Wall clock time and date at job start Fri Apr 10 2020 18:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50696 * 108.79799 * 2 1 4 4 O 1.21291 * 119.99883 * 118.55559 * 3 2 1 5 5 N 1.34779 * 120.00328 * 298.56418 * 3 2 1 6 6 C 1.46499 * 120.00050 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.46841 * 179.97438 * 6 5 3 8 8 N 1.46906 * 109.46952 * 179.97438 * 7 6 5 9 9 C 1.46897 * 110.99591 * 180.02562 * 8 7 6 10 10 C 1.50709 * 109.46548 * 180.02562 * 9 8 7 11 11 O 1.21284 * 120.00193 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99522 * 180.02562 * 10 9 8 13 13 C 1.37100 * 119.99996 * 179.97438 * 12 10 9 14 14 H 1.07999 * 119.99704 * 359.97438 * 13 12 10 15 15 C 1.38950 * 120.00236 * 179.97438 * 13 12 10 16 16 N 1.31409 * 119.99845 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00035 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46753 * 60.00424 * 17 15 13 19 19 H 1.48499 * 109.47145 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47258 * 300.00685 * 17 15 13 21 21 C 1.54248 * 108.89334 * 241.44259 * 2 1 3 22 22 C 1.50476 * 108.52488 * 159.26814 * 21 2 1 23 23 C 1.54061 * 112.50196 * 94.14853 * 22 21 2 24 24 C 1.54076 * 112.81691 * 318.28597 * 23 22 21 25 25 C 1.50473 * 112.49469 * 318.28258 * 24 23 22 26 26 C 1.45546 * 108.89610 * 118.56393 * 2 1 3 27 27 H 1.09001 * 109.46685 * 301.44088 * 1 2 3 28 28 H 1.09000 * 109.46831 * 61.43488 * 1 2 3 29 29 H 1.08991 * 109.47720 * 181.43794 * 1 2 3 30 30 H 0.97000 * 119.99765 * 359.97438 * 5 3 2 31 31 H 1.08998 * 109.47061 * 299.99516 * 6 5 3 32 32 H 1.09009 * 109.47070 * 59.99815 * 6 5 3 33 33 H 1.08998 * 109.47398 * 299.99922 * 7 6 5 34 34 H 1.09009 * 109.46939 * 60.00347 * 7 6 5 35 35 H 1.00896 * 110.99855 * 303.96025 * 8 7 6 36 36 H 1.09001 * 109.47414 * 300.00083 * 9 8 7 37 37 H 1.09000 * 109.47143 * 60.00621 * 9 8 7 38 38 H 0.97003 * 120.00347 * 359.97438 * 12 10 9 39 39 H 0.97004 * 119.99921 * 179.97438 * 16 15 13 40 40 H 1.08999 * 109.62878 * 278.97435 * 21 2 1 41 41 H 1.08993 * 109.62768 * 39.56068 * 21 2 1 42 42 H 1.09003 * 108.87444 * 333.36987 * 22 21 2 43 43 H 1.09000 * 108.87638 * 214.93107 * 22 21 2 44 44 H 1.08997 * 108.81642 * 197.42430 * 23 22 21 45 45 H 1.08999 * 108.81386 * 79.14549 * 23 22 21 46 46 H 1.08998 * 108.87551 * 197.50492 * 24 23 22 47 47 H 1.09003 * 108.87551 * 79.06185 * 24 23 22 48 48 H 1.08999 * 109.62748 * 334.44410 * 25 24 23 49 49 H 1.08997 * 109.62546 * 213.86492 * 25 24 23 50 50 H 1.09003 * 108.89162 * 303.43479 * 26 2 1 51 51 H 1.08996 * 108.89491 * 61.92938 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0156 1.4266 0.0000 4 8 2.6863 1.8389 0.9226 5 7 1.7044 2.2444 -1.0251 6 6 2.1760 3.6314 -1.0248 7 6 1.6881 4.3363 -2.2921 8 7 2.1605 5.7273 -2.2915 9 6 1.7094 6.4369 -3.4960 10 6 2.2126 7.8570 -3.4603 11 8 2.8815 8.2401 -2.5240 12 7 1.9193 8.7013 -4.4691 13 6 2.3765 9.9934 -4.4365 14 1 2.9715 10.3347 -3.6022 15 6 2.0745 10.8638 -5.4766 16 7 1.3502 10.4486 -6.4914 17 14 2.6970 12.6244 -5.4318 18 1 4.1813 12.6236 -5.3842 19 1 2.2407 13.3419 -6.6493 20 1 2.1635 13.3076 -4.2260 21 6 2.0294 -0.6976 -1.2818 22 6 3.4467 -0.2637 -1.5410 23 6 4.4802 -1.2411 -0.9493 24 6 4.0933 -1.7414 0.4556 25 6 3.5393 -0.6451 1.3248 26 6 2.0013 -0.6584 1.2094 27 1 -0.3633 0.5361 0.8768 28 1 -0.3633 0.4914 -0.9026 29 1 -0.3634 -1.0272 0.0258 30 1 1.1682 1.9146 -1.7631 31 1 1.7853 4.1478 -0.1480 32 1 3.2657 3.6447 -0.9987 33 1 2.0792 3.8197 -3.1686 34 1 0.5984 4.3230 -2.3185 35 1 1.8645 6.2093 -1.4560 36 1 2.1006 5.9353 -4.3812 37 1 0.6200 6.4378 -3.5306 38 1 1.3846 8.3949 -5.2182 39 1 1.1391 11.0563 -7.2174 40 1 1.9965 -1.7787 -1.1469 41 1 1.3992 -0.4114 -2.1237 42 1 3.6002 0.7213 -1.1002 43 1 3.6030 -0.1943 -2.6176 44 1 5.4456 -0.7385 -0.8900 45 1 4.5735 -2.0993 -1.6147 46 1 4.9772 -2.1602 0.9366 47 1 3.3431 -2.5259 0.3564 48 1 3.9234 0.3180 0.9888 49 1 3.8303 -0.8172 2.3610 50 1 1.5780 -0.1502 2.0758 51 1 1.6565 -1.6924 1.2057 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129646795.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:35 Heat of formation + Delta-G solvation = -90.206804 kcal Electronic energy + Delta-G solvation = -27946.446411 eV Core-core repulsion = 24072.828773 eV Total energy + Delta-G solvation = -3873.617638 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.48114 -38.38721 -37.82259 -36.23893 -34.61689 -34.14372 -33.73748 -32.33073 -31.24249 -29.32876 -28.03194 -26.13916 -25.15461 -24.21911 -23.54508 -22.65664 -21.91091 -19.88526 -19.31934 -19.23002 -17.91655 -17.12354 -16.42423 -16.16088 -16.00175 -15.77703 -15.44689 -14.82259 -14.64453 -14.56837 -14.41543 -13.99777 -13.86016 -13.48009 -13.29437 -13.17580 -13.03561 -12.92786 -12.67012 -12.50399 -12.41065 -12.22057 -11.92777 -11.65309 -11.52648 -11.46087 -11.39618 -11.01889 -10.97111 -10.84715 -10.65416 -10.61136 -10.45315 -10.44671 -10.22330 -9.67972 -9.51145 -9.15171 -8.51291 -8.13768 -7.97608 -6.42760 -3.83620 2.48230 2.91325 3.19946 3.25585 3.30341 3.88932 4.06616 4.17704 4.25939 4.34334 4.42796 4.61336 4.77247 4.80503 4.82978 4.91681 4.94997 4.99391 5.04398 5.17197 5.20810 5.23070 5.25283 5.31574 5.38537 5.48391 5.53910 5.56949 5.66599 5.71475 5.75945 5.82938 5.84367 5.88648 5.90163 5.93108 5.95310 5.98184 6.01954 6.11405 6.20950 6.26725 6.41759 7.09255 7.31951 7.54263 7.56134 8.04800 8.07878 8.59845 9.16679 9.52600 10.04057 10.74854 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.029607 B = 0.001806 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.484937 B =15501.920087 C =15574.334338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.073 4.073 3 C 0.525 3.475 4 O -0.533 6.533 5 N -0.729 5.729 6 C 0.120 3.880 7 C 0.050 3.950 8 N -0.665 5.665 9 C 0.052 3.948 10 C 0.440 3.560 11 O -0.582 6.582 12 N -0.563 5.563 13 C -0.300 4.300 14 H 0.103 0.897 15 C 0.022 3.978 16 N -0.902 5.902 17 Si 0.932 3.068 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.274 1.274 21 C -0.103 4.103 22 C -0.130 4.130 23 C -0.115 4.115 24 C -0.119 4.119 25 C -0.126 4.126 26 C -0.098 4.098 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.398 0.602 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.032 0.968 35 H 0.352 0.648 36 H 0.087 0.913 37 H 0.045 0.955 38 H 0.392 0.608 39 H 0.272 0.728 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.055 0.945 47 H 0.057 0.943 48 H 0.091 0.909 49 H 0.059 0.941 50 H 0.065 0.935 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.409 -27.548 8.242 28.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.077 4.077 3 C 0.312 3.688 4 O -0.409 6.409 5 N -0.381 5.381 6 C -0.004 4.004 7 C -0.080 4.080 8 N -0.298 5.298 9 C -0.080 4.080 10 C 0.225 3.775 11 O -0.466 6.466 12 N -0.200 5.200 13 C -0.430 4.430 14 H 0.121 0.879 15 C -0.180 4.180 16 N -0.543 5.543 17 Si 0.759 3.241 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.199 1.199 21 C -0.141 4.141 22 C -0.168 4.168 23 C -0.153 4.153 24 C -0.157 4.157 25 C -0.164 4.164 26 C -0.136 4.136 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.232 0.768 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.050 0.950 35 H 0.172 0.828 36 H 0.105 0.895 37 H 0.063 0.937 38 H 0.225 0.775 39 H 0.082 0.918 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.075 0.925 48 H 0.109 0.891 49 H 0.078 0.922 50 H 0.084 0.916 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.917 -27.002 9.104 28.559 hybrid contribution -1.319 0.699 -0.827 1.706 sum -3.236 -26.303 8.277 27.763 Atomic orbital electron populations 1.21984 0.92708 1.02960 1.02584 1.19816 0.97112 0.92409 0.98324 1.20483 0.79386 0.87390 0.81541 1.90693 1.38252 1.76506 1.35482 1.46001 1.55752 1.12292 1.24084 1.21268 1.00721 0.80509 0.97929 1.22080 0.97270 0.90892 0.97789 1.59940 1.63823 1.00761 1.05321 1.21670 0.97690 0.94699 0.93964 1.19777 0.85991 0.86614 0.85127 1.90532 1.42751 1.77644 1.35677 1.41851 1.47421 1.10750 1.19946 1.19663 1.30596 0.85996 1.06697 0.87939 1.25269 0.96973 1.00487 0.95228 1.69603 1.38064 1.37056 1.09619 0.85905 0.79222 0.81509 0.77510 1.19849 1.20982 1.19906 1.21439 0.96434 1.01087 0.95148 1.21494 0.94338 1.00005 1.00955 1.21890 0.98598 0.98692 0.96135 1.21394 1.00628 0.98421 0.95229 1.21516 0.94601 1.00811 0.99423 1.20329 0.96975 1.00012 0.96244 0.92017 0.92041 0.91318 0.76784 0.91457 0.90302 0.90525 0.95013 0.82829 0.89487 0.93744 0.77455 0.91815 0.90404 0.91242 0.91391 0.91806 0.92281 0.92441 0.92576 0.92451 0.89113 0.92214 0.91625 0.91633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 8.12 37.16 0.30 -0.53 16 2 C -0.07 -0.54 0.54 -158.53 -0.09 -0.63 16 3 C 0.53 5.46 3.69 -10.99 -0.04 5.42 16 4 O -0.53 -7.63 13.67 5.55 0.08 -7.55 16 5 N -0.73 -6.56 5.03 -60.29 -0.30 -6.86 16 6 C 0.12 1.35 5.93 -4.04 -0.02 1.32 16 7 C 0.05 0.56 5.80 -3.82 -0.02 0.54 16 8 N -0.67 -10.48 6.13 -115.05 -0.70 -11.19 16 9 C 0.05 0.90 6.17 -4.97 -0.03 0.87 16 10 C 0.44 10.35 7.82 -10.98 -0.09 10.26 16 11 O -0.58 -15.90 15.78 5.55 0.09 -15.81 16 12 N -0.56 -14.22 5.29 -10.96 -0.06 -14.28 16 13 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 14 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 15 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 16 N -0.90 -24.44 13.05 55.50 0.72 -23.71 16 17 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 20 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 21 C -0.10 -0.63 4.43 -27.34 -0.12 -0.75 16 22 C -0.13 -1.00 5.11 -27.44 -0.14 -1.14 16 23 C -0.12 -0.87 5.85 -25.62 -0.15 -1.02 16 24 C -0.12 -0.89 5.31 -27.43 -0.15 -1.03 16 25 C -0.13 -1.16 5.20 -27.35 -0.14 -1.30 16 26 C -0.10 -0.79 3.57 -29.60 -0.11 -0.89 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.29 7.56 -51.93 -0.39 -0.10 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.40 2.57 7.64 -40.82 -0.31 2.26 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 1.04 8.14 -51.92 -0.42 0.62 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.03 0.32 8.14 -51.92 -0.42 -0.11 16 35 H 0.35 5.78 8.43 -39.29 -0.33 5.45 16 36 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 37 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.39 9.41 7.90 -40.82 -0.32 9.08 16 39 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 40 H 0.08 0.42 6.98 -51.93 -0.36 0.06 16 41 H 0.07 0.33 7.82 -51.93 -0.41 -0.08 16 42 H 0.07 0.68 4.75 -51.93 -0.25 0.43 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.06 0.37 6.63 -51.93 -0.34 0.03 16 48 H 0.09 1.07 4.54 -51.93 -0.24 0.84 16 49 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.07 0.60 8.03 -51.93 -0.42 0.19 16 51 H 0.07 0.42 7.47 -51.93 -0.39 0.03 16 LS Contribution 391.59 15.07 5.90 5.90 Total: -1.00 -32.67 391.59 -9.10 -41.77 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: -8.76 Total: 12.59 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -1.03 Total: 3.09 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: -0.34 Total: -56.04 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: 0.16 Total: -23.36 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.67 -9.10 -41.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129646795.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.435 kcal (2) G-P(sol) polarization free energy of solvation -32.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds