Wall clock time and date at job start Fri Apr 10 2020 18:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 114.00384 * 2 1 4 4 C 1.52994 * 109.47574 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47401 * 180.02562 * 4 3 2 6 6 C 1.34815 * 126.59410 * 125.27104 * 5 4 3 7 7 C 1.36597 * 106.83486 * 180.10947 * 6 5 4 8 8 C 1.47524 * 125.77072 * 179.89715 * 7 6 5 9 9 O 1.21598 * 119.99666 * 359.71965 * 8 7 6 10 10 N 1.34771 * 120.00264 * 179.71505 * 8 7 6 11 11 C 1.46508 * 119.99837 * 180.02562 * 10 8 7 12 12 H 1.08994 * 109.47317 * 35.00152 * 11 10 8 13 13 C 1.52999 * 109.46657 * 274.99636 * 11 10 8 14 14 C 1.53002 * 109.46662 * 155.00121 * 11 10 8 15 15 C 1.53003 * 109.47269 * 294.99336 * 14 11 10 16 16 H 1.09000 * 109.46953 * 305.00936 * 15 14 11 17 17 C 1.52996 * 109.47332 * 185.00423 * 15 14 11 18 18 N 1.46505 * 109.46807 * 65.00478 * 15 14 11 19 19 C 1.36931 * 119.99788 * 205.00000 * 18 15 14 20 20 H 1.08002 * 120.00438 * 0.02562 * 19 18 15 21 21 C 1.38817 * 119.99680 * 179.72358 * 19 18 15 22 22 N 1.31614 * 119.99888 * 0.27479 * 21 19 18 23 23 Si 1.86803 * 119.99862 * 180.27671 * 21 19 18 24 24 H 1.48496 * 109.47141 * 59.99751 * 23 21 19 25 25 H 1.48490 * 109.47071 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46993 * 300.00028 * 23 21 19 27 27 N 1.34402 * 108.46124 * 359.63309 * 7 6 5 28 28 N 1.28760 * 109.52143 * 0.22750 * 27 7 6 29 29 H 1.08991 * 109.47124 * 59.99814 * 1 2 3 30 30 H 1.09000 * 109.47184 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46780 * 299.99737 * 1 2 3 32 32 H 1.09001 * 109.47065 * 59.99632 * 3 2 1 33 33 H 1.09002 * 109.46681 * 300.00444 * 3 2 1 34 34 H 1.09001 * 109.47520 * 59.99549 * 4 3 2 35 35 H 1.09002 * 109.47183 * 299.99774 * 4 3 2 36 36 H 1.07997 * 126.58415 * 359.96948 * 6 5 4 37 37 H 0.96999 * 120.00044 * 0.02562 * 10 8 7 38 38 H 1.09002 * 109.46944 * 60.00616 * 13 11 10 39 39 H 1.09010 * 109.46692 * 179.97438 * 13 11 10 40 40 H 1.08998 * 109.47359 * 299.99941 * 13 11 10 41 41 H 1.09000 * 109.46766 * 174.99852 * 14 11 10 42 42 H 1.08992 * 109.47398 * 54.99945 * 14 11 10 43 43 H 1.08998 * 109.47019 * 59.99816 * 17 15 14 44 44 H 1.08998 * 109.47099 * 180.02562 * 17 15 14 45 45 H 1.09002 * 109.46807 * 300.00318 * 17 15 14 46 46 H 0.97000 * 119.99792 * 24.99795 * 18 15 14 47 47 H 0.97005 * 119.99715 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 4.1314 2.5230 0.0000 6 6 5.0296 3.0024 0.8836 7 6 5.3069 4.2863 0.5088 8 6 6.2401 5.2018 1.1924 9 8 6.8371 4.8316 2.1850 10 7 6.4308 6.4483 0.7170 11 6 7.3580 7.3573 1.3957 12 1 8.1985 6.7886 1.7934 13 6 6.6318 8.0637 2.5422 14 6 7.8724 8.3983 0.3994 15 6 8.7045 7.7035 -0.6803 16 1 9.4979 7.1227 -0.2099 17 6 9.3216 8.7552 -1.6043 18 7 7.8439 6.8116 -1.4615 19 6 8.3846 5.7339 -2.1106 20 1 9.4453 5.5411 -2.0464 21 6 7.5683 4.8856 -2.8462 22 7 6.2755 5.1203 -2.9240 23 14 8.3046 3.4110 -3.7253 24 1 8.9515 2.5154 -2.7331 25 1 7.2306 2.6708 -4.4349 26 1 9.3172 3.8752 -4.7074 27 7 4.5903 4.5726 -0.5916 28 7 3.8815 3.5495 -0.9217 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 3.8568 0.6438 -0.8908 35 1 3.8575 0.6435 0.8891 36 1 5.4478 2.4736 1.7274 37 1 5.9543 6.7437 -0.0746 38 1 6.2654 7.3220 3.2519 39 1 7.3218 8.7397 3.0475 40 1 5.7914 8.6324 2.1444 41 1 8.4917 9.1269 0.9226 42 1 7.0270 8.9064 -0.0642 43 1 9.9618 9.4188 -1.0231 44 1 9.9140 8.2602 -2.3738 45 1 8.5281 9.3360 -2.0747 46 1 6.8912 6.9845 -1.5189 47 1 5.7052 4.5276 -3.4383 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134355686.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:23 Heat of formation + Delta-G solvation = 34.354264 kcal Electronic energy + Delta-G solvation = -28935.901773 eV Core-core repulsion = 24964.145164 eV Total energy + Delta-G solvation = -3971.756608 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.190 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.59660 -38.98262 -38.26355 -36.63235 -34.60563 -34.03945 -32.10411 -30.85493 -30.49641 -29.28303 -28.33363 -26.65586 -26.24105 -23.95390 -23.48793 -23.33380 -21.36604 -20.75360 -20.09217 -19.43527 -17.72457 -16.99041 -16.69206 -16.51179 -15.79212 -15.69787 -15.37438 -14.92654 -14.74005 -14.15473 -14.03002 -13.93054 -13.65582 -13.60762 -13.19377 -12.82154 -12.58711 -12.38253 -12.07810 -12.01576 -11.81361 -11.71206 -11.63383 -11.57075 -11.40574 -10.91335 -10.75444 -10.62950 -10.47375 -10.27525 -10.16622 -10.04874 -9.86269 -9.79418 -9.52547 -9.38679 -8.82549 -8.69923 -8.22504 -6.75805 -5.56362 -2.84750 1.62142 2.23647 2.52856 3.48703 3.53868 3.53931 3.55092 3.82743 4.13446 4.44041 4.61614 4.70789 4.80819 4.94971 5.02908 5.04169 5.13403 5.23480 5.32178 5.34333 5.41789 5.47772 5.53592 5.64231 5.72097 5.78135 5.87083 5.97721 6.04714 6.10591 6.22404 6.33653 6.38779 6.45666 6.53960 6.64854 6.65965 6.72112 6.80656 6.96206 7.15809 7.26453 7.85972 8.25012 8.57029 8.67608 8.96398 9.69073 10.23818 10.59431 11.62040 Molecular weight = 325.19amu Principal moments of inertia in cm(-1) A = 0.012108 B = 0.004192 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.020370 B = 6677.684690 C = 8337.972111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.390 6.390 3 C 0.052 3.948 4 C 0.130 3.870 5 N -0.376 5.376 6 C 0.079 3.921 7 C -0.089 4.089 8 C 0.616 3.384 9 O -0.567 6.567 10 N -0.680 5.680 11 C 0.150 3.850 12 H 0.084 0.916 13 C -0.162 4.162 14 C -0.134 4.134 15 C 0.170 3.830 16 H 0.046 0.954 17 C -0.163 4.163 18 N -0.714 5.714 19 C -0.242 4.242 20 H 0.062 0.938 21 C -0.001 4.001 22 N -0.901 5.901 23 Si 0.887 3.113 24 H -0.292 1.292 25 H -0.295 1.295 26 H -0.289 1.289 27 N -0.134 5.134 28 N -0.069 5.069 29 H 0.045 0.955 30 H 0.089 0.911 31 H 0.043 0.957 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.195 0.805 37 H 0.413 0.587 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.053 0.947 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.033 0.967 44 H 0.051 0.949 45 H 0.044 0.956 46 H 0.380 0.620 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.745 -2.764 10.042 13.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.309 6.309 3 C -0.026 4.026 4 C 0.008 3.992 5 N -0.163 5.163 6 C -0.077 4.077 7 C -0.227 4.227 8 C 0.401 3.599 9 O -0.447 6.447 10 N -0.331 5.331 11 C 0.045 3.955 12 H 0.102 0.898 13 C -0.221 4.221 14 C -0.172 4.172 15 C 0.060 3.940 16 H 0.064 0.936 17 C -0.223 4.223 18 N -0.358 5.358 19 C -0.373 4.373 20 H 0.080 0.920 21 C -0.199 4.199 22 N -0.547 5.547 23 Si 0.719 3.281 24 H -0.219 1.219 25 H -0.221 1.221 26 H -0.216 1.216 27 N -0.008 5.008 28 N -0.050 5.050 29 H 0.064 0.936 30 H 0.107 0.893 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.120 0.880 35 H 0.125 0.875 36 H 0.212 0.788 37 H 0.252 0.748 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.052 0.948 44 H 0.070 0.930 45 H 0.063 0.937 46 H 0.215 0.785 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.944 -2.941 9.401 13.305 hybrid contribution 0.366 -1.085 -0.328 1.191 sum -8.578 -4.026 9.072 13.118 Atomic orbital electron populations 1.22770 0.80054 1.02972 1.00425 1.87771 1.20486 1.26983 1.95622 1.22640 0.92335 0.85283 1.02310 1.21480 0.92686 0.79177 1.05884 1.50256 1.31416 1.13510 1.21078 1.23160 0.93099 0.95302 0.96171 1.21412 1.07176 0.95282 0.98829 1.16614 0.79814 0.81136 0.82333 1.90705 1.50264 1.76671 1.27056 1.45764 1.44152 1.12235 1.30958 1.20836 0.92346 0.90380 0.91930 0.89829 1.22214 1.00718 1.00444 0.98695 1.22213 1.00518 0.97336 0.97174 1.20257 0.92877 0.90632 0.90280 0.93632 1.22431 1.00087 0.99256 1.00568 1.42408 1.06425 1.28770 1.58201 1.18972 0.92470 1.02198 1.23706 0.92026 1.24592 0.95578 0.98620 1.01084 1.69589 1.01941 1.38747 1.44455 0.86595 0.77733 0.84014 0.79741 1.21929 1.22079 1.21605 1.74850 1.01510 1.18162 1.06265 1.82045 1.20966 0.90550 1.11441 0.93608 0.89284 0.93871 0.92479 0.91161 0.87979 0.87473 0.78834 0.74796 0.92411 0.92119 0.92754 0.90858 0.91694 0.94769 0.92958 0.93657 0.78491 0.93612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.39 -4.05 10.70 -35.23 -0.38 -4.43 16 3 C 0.05 0.55 6.14 37.15 0.23 0.78 16 4 C 0.13 1.46 6.91 -4.04 -0.03 1.44 16 5 N -0.38 -5.87 3.69 -61.06 -0.23 -6.10 16 6 C 0.08 1.28 11.27 -16.83 -0.19 1.09 16 7 C -0.09 -1.77 6.99 -83.55 -0.58 -2.35 16 8 C 0.62 12.68 7.78 -12.48 -0.10 12.58 16 9 O -0.57 -12.30 16.53 5.28 0.09 -12.22 16 10 N -0.68 -12.98 3.80 -54.85 -0.21 -13.19 16 11 C 0.15 2.48 2.57 -67.93 -0.17 2.30 16 12 H 0.08 1.53 7.58 -51.93 -0.39 1.14 16 13 C -0.16 -2.22 9.48 37.16 0.35 -1.86 16 14 C -0.13 -2.08 4.43 -26.73 -0.12 -2.20 16 15 C 0.17 3.26 2.89 -67.93 -0.20 3.07 16 16 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 17 C -0.16 -2.90 9.49 37.16 0.35 -2.55 16 18 N -0.71 -16.74 3.84 -53.42 -0.21 -16.95 16 19 C -0.24 -6.53 9.93 -15.06 -0.15 -6.68 16 20 H 0.06 1.69 7.83 -52.49 -0.41 1.28 16 21 C 0.00 -0.02 5.50 -17.43 -0.10 -0.12 16 22 N -0.90 -25.28 12.22 55.49 0.68 -24.60 16 23 Si 0.89 22.78 29.55 -169.99 -5.02 17.76 16 24 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 25 H -0.29 -7.72 7.11 56.52 0.40 -7.32 16 26 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 27 N -0.13 -2.85 11.20 32.85 0.37 -2.48 16 28 N -0.07 -1.36 13.65 60.35 0.82 -0.53 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.11 0.91 8.08 -51.93 -0.42 0.49 16 36 H 0.19 2.49 8.06 -52.49 -0.42 2.06 16 37 H 0.41 8.35 6.19 -40.82 -0.25 8.10 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.70 8.14 -51.92 -0.42 0.27 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.38 9.26 5.70 -40.82 -0.23 9.03 16 47 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 394.74 15.07 5.95 5.95 Total: -1.00 -32.25 394.74 -5.33 -37.58 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -7.61 Total: 12.34 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: 0.41 Total: 6.87 kcal Atomic # 7 Polarization: -65.08 SS G_CDS: 1.23 Total: -63.85 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.29 Total: -16.65 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.25 -5.33 -37.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134355686.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.935 kcal (2) G-P(sol) polarization free energy of solvation -32.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds