07 -0.53 1.81 -88.92 -0.16 -0.69 16 23 C -0.12 -0.75 5.14 -25.61 -0.13 -0.88 16 24 C -0.12 -0.76 6.80 -25.62 -0.17 -0.94 16 25 C -0.13 -0.92 6.83 -25.07 -0.17 -1.09 16 26 C -0.12 -1.09 5.46 -24.70 -0.13 -1.22 16 27 H 0.07 0.32 7.08 -51.93 -0.37 -0.05 16 28 H 0.06 0.29 7.56 -51.93 -0.39 -0.10 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.46 6.02 -51.93 -0.31 0.15 16 31 H 0.06 0.29 7.57 -51.93 -0.39 -0.10 16 32 H 0.07 0.34 6.12 -51.93 -0.32 0.02 16 33 H 0.40 2.59 7.31 -40.82 -0.30 2.29 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.35 5.80 8.43 -39.29 -0.33 5.47 16 39 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 42 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 43 H 0.08 0.77 8.06 -51.93 -0.42 0.36 16 44 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.07 0.36 5.48 -51.93 -0.28 0.07 16 46 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.07 0.57 5.64 -51.93 -0.29 0.27 16 51 H 0.08 0.89 7.00 -51.93 -0.36 0.53 16 LS Contribution 397.75 15.07 5.99 5.99 Total: -1.00 -32.92 397.75 -8.62 -41.55 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -8.68 Total: 12.24 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -0.72 Total: 3.97 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: -0.36 Total: -56.25 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: 0.17 Total: -23.53 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.92 -8.62 -41.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129624384.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.573 kcal (2) G-P(sol) polarization free energy of solvation -32.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds