Wall clock time and date at job start Fri Apr 10 2020 18:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46997 * 2 1 4 4 C 1.52998 * 109.46997 * 180.02562 * 3 2 1 5 5 H 1.08993 * 110.43954 * 52.45355 * 4 3 2 6 6 C 1.54273 * 110.59734 * 289.83802 * 4 3 2 7 7 C 1.53871 * 106.59889 * 217.65362 * 6 4 3 8 8 C 1.54270 * 106.59935 * 0.02562 * 7 6 4 9 9 C 1.54885 * 104.19275 * 23.61033 * 8 7 6 10 10 H 1.08996 * 110.91896 * 80.44834 * 9 8 7 11 11 C 1.50701 * 110.75124 * 203.74351 * 9 8 7 12 12 O 1.21288 * 120.00292 * 113.32687 * 11 9 8 13 13 N 1.34777 * 120.00115 * 293.32597 * 11 9 8 14 14 C 1.46500 * 120.00376 * 180.02562 * 13 11 9 15 15 C 1.52997 * 109.47473 * 180.02562 * 14 13 11 16 16 N 1.46899 * 109.47254 * 179.97438 * 15 14 13 17 17 C 1.46904 * 111.00029 * 179.97438 * 16 15 14 18 18 C 1.50696 * 109.46800 * 180.02562 * 17 16 15 19 19 O 1.21289 * 120.00338 * 0.02562 * 18 17 16 20 20 N 1.34782 * 119.99855 * 180.02562 * 18 17 16 21 21 C 1.37091 * 120.00193 * 180.02562 * 20 18 17 22 22 H 1.07996 * 120.00199 * 359.97438 * 21 20 18 23 23 C 1.38954 * 119.99891 * 180.02562 * 21 20 18 24 24 N 1.31407 * 120.00269 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99666 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46964 * 89.99975 * 25 23 21 27 27 H 1.48502 * 109.46799 * 209.99679 * 25 23 21 28 28 H 1.48495 * 109.47300 * 329.99842 * 25 23 21 29 29 H 1.09007 * 109.47045 * 59.99901 * 1 2 3 30 30 H 1.09003 * 109.47582 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47694 * 300.00264 * 1 2 3 32 32 H 1.08994 * 109.47184 * 239.99965 * 2 1 3 33 33 H 1.08995 * 109.46729 * 119.99522 * 2 1 3 34 34 H 1.09004 * 109.47292 * 59.99905 * 3 2 1 35 35 H 1.08993 * 109.47307 * 299.99800 * 3 2 1 36 36 H 1.08996 * 110.03349 * 336.94599 * 6 4 3 37 37 H 1.09003 * 110.03187 * 98.32472 * 6 4 3 38 38 H 1.09007 * 110.03239 * 119.28600 * 7 6 4 39 39 H 1.09004 * 110.03510 * 240.66518 * 7 6 4 40 40 H 1.08996 * 110.48308 * 264.92870 * 8 7 6 41 41 H 1.09003 * 110.48466 * 142.28841 * 8 7 6 42 42 H 0.97004 * 120.00228 * 0.02562 * 13 11 9 43 43 H 1.09002 * 109.47129 * 59.99747 * 14 13 11 44 44 H 1.08998 * 109.46845 * 300.00553 * 14 13 11 45 45 H 1.09002 * 109.47153 * 59.99757 * 15 14 13 46 46 H 1.09001 * 109.46832 * 299.99948 * 15 14 13 47 47 H 1.00908 * 110.99847 * 56.04959 * 16 15 14 48 48 H 1.08995 * 109.47167 * 300.00240 * 17 16 15 49 49 H 1.09003 * 109.46442 * 60.00214 * 17 16 15 50 50 H 0.97000 * 119.99567 * 0.02562 * 20 18 17 51 51 H 0.96998 * 120.00361 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 1 3.9502 0.8202 -0.8107 6 6 4.1132 0.9522 1.3575 7 6 5.3608 1.7993 1.6635 8 6 5.5318 2.7752 0.4810 9 6 4.1116 2.8884 -0.1264 10 1 3.4973 3.5827 0.4470 11 6 4.1810 3.3085 -1.5720 12 8 3.8342 2.5403 -2.4442 13 7 4.6283 4.5379 -1.8958 14 6 4.6953 4.9466 -3.3010 15 6 5.2340 6.3757 -3.3915 16 7 5.3018 6.7852 -4.8007 17 6 5.8153 8.1558 -4.9265 18 6 5.8698 8.5400 -6.3827 19 8 5.5152 7.7500 -7.2320 20 7 6.3125 9.7615 -6.7412 21 6 6.3616 10.1112 -8.0659 22 1 6.0459 9.4079 -8.8222 23 6 6.8186 11.3703 -8.4355 24 7 7.2032 12.2260 -7.5153 25 14 6.8861 11.8466 -10.2405 26 1 5.5981 12.4710 -10.6362 27 1 7.9920 12.8140 -10.4561 28 1 7.1219 10.6337 -11.0641 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8932 -0.5137 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 1.9563 -0.8899 36 1 3.3629 1.0982 2.1345 37 1 4.3834 -0.1018 1.2930 38 1 5.2160 2.3565 2.5891 39 1 6.2371 1.1565 1.7482 40 1 6.2288 2.3684 -0.2516 41 1 5.8739 3.7476 0.8354 42 1 4.9060 5.1523 -1.1983 43 1 3.6982 4.9053 -3.7393 44 1 5.3588 4.2734 -3.8439 45 1 6.2313 6.4165 -2.9533 46 1 4.5708 7.0490 -2.8486 47 1 4.4015 6.6943 -5.2473 48 1 5.1556 8.8413 -4.3947 49 1 6.8164 8.2093 -4.4985 50 1 6.5964 10.3930 -6.0620 51 1 7.5225 13.1048 -7.7734 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130567247.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:37 Heat of formation + Delta-G solvation = -133.501174 kcal Electronic energy + Delta-G solvation = -26752.278706 eV Core-core repulsion = 22876.783683 eV Total energy + Delta-G solvation = -3875.495023 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.25317 -40.17273 -38.82002 -37.39741 -36.00371 -35.47298 -35.08621 -33.27692 -31.25289 -30.61925 -29.63807 -27.57369 -26.10249 -25.52663 -23.33415 -22.65572 -22.41931 -21.10869 -20.83949 -20.48683 -19.92475 -18.44187 -17.71247 -17.26755 -17.09335 -16.56938 -16.42835 -16.20116 -15.91303 -15.77913 -15.46091 -15.25329 -14.93309 -14.70766 -14.51723 -14.23637 -13.97294 -13.76440 -13.53414 -13.45046 -13.30352 -13.24880 -12.94591 -12.73413 -12.59376 -12.42950 -12.39208 -12.22083 -12.12533 -12.01585 -11.77615 -11.62225 -11.51658 -11.29132 -11.26597 -11.22540 -10.79168 -10.37468 -10.12623 -10.02225 -9.39636 -8.47448 -5.96108 1.37732 1.41898 1.54492 1.64538 2.03971 2.06236 2.30596 3.02471 3.19900 3.45699 3.54484 3.64922 3.74185 3.88302 4.08857 4.12286 4.19347 4.23514 4.31117 4.39170 4.45156 4.49321 4.50222 4.54318 4.57704 4.60711 4.65347 4.76700 4.78752 4.89439 4.94373 4.96509 4.98484 5.04345 5.11654 5.22927 5.25967 5.28988 5.35542 5.39736 5.40843 5.47067 5.51118 5.58813 5.83901 6.06443 6.30412 6.56471 6.59690 7.12132 7.27700 7.55411 8.11226 8.69788 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.027819 B = 0.001581 C = 0.001522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.254114 B =17708.139516 C =18389.749286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.106 4.106 4 C -0.075 4.075 5 H 0.056 0.944 6 C -0.116 4.116 7 C -0.120 4.120 8 C -0.110 4.110 9 C -0.106 4.106 10 H 0.125 0.875 11 C 0.514 3.486 12 O -0.585 6.585 13 N -0.714 5.714 14 C 0.128 3.872 15 C 0.060 3.940 16 N -0.687 5.687 17 C 0.068 3.932 18 C 0.434 3.566 19 O -0.626 6.626 20 N -0.571 5.571 21 C -0.337 4.337 22 H 0.077 0.923 23 C -0.011 4.011 24 N -0.918 5.918 25 Si 0.992 3.008 26 H -0.271 1.271 27 H -0.270 1.270 28 H -0.275 1.275 29 H 0.042 0.958 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.044 0.956 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.039 0.961 36 H 0.079 0.921 37 H 0.063 0.937 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.054 0.946 41 H 0.095 0.905 42 H 0.417 0.583 43 H 0.052 0.948 44 H 0.054 0.946 45 H 0.094 0.906 46 H 0.057 0.943 47 H 0.345 0.655 48 H 0.073 0.927 49 H 0.110 0.890 50 H 0.398 0.602 51 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.388 -16.980 27.007 32.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.144 4.144 4 C -0.094 4.094 5 H 0.075 0.925 6 C -0.154 4.154 7 C -0.158 4.158 8 C -0.148 4.148 9 C -0.127 4.127 10 H 0.143 0.857 11 C 0.302 3.698 12 O -0.464 6.464 13 N -0.367 5.367 14 C 0.003 3.997 15 C -0.069 4.069 16 N -0.320 5.320 17 C -0.064 4.064 18 C 0.222 3.778 19 O -0.513 6.513 20 N -0.209 5.209 21 C -0.466 4.466 22 H 0.095 0.905 23 C -0.211 4.211 24 N -0.559 5.559 25 Si 0.816 3.184 26 H -0.196 1.196 27 H -0.194 1.194 28 H -0.200 1.200 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.058 0.942 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.114 0.886 42 H 0.254 0.746 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.112 0.888 46 H 0.076 0.924 47 H 0.164 0.836 48 H 0.091 0.909 49 H 0.128 0.872 50 H 0.232 0.768 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.167 -18.125 25.705 32.052 hybrid contribution -0.428 1.366 -0.654 1.574 sum -6.595 -16.759 25.051 30.853 Atomic orbital electron populations 1.21778 0.95605 1.01871 1.01713 1.21498 0.96057 0.96630 1.01762 1.21592 0.94207 0.97185 1.01403 1.21844 0.95415 0.93944 0.98166 0.92538 1.22217 0.97734 0.99728 0.95672 1.22121 0.97963 0.97528 0.98175 1.22348 0.93349 1.01584 0.97551 1.22442 1.00439 0.99302 0.90507 0.85682 1.21201 0.75467 0.80927 0.92230 1.90705 1.49931 1.53458 1.52345 1.45790 1.66419 1.16004 1.08503 1.21014 1.00541 0.95575 0.82597 1.22067 1.02442 0.93977 0.88456 1.59919 1.33809 1.23341 1.14932 1.21526 1.02961 0.89963 0.91935 1.20942 0.82507 0.82278 0.92076 1.90503 1.54579 1.52057 1.54126 1.41909 1.57454 1.13478 1.08027 1.19667 1.42806 0.99614 0.84545 0.90476 1.26013 0.95903 0.95061 1.04099 1.69658 1.43466 1.07806 1.34968 0.84939 0.78375 0.77994 0.77085 1.19598 1.19420 1.19996 0.93837 0.92308 0.91843 0.93675 0.90776 0.90424 0.94234 0.90190 0.91785 0.89814 0.91393 0.92723 0.88630 0.74568 0.92924 0.92776 0.88797 0.92442 0.83641 0.90888 0.87249 0.76824 0.91245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.91 71.98 0.71 -1.25 16 2 C -0.12 -1.73 5.81 30.59 0.18 -1.55 16 3 C -0.11 -1.60 4.60 30.59 0.14 -1.46 16 4 C -0.07 -1.13 1.93 -9.71 -0.02 -1.15 16 5 H 0.06 1.22 7.44 -2.39 -0.02 1.20 16 6 C -0.12 -1.14 5.70 31.32 0.18 -0.96 16 7 C -0.12 -0.95 6.80 31.32 0.21 -0.73 16 8 C -0.11 -1.08 6.26 31.67 0.20 -0.88 16 9 C -0.11 -1.40 2.71 -10.24 -0.03 -1.43 16 10 H 0.13 1.09 8.06 -2.39 -0.02 1.07 16 11 C 0.51 10.85 7.13 87.66 0.62 11.48 16 12 O -0.58 -18.35 15.73 -3.05 -0.05 -18.40 16 13 N -0.71 -12.12 5.56 -463.06 -2.57 -14.70 16 14 C 0.13 2.88 5.93 86.38 0.51 3.39 16 15 C 0.06 1.22 5.80 86.30 0.50 1.72 16 16 N -0.69 -21.07 6.13 -517.93 -3.17 -24.25 16 17 C 0.07 2.23 6.17 85.55 0.53 2.76 16 18 C 0.43 20.59 7.82 87.65 0.69 21.28 16 19 O -0.63 -35.20 15.78 -3.06 -0.05 -35.25 16 20 N -0.57 -29.14 5.29 -306.99 -1.62 -30.76 16 21 C -0.34 -19.21 9.68 84.04 0.81 -18.39 16 22 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 23 C -0.01 -0.57 5.50 84.93 0.47 -0.11 16 24 N -0.92 -49.09 13.05 21.66 0.28 -48.81 16 25 Si 0.99 42.98 29.55 68.60 2.03 45.00 16 26 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 27 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 28 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 29 H 0.04 0.65 8.14 -2.38 -0.02 0.63 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.67 8.14 -2.38 -0.02 0.66 16 32 H 0.04 0.78 8.14 -2.39 -0.02 0.77 16 33 H 0.07 0.84 7.63 -2.39 -0.02 0.82 16 34 H 0.08 0.87 7.96 -2.38 -0.02 0.85 16 35 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.08 0.59 7.72 -2.39 -0.02 0.57 16 37 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.08 0.41 8.14 -2.38 -0.02 0.39 16 39 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 40 H 0.05 0.74 8.04 -2.39 -0.02 0.72 16 41 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.42 3.98 8.47 -92.71 -0.79 3.20 16 43 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.35 11.39 8.43 -89.69 -0.76 10.64 16 48 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 49 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 50 H 0.40 19.00 7.90 -92.71 -0.73 18.27 16 51 H 0.28 13.90 8.31 -92.71 -0.77 13.12 16 Total: -1.00 -74.82 413.40 -0.80 -75.62 By element: Atomic # 1 Polarization: 40.16 SS G_CDS: -1.35 Total: 38.81 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: 5.71 Total: 12.72 kcal Atomic # 7 Polarization: -111.42 SS G_CDS: -7.09 Total: -118.51 kcal Atomic # 8 Polarization: -53.55 SS G_CDS: -0.10 Total: -53.65 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.00 kcal Total: -74.82 -0.80 -75.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130567247.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.881 kcal (2) G-P(sol) polarization free energy of solvation -74.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds