Wall clock time and date at job start Fri Apr 10 2020 18:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47480 * 2 1 4 4 C 1.50699 * 109.47258 * 239.99450 * 2 1 3 5 5 O 1.21276 * 120.00588 * 240.00482 * 4 2 1 6 6 N 1.34776 * 119.99541 * 60.00317 * 4 2 1 7 7 C 1.46506 * 119.99834 * 180.02562 * 6 4 2 8 8 C 1.53004 * 109.46934 * 180.02562 * 7 6 4 9 9 N 1.46901 * 109.46820 * 179.97438 * 8 7 6 10 10 C 1.46901 * 110.99706 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.47103 * 180.02562 * 10 9 8 12 12 O 1.21297 * 119.99738 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00017 * 180.02562 * 11 10 9 14 14 C 1.37102 * 119.99792 * 179.97438 * 13 11 10 15 15 H 1.08003 * 119.99788 * 0.02562 * 14 13 11 16 16 C 1.38946 * 119.99685 * 179.97438 * 14 13 11 17 17 N 1.31407 * 120.00522 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99815 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46772 * 90.00244 * 18 16 14 20 20 H 1.48497 * 109.47321 * 210.00577 * 18 16 14 21 21 H 1.48503 * 109.47286 * 330.00641 * 18 16 14 22 22 C 1.53004 * 109.46983 * 120.00041 * 2 1 3 23 23 C 1.54270 * 110.48468 * 299.99973 * 22 2 1 24 24 C 1.53869 * 106.63967 * 217.73631 * 23 22 2 25 25 C 1.54268 * 106.60115 * 359.97438 * 24 23 22 26 26 C 1.54895 * 104.19476 * 23.60777 * 25 24 23 27 27 H 1.08999 * 109.47149 * 300.00047 * 1 2 3 28 28 H 1.09002 * 109.47271 * 60.00104 * 1 2 3 29 29 H 1.08999 * 109.47311 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47059 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.46784 * 300.00194 * 3 2 1 32 32 H 1.08999 * 109.46968 * 59.99842 * 3 2 1 33 33 H 0.97001 * 120.00467 * 359.97438 * 6 4 2 34 34 H 1.08998 * 109.46986 * 299.99394 * 7 6 4 35 35 H 1.08996 * 109.47194 * 59.99822 * 7 6 4 36 36 H 1.08996 * 109.47304 * 300.00005 * 8 7 6 37 37 H 1.09007 * 109.46905 * 60.00079 * 8 7 6 38 38 H 1.00903 * 110.99833 * 56.05207 * 9 8 7 39 39 H 1.08994 * 109.47490 * 300.00001 * 10 9 8 40 40 H 1.09005 * 109.47146 * 60.00681 * 10 9 8 41 41 H 0.96991 * 120.00189 * 359.97438 * 13 11 10 42 42 H 0.97000 * 120.00568 * 180.02562 * 17 16 14 43 43 H 1.08997 * 110.53944 * 62.61063 * 22 2 1 44 44 H 1.09002 * 110.03399 * 98.42629 * 23 22 2 45 45 H 1.08995 * 110.02943 * 337.04529 * 23 22 2 46 46 H 1.08999 * 110.03405 * 119.26051 * 24 23 22 47 47 H 1.09001 * 110.03705 * 240.64196 * 24 23 22 48 48 H 1.08997 * 110.48788 * 142.28685 * 25 24 23 49 49 H 1.09001 * 110.48482 * 264.93365 * 25 24 23 50 50 H 1.09001 * 110.75082 * 80.37254 * 26 25 24 51 51 H 1.08991 * 110.75596 * 203.55944 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7295 -1.6966 -1.1191 6 7 1.7068 -0.2501 -2.4545 7 6 2.1946 -0.9411 -3.6507 8 6 1.6853 -0.2194 -4.8999 9 7 2.1750 -0.9119 -6.0993 10 6 1.7041 -0.2457 -7.3210 11 6 2.2247 -0.9831 -8.5278 12 8 2.9201 -1.9665 -8.3843 13 7 1.9185 -0.5491 -9.7665 14 6 2.3926 -1.2197 -10.8644 15 1 3.0111 -2.0958 -10.7366 16 6 2.0765 -0.7726 -12.1414 17 7 1.3236 0.2931 -12.2970 18 14 2.7219 -1.6866 -13.6374 19 1 1.7492 -2.7366 -14.0335 20 1 2.9044 -0.7320 -14.7601 21 1 4.0249 -2.3180 -13.3076 22 6 2.0399 -0.7213 1.2493 23 6 1.5386 -0.0123 2.5244 24 6 2.6886 -0.0758 3.5448 25 6 3.8493 -0.8219 2.8550 26 6 3.5836 -0.6219 1.3422 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.1488 0.5384 -2.5436 34 1 3.2846 -0.9415 -3.6508 35 1 1.8309 -1.9686 -3.6505 36 1 0.5953 -0.2185 -4.9000 37 1 2.0495 0.8081 -4.8999 38 1 1.9050 -1.8841 -6.0911 39 1 0.6143 -0.2458 -7.3379 40 1 2.0678 0.7817 -7.3378 41 1 1.3628 0.2375 -9.8813 42 1 1.1026 0.6050 -13.1885 43 1 1.7247 -1.7647 1.2439 44 1 0.6618 -0.5269 2.9175 45 1 1.2934 1.0262 2.3023 46 1 3.0020 0.9319 3.8174 47 1 2.3696 -0.6204 4.4336 48 1 4.8061 -0.3817 3.1357 49 1 3.8265 -1.8815 3.1095 50 1 3.9271 0.3599 1.0162 51 1 4.0602 -1.4096 0.7588 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129624384.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:32 Heat of formation + Delta-G solvation = -120.457960 kcal Electronic energy + Delta-G solvation = -27320.834321 eV Core-core repulsion = 23445.904895 eV Total energy + Delta-G solvation = -3874.929427 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.59210 -40.17553 -39.08164 -37.41990 -36.01390 -35.61591 -34.84861 -33.27263 -30.58431 -29.71924 -28.55857 -28.15800 -27.63601 -25.76560 -24.34411 -23.08948 -21.67784 -21.18218 -21.10186 -19.93259 -19.52526 -18.09733 -17.67255 -17.30489 -17.22477 -16.62207 -16.38034 -16.23964 -16.07323 -15.76253 -15.38506 -15.12824 -14.98180 -14.68174 -14.42784 -14.34248 -14.05067 -13.68320 -13.52671 -13.32299 -13.17992 -12.99893 -12.92923 -12.68262 -12.60292 -12.43921 -12.40961 -12.32338 -12.12580 -11.99129 -11.89410 -11.80955 -11.51602 -11.40414 -11.23492 -11.11317 -10.60470 -10.37095 -10.10415 -10.02182 -9.39582 -8.47410 -5.96133 1.37738 1.41908 1.54474 1.67484 2.03631 2.05460 2.30484 3.01665 3.19919 3.49043 3.58099 3.66128 3.74673 3.86883 3.98413 4.09478 4.10617 4.17957 4.31164 4.33934 4.45124 4.49808 4.56724 4.60643 4.64181 4.74284 4.77012 4.82762 4.84393 4.88489 4.91703 4.93219 4.97821 5.03287 5.12741 5.19365 5.21172 5.28055 5.36399 5.39165 5.40751 5.46879 5.55721 5.61957 5.83957 6.06470 6.30442 6.56692 6.59702 7.12134 7.28700 7.55449 8.11247 8.69810 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.040585 B = 0.001617 C = 0.001584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.737079 B =17312.682317 C =17670.744510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.068 4.068 3 C -0.146 4.146 4 C 0.515 3.485 5 O -0.581 6.581 6 N -0.714 5.714 7 C 0.128 3.872 8 C 0.060 3.940 9 N -0.687 5.687 10 C 0.068 3.932 11 C 0.434 3.566 12 O -0.626 6.626 13 N -0.571 5.571 14 C -0.337 4.337 15 H 0.077 0.923 16 C -0.011 4.011 17 N -0.918 5.918 18 Si 0.992 3.008 19 H -0.271 1.271 20 H -0.270 1.270 21 H -0.275 1.275 22 C -0.067 4.067 23 C -0.117 4.117 24 C -0.122 4.122 25 C -0.127 4.127 26 C -0.125 4.125 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.415 0.585 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.093 0.907 38 H 0.345 0.655 39 H 0.073 0.927 40 H 0.109 0.891 41 H 0.398 0.602 42 H 0.278 0.722 43 H 0.054 0.946 44 H 0.069 0.931 45 H 0.087 0.913 46 H 0.073 0.927 47 H 0.066 0.934 48 H 0.067 0.933 49 H 0.054 0.946 50 H 0.073 0.927 51 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.021 8.430 30.478 32.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.071 4.071 3 C -0.203 4.203 4 C 0.303 3.697 5 O -0.460 6.460 6 N -0.367 5.367 7 C 0.003 3.997 8 C -0.070 4.070 9 N -0.320 5.320 10 C -0.064 4.064 11 C 0.222 3.778 12 O -0.513 6.513 13 N -0.209 5.209 14 C -0.466 4.466 15 H 0.095 0.905 16 C -0.211 4.211 17 N -0.559 5.559 18 Si 0.816 3.184 19 H -0.196 1.196 20 H -0.194 1.194 21 H -0.200 1.200 22 C -0.086 4.086 23 C -0.154 4.154 24 C -0.159 4.159 25 C -0.164 4.164 26 C -0.162 4.162 27 H 0.109 0.891 28 H 0.094 0.906 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.110 0.890 33 H 0.252 0.748 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.112 0.888 38 H 0.164 0.836 39 H 0.091 0.909 40 H 0.127 0.873 41 H 0.232 0.768 42 H 0.088 0.912 43 H 0.073 0.927 44 H 0.087 0.913 45 H 0.106 0.894 46 H 0.092 0.908 47 H 0.084 0.916 48 H 0.086 0.914 49 H 0.073 0.927 50 H 0.091 0.909 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.537 7.514 30.460 31.700 hybrid contribution -0.800 -0.494 -1.283 1.591 sum -5.337 7.020 29.177 30.481 Atomic orbital electron populations 1.21915 0.90792 1.02514 1.04514 1.20796 0.98220 0.97063 0.90999 1.22062 1.01450 0.92271 1.04468 1.21245 0.79119 0.83917 0.85452 1.90688 1.39554 1.28429 1.87321 1.45781 1.53736 1.32427 1.04769 1.21011 0.99067 0.95807 0.83765 1.22069 0.98466 0.98940 0.87480 1.59917 1.64618 1.06840 1.00580 1.21527 0.98842 0.98758 0.87255 1.20945 0.84637 0.87005 0.85214 1.90506 1.43478 1.30654 1.86629 1.41907 1.46480 1.27983 1.04495 1.19668 1.30648 1.11101 0.85208 0.90477 1.26010 0.96714 0.97203 1.01142 1.69658 1.37152 1.24003 1.25089 0.84941 0.78483 0.77944 0.77038 1.19596 1.19423 1.19994 1.21751 0.95224 0.98387 0.93211 1.22303 0.98108 1.01613 0.93377 1.22125 0.94853 1.00839 0.98108 1.22367 0.99087 1.00176 0.94814 1.22663 0.95810 1.01388 0.96356 0.89143 0.90616 0.93339 0.92667 0.90627 0.88963 0.74764 0.92732 0.92947 0.92472 0.88821 0.83644 0.90897 0.87254 0.76824 0.91246 0.92734 0.91258 0.89425 0.90838 0.91551 0.91417 0.92693 0.90881 0.93817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 8.14 71.98 0.59 -0.68 16 2 C -0.07 -0.91 0.42 -52.93 -0.02 -0.93 16 3 C -0.15 -1.32 7.76 71.98 0.56 -0.76 16 4 C 0.52 10.96 6.26 87.66 0.55 11.51 16 5 O -0.58 -18.10 14.44 -3.02 -0.04 -18.15 16 6 N -0.71 -12.29 5.34 -463.05 -2.47 -14.76 16 7 C 0.13 2.90 5.93 86.38 0.51 3.41 16 8 C 0.06 1.22 5.80 86.30 0.50 1.72 16 9 N -0.69 -21.04 6.13 -517.91 -3.17 -24.21 16 10 C 0.07 2.23 6.17 85.56 0.53 2.75 16 11 C 0.43 20.58 7.82 87.66 0.69 21.27 16 12 O -0.63 -35.19 15.78 -3.08 -0.05 -35.23 16 13 N -0.57 -29.12 5.29 -306.97 -1.62 -30.74 16 14 C -0.34 -19.19 9.68 84.04 0.81 -18.38 16 15 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 16 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 17 N -0.92 -49.07 13.05 21.66 0.28 -48.79 16 18 Si 0.99 42.96 29.55 68.60 2.03 44.99 16 19 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 20 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 21 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 22 C -0.07 -1.05 1.81 -9.69 -0.02 -1.07 16 23 C -0.12 -1.16 5.14 31.32 0.16 -1.00 16 24 C -0.12 -1.28 6.80 31.32 0.21 -1.07 16 25 C -0.13 -1.86 6.83 31.67 0.22 -1.64 16 26 C -0.12 -2.30 5.46 31.91 0.17 -2.12 16 27 H 0.09 0.49 7.08 -2.39 -0.02 0.47 16 28 H 0.07 0.46 7.56 -2.39 -0.02 0.44 16 29 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.05 0.66 6.02 -2.39 -0.01 0.65 16 31 H 0.07 0.46 7.57 -2.39 -0.02 0.45 16 32 H 0.09 0.49 6.12 -2.39 -0.01 0.48 16 33 H 0.41 4.22 7.31 -92.71 -0.68 3.54 16 34 H 0.05 1.51 8.14 -2.39 -0.02 1.50 16 35 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 38 H 0.35 11.38 8.43 -89.69 -0.76 10.63 16 39 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.11 3.12 8.14 -2.38 -0.02 3.10 16 41 H 0.40 18.99 7.90 -92.71 -0.73 18.26 16 42 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 43 H 0.05 1.13 8.06 -2.39 -0.02 1.11 16 44 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.09 0.57 5.48 -2.39 -0.01 0.56 16 46 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 48 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 49 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 50 H 0.07 1.23 5.64 -2.39 -0.01 1.22 16 51 H 0.04 1.10 7.00 -2.39 -0.02 1.08 16 Total: -1.00 -74.71 397.75 -0.34 -75.05 By element: Atomic # 1 Polarization: 40.16 SS G_CDS: -1.21 Total: 38.95 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: 5.92 Total: 12.90 kcal Atomic # 7 Polarization: -111.52 SS G_CDS: -6.99 Total: -118.50 kcal Atomic # 8 Polarization: -53.29 SS G_CDS: -0.09 Total: -53.38 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -74.71 -0.34 -75.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129624384.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.410 kcal (2) G-P(sol) polarization free energy of solvation -74.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds