Wall clock time and date at job start Fri Apr 10 2020 18:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50696 * 108.79799 * 2 1 4 4 O 1.21291 * 119.99883 * 118.55559 * 3 2 1 5 5 N 1.34779 * 120.00328 * 298.56418 * 3 2 1 6 6 C 1.46499 * 120.00050 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.46841 * 179.97438 * 6 5 3 8 8 N 1.46906 * 109.46952 * 179.97438 * 7 6 5 9 9 C 1.46897 * 110.99591 * 180.02562 * 8 7 6 10 10 C 1.50709 * 109.46548 * 180.02562 * 9 8 7 11 11 O 1.21284 * 120.00193 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99522 * 180.02562 * 10 9 8 13 13 C 1.37100 * 119.99996 * 179.97438 * 12 10 9 14 14 H 1.07999 * 119.99704 * 359.97438 * 13 12 10 15 15 C 1.38950 * 120.00236 * 179.97438 * 13 12 10 16 16 N 1.31409 * 119.99845 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00035 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46753 * 60.00424 * 17 15 13 19 19 H 1.48499 * 109.47145 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47258 * 300.00685 * 17 15 13 21 21 C 1.54248 * 108.89334 * 241.44259 * 2 1 3 22 22 C 1.50476 * 108.52488 * 159.26814 * 21 2 1 23 23 C 1.54061 * 112.50196 * 94.14853 * 22 21 2 24 24 C 1.54076 * 112.81691 * 318.28597 * 23 22 21 25 25 C 1.50473 * 112.49469 * 318.28258 * 24 23 22 26 26 C 1.45546 * 108.89610 * 118.56393 * 2 1 3 27 27 H 1.09001 * 109.46685 * 301.44088 * 1 2 3 28 28 H 1.09000 * 109.46831 * 61.43488 * 1 2 3 29 29 H 1.08991 * 109.47720 * 181.43794 * 1 2 3 30 30 H 0.97000 * 119.99765 * 359.97438 * 5 3 2 31 31 H 1.08998 * 109.47061 * 299.99516 * 6 5 3 32 32 H 1.09009 * 109.47070 * 59.99815 * 6 5 3 33 33 H 1.08998 * 109.47398 * 299.99922 * 7 6 5 34 34 H 1.09009 * 109.46939 * 60.00347 * 7 6 5 35 35 H 1.00896 * 110.99855 * 303.96025 * 8 7 6 36 36 H 1.09001 * 109.47414 * 300.00083 * 9 8 7 37 37 H 1.09000 * 109.47143 * 60.00621 * 9 8 7 38 38 H 0.97003 * 120.00347 * 359.97438 * 12 10 9 39 39 H 0.97004 * 119.99921 * 179.97438 * 16 15 13 40 40 H 1.08999 * 109.62878 * 278.97435 * 21 2 1 41 41 H 1.08993 * 109.62768 * 39.56068 * 21 2 1 42 42 H 1.09003 * 108.87444 * 333.36987 * 22 21 2 43 43 H 1.09000 * 108.87638 * 214.93107 * 22 21 2 44 44 H 1.08997 * 108.81642 * 197.42430 * 23 22 21 45 45 H 1.08999 * 108.81386 * 79.14549 * 23 22 21 46 46 H 1.08998 * 108.87551 * 197.50492 * 24 23 22 47 47 H 1.09003 * 108.87551 * 79.06185 * 24 23 22 48 48 H 1.08999 * 109.62748 * 334.44410 * 25 24 23 49 49 H 1.08997 * 109.62546 * 213.86492 * 25 24 23 50 50 H 1.09003 * 108.89162 * 303.43479 * 26 2 1 51 51 H 1.08996 * 108.89491 * 61.92938 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0156 1.4266 0.0000 4 8 2.6863 1.8389 0.9226 5 7 1.7044 2.2444 -1.0251 6 6 2.1760 3.6314 -1.0248 7 6 1.6881 4.3363 -2.2921 8 7 2.1605 5.7273 -2.2915 9 6 1.7094 6.4369 -3.4960 10 6 2.2126 7.8570 -3.4603 11 8 2.8815 8.2401 -2.5240 12 7 1.9193 8.7013 -4.4691 13 6 2.3765 9.9934 -4.4365 14 1 2.9715 10.3347 -3.6022 15 6 2.0745 10.8638 -5.4766 16 7 1.3502 10.4486 -6.4914 17 14 2.6970 12.6244 -5.4318 18 1 4.1813 12.6236 -5.3842 19 1 2.2407 13.3419 -6.6493 20 1 2.1635 13.3076 -4.2260 21 6 2.0294 -0.6976 -1.2818 22 6 3.4467 -0.2637 -1.5410 23 6 4.4802 -1.2411 -0.9493 24 6 4.0933 -1.7414 0.4556 25 6 3.5393 -0.6451 1.3248 26 6 2.0013 -0.6584 1.2094 27 1 -0.3633 0.5361 0.8768 28 1 -0.3633 0.4914 -0.9026 29 1 -0.3634 -1.0272 0.0258 30 1 1.1682 1.9146 -1.7631 31 1 1.7853 4.1478 -0.1480 32 1 3.2657 3.6447 -0.9987 33 1 2.0792 3.8197 -3.1686 34 1 0.5984 4.3230 -2.3185 35 1 1.8645 6.2093 -1.4560 36 1 2.1006 5.9353 -4.3812 37 1 0.6200 6.4378 -3.5306 38 1 1.3846 8.3949 -5.2182 39 1 1.1391 11.0563 -7.2174 40 1 1.9965 -1.7787 -1.1469 41 1 1.3992 -0.4114 -2.1237 42 1 3.6002 0.7213 -1.1002 43 1 3.6030 -0.1943 -2.6176 44 1 5.4456 -0.7385 -0.8900 45 1 4.5735 -2.0993 -1.6147 46 1 4.9772 -2.1602 0.9366 47 1 3.3431 -2.5259 0.3564 48 1 3.9234 0.3180 0.9888 49 1 3.8303 -0.8172 2.3610 50 1 1.5780 -0.1502 2.0758 51 1 1.6565 -1.6924 1.2057 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129646795.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:35 Heat of formation + Delta-G solvation = -114.404374 kcal Electronic energy + Delta-G solvation = -27947.495697 eV Core-core repulsion = 24072.828773 eV Total energy + Delta-G solvation = -3874.666923 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.19563 -40.17736 -38.64573 -37.37074 -36.01896 -35.40778 -34.72474 -33.28398 -32.97890 -30.47381 -28.55318 -27.71273 -25.77439 -25.71421 -24.28565 -23.55109 -22.80014 -21.10518 -20.59779 -19.95295 -19.90947 -18.02096 -17.59362 -17.27642 -17.11678 -16.75668 -16.42963 -16.25997 -15.89831 -15.56169 -15.48537 -15.22957 -15.01741 -14.76935 -14.29706 -14.08989 -13.90625 -13.63688 -13.54174 -13.45898 -13.31975 -13.24156 -12.98051 -12.93260 -12.84261 -12.60440 -12.44878 -12.41683 -12.23689 -12.12588 -11.54958 -11.51213 -11.40930 -11.29121 -11.21502 -11.04881 -10.52227 -10.36714 -10.02795 -10.02148 -9.39099 -8.47250 -5.95938 1.39545 1.41654 1.52410 1.69603 2.04303 2.07989 2.30615 3.01792 3.19983 3.47866 3.63303 3.68156 3.81057 3.87683 4.03568 4.11006 4.19945 4.23425 4.31219 4.32181 4.35512 4.45645 4.46517 4.49829 4.59825 4.65051 4.77756 4.83541 4.90085 4.91867 4.95986 5.00878 5.02610 5.08914 5.24171 5.31669 5.32101 5.33272 5.36261 5.38045 5.40337 5.45403 5.53191 5.68845 5.84274 6.06590 6.30828 6.58880 6.60076 7.12034 7.32018 7.55456 8.11227 8.69740 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.029607 B = 0.001806 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.484937 B =15501.920087 C =15574.334338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.067 4.067 3 C 0.521 3.479 4 O -0.580 6.580 5 N -0.715 5.715 6 C 0.129 3.871 7 C 0.060 3.940 8 N -0.687 5.687 9 C 0.068 3.932 10 C 0.434 3.566 11 O -0.626 6.626 12 N -0.572 5.572 13 C -0.336 4.336 14 H 0.077 0.923 15 C -0.012 4.012 16 N -0.918 5.918 17 Si 0.992 3.008 18 H -0.273 1.273 19 H -0.269 1.269 20 H -0.272 1.272 21 C -0.098 4.098 22 C -0.130 4.130 23 C -0.117 4.117 24 C -0.115 4.115 25 C -0.128 4.128 26 C -0.097 4.097 27 H 0.047 0.953 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.414 0.586 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.093 0.907 34 H 0.057 0.943 35 H 0.345 0.655 36 H 0.109 0.891 37 H 0.073 0.927 38 H 0.398 0.602 39 H 0.278 0.722 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.039 0.961 43 H 0.071 0.929 44 H 0.041 0.959 45 H 0.074 0.926 46 H 0.055 0.945 47 H 0.076 0.924 48 H 0.059 0.941 49 H 0.051 0.949 50 H 0.046 0.954 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.147 -29.639 6.572 30.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.070 4.070 3 C 0.310 3.690 4 O -0.460 6.460 5 N -0.368 5.368 6 C 0.004 3.996 7 C -0.069 4.069 8 N -0.319 5.319 9 C -0.064 4.064 10 C 0.222 3.778 11 O -0.513 6.513 12 N -0.209 5.209 13 C -0.465 4.465 14 H 0.095 0.905 15 C -0.212 4.212 16 N -0.559 5.559 17 Si 0.816 3.184 18 H -0.198 1.198 19 H -0.194 1.194 20 H -0.198 1.198 21 C -0.136 4.136 22 C -0.168 4.168 23 C -0.154 4.154 24 C -0.153 4.153 25 C -0.165 4.165 26 C -0.135 4.135 27 H 0.066 0.934 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.251 0.749 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.111 0.889 34 H 0.075 0.925 35 H 0.163 0.837 36 H 0.127 0.873 37 H 0.091 0.909 38 H 0.232 0.768 39 H 0.088 0.912 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.057 0.943 43 H 0.090 0.910 44 H 0.060 0.940 45 H 0.093 0.907 46 H 0.074 0.926 47 H 0.095 0.905 48 H 0.078 0.922 49 H 0.070 0.930 50 H 0.065 0.935 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.693 -29.134 7.386 30.282 hybrid contribution -0.732 1.313 -0.249 1.524 sum -4.425 -27.821 7.137 29.061 Atomic orbital electron populations 1.22003 0.90895 1.04377 1.02752 1.19839 0.98405 0.89936 0.98865 1.21164 0.78405 0.88668 0.80804 1.90679 1.40349 1.77582 1.37400 1.45824 1.55452 1.11157 1.24401 1.20984 0.99120 0.81792 0.97665 1.22067 0.98679 0.88191 0.97991 1.59909 1.64956 1.02612 1.04470 1.21526 0.99107 0.90366 0.95377 1.20944 0.84472 0.88800 0.83586 1.90501 1.44472 1.79139 1.37143 1.41912 1.47849 1.10399 1.20734 1.19620 1.32104 0.87891 1.06927 0.90473 1.26029 0.96721 1.03971 0.94506 1.69657 1.38080 1.38351 1.09816 0.84999 0.78533 0.76901 0.77964 1.19838 1.19353 1.19753 1.21479 0.95358 1.01858 0.94868 1.21497 0.95645 0.98548 1.01109 1.21907 0.97860 0.99146 0.96529 1.21358 1.01100 0.98031 0.94781 1.21465 0.95821 0.99918 0.99295 1.20353 0.95834 1.01286 0.96018 0.93360 0.90519 0.89198 0.74860 0.93004 0.92915 0.88880 0.92495 0.83660 0.87287 0.90899 0.76821 0.91242 0.88684 0.88949 0.94261 0.91016 0.93994 0.90726 0.92579 0.90522 0.92229 0.93002 0.93498 0.89125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 8.12 71.98 0.58 -0.65 16 2 C -0.07 -0.88 0.54 -54.78 -0.03 -0.91 16 3 C 0.52 10.80 3.69 87.66 0.32 11.13 16 4 O -0.58 -17.70 13.67 -3.06 -0.04 -17.74 16 5 N -0.72 -12.13 5.03 -463.04 -2.33 -14.46 16 6 C 0.13 2.91 5.93 86.38 0.51 3.42 16 7 C 0.06 1.22 5.80 86.30 0.50 1.72 16 8 N -0.69 -21.03 6.13 -517.90 -3.17 -24.21 16 9 C 0.07 2.23 6.17 85.56 0.53 2.76 16 10 C 0.43 20.59 7.82 87.66 0.69 21.27 16 11 O -0.63 -35.17 15.78 -3.04 -0.05 -35.22 16 12 N -0.57 -29.15 5.29 -306.98 -1.62 -30.78 16 13 C -0.34 -19.14 9.68 84.04 0.81 -18.32 16 14 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 15 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 16 N -0.92 -49.15 13.05 21.66 0.28 -48.86 16 17 Si 0.99 42.99 29.55 68.60 2.03 45.02 16 18 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 19 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 20 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 21 C -0.10 -0.88 4.43 30.20 0.13 -0.75 16 22 C -0.13 -1.81 5.11 30.14 0.15 -1.65 16 23 C -0.12 -1.63 5.85 31.32 0.18 -1.45 16 24 C -0.12 -1.59 5.31 30.14 0.16 -1.43 16 25 C -0.13 -2.39 5.20 30.20 0.16 -2.23 16 26 C -0.10 -1.48 3.57 28.74 0.10 -1.38 16 27 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.08 0.44 7.56 -2.39 -0.02 0.42 16 29 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.41 4.21 7.64 -92.71 -0.71 3.50 16 31 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 33 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 35 H 0.34 11.38 8.43 -89.70 -0.76 10.63 16 36 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 37 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.40 19.01 7.90 -92.71 -0.73 18.28 16 39 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 40 H 0.09 0.60 6.98 -2.39 -0.02 0.59 16 41 H 0.09 0.44 7.82 -2.39 -0.02 0.43 16 42 H 0.04 0.79 4.75 -2.39 -0.01 0.78 16 43 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.08 0.77 6.63 -2.39 -0.02 0.75 16 48 H 0.06 1.53 4.54 -2.39 -0.01 1.51 16 49 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 50 H 0.05 0.88 8.03 -2.39 -0.02 0.86 16 51 H 0.09 0.92 7.47 -2.39 -0.02 0.90 16 Total: -1.00 -74.41 391.59 -0.88 -75.29 By element: Atomic # 1 Polarization: 40.86 SS G_CDS: -1.25 Total: 39.61 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: 5.28 Total: 11.34 kcal Atomic # 7 Polarization: -111.47 SS G_CDS: -6.84 Total: -118.31 kcal Atomic # 8 Polarization: -52.87 SS G_CDS: -0.09 Total: -52.96 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -74.41 -0.88 -75.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129646795.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.113 kcal (2) G-P(sol) polarization free energy of solvation -74.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds