Wall clock time and date at job start Fri Apr 10 2020 18:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86801 * 120.00083 * 2 1 4 4 H 1.48498 * 109.47480 * 240.00087 * 3 2 1 5 5 H 1.48498 * 109.47128 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47361 * 119.99960 * 3 2 1 7 7 C 1.38952 * 120.00352 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00366 * 180.02562 * 7 2 1 9 9 N 1.37099 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.34780 * 120.00045 * 180.02562 * 9 7 2 11 11 O 1.21299 * 119.99646 * 0.02562 * 10 9 7 12 12 C 1.50689 * 120.00228 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.47226 * 180.02562 * 12 10 9 14 14 C 1.46904 * 110.99930 * 180.02562 * 13 12 10 15 15 C 1.53007 * 109.46800 * 179.97438 * 14 13 12 16 16 C 1.53003 * 109.46959 * 179.97438 * 15 14 13 17 17 C 1.52997 * 109.47129 * 180.02562 * 16 15 14 18 18 C 1.53003 * 109.47129 * 179.97438 * 17 16 15 19 19 C 1.53000 * 109.47236 * 179.97438 * 18 17 16 20 20 N 1.46499 * 109.46981 * 180.02562 * 19 18 17 21 21 C 1.34777 * 119.99553 * 180.02562 * 20 19 18 22 22 O 1.21278 * 120.00088 * 359.97438 * 21 20 19 23 23 C 1.50703 * 119.99745 * 179.97438 * 21 20 19 24 24 C 1.53781 * 113.61417 * 179.97438 * 23 21 20 25 25 C 1.53786 * 87.17350 * 139.93966 * 24 23 21 26 26 C 1.53782 * 113.61283 * 277.49692 * 23 21 20 27 27 H 0.96997 * 119.99687 * 359.97438 * 1 2 3 28 28 H 0.97003 * 120.00257 * 0.02562 * 9 7 2 29 29 H 1.09003 * 109.47253 * 59.99763 * 12 10 9 30 30 H 1.09001 * 109.47132 * 299.99894 * 12 10 9 31 31 H 1.00903 * 111.00293 * 303.94877 * 13 12 10 32 32 H 1.08994 * 109.47303 * 59.99867 * 14 13 12 33 33 H 1.09004 * 109.47030 * 299.99490 * 14 13 12 34 34 H 1.08994 * 109.47158 * 59.99953 * 15 14 13 35 35 H 1.08999 * 109.47497 * 299.99487 * 15 14 13 36 36 H 1.09000 * 109.47314 * 59.99619 * 16 15 14 37 37 H 1.09004 * 109.47011 * 299.99750 * 16 15 14 38 38 H 1.08994 * 109.47344 * 59.99810 * 17 16 15 39 39 H 1.09004 * 109.46699 * 299.99610 * 17 16 15 40 40 H 1.09000 * 109.47314 * 59.99287 * 18 17 16 41 41 H 1.08999 * 109.46658 * 299.99743 * 18 17 16 42 42 H 1.08994 * 109.47005 * 59.99952 * 19 18 17 43 43 H 1.09004 * 109.46932 * 299.99817 * 19 18 17 44 44 H 0.96993 * 120.00243 * 359.97438 * 20 19 18 45 45 H 1.08996 * 112.85169 * 48.79875 * 23 21 20 46 46 H 1.09002 * 113.61445 * 254.52965 * 24 23 21 47 47 H 1.09002 * 113.61408 * 25.34696 * 24 23 21 48 48 H 1.08993 * 113.61491 * 89.15923 * 25 24 23 49 49 H 1.09000 * 113.61138 * 220.06261 * 25 24 23 50 50 H 1.08997 * 113.61668 * 334.56418 * 26 23 21 51 51 H 1.08998 * 113.61674 * 105.38927 * 26 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6965 -1.2125 5 1 1.2832 2.7465 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2103 -3.5578 -0.0001 12 6 1.2439 -4.8629 -0.0011 13 7 2.1985 -5.9794 -0.0004 14 6 1.4982 -7.2708 -0.0015 15 6 2.5232 -8.4068 -0.0014 16 6 1.7938 -9.7518 -0.0019 17 6 2.8187 -10.8877 -0.0011 18 6 2.0894 -12.2327 -0.0010 19 6 3.1143 -13.3687 -0.0009 20 7 2.4159 -14.6565 -0.0014 21 6 3.1207 -15.8052 -0.0008 22 8 4.3331 -15.7728 -0.0004 23 6 2.4023 -17.1300 -0.0008 24 6 3.3473 -18.3432 -0.0008 25 6 2.3732 -19.0058 0.9878 26 6 1.9465 -17.5835 1.3961 27 1 -0.4849 0.8400 0.0004 28 1 0.3534 -2.3907 -0.0005 29 1 0.6175 -4.9204 -0.8914 30 1 0.6169 -4.9209 0.8886 31 1 2.8339 -5.9124 -0.7813 32 1 0.8743 -7.3450 -0.8922 33 1 0.8723 -7.3455 0.8878 34 1 3.1474 -8.3327 0.8890 35 1 3.1487 -8.3319 -0.8909 36 1 1.1692 -9.8260 -0.8921 37 1 1.1686 -9.8264 0.8879 38 1 3.4429 -10.8132 0.8893 39 1 3.4442 -10.8132 -0.8907 40 1 1.4648 -12.3074 -0.8912 41 1 1.4641 -12.3068 0.8887 42 1 3.7391 -13.2941 0.8891 43 1 3.7392 -13.2943 -0.8909 44 1 1.4463 -14.6824 -0.0014 45 1 1.6192 -17.1869 -0.7568 46 1 3.4054 -18.8514 -0.9633 47 1 4.3277 -18.1330 0.4268 48 1 1.5811 -19.5769 0.5038 49 1 2.8695 -19.5596 1.7847 50 1 2.5432 -17.1660 2.2071 51 1 0.8744 -17.4773 1.5615 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177730588.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:07 Heat of formation + Delta-G solvation = -87.112599 kcal Electronic energy + Delta-G solvation = -25350.656076 eV Core-core repulsion = 21477.172613 eV Total energy + Delta-G solvation = -3873.483463 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.68698 -38.31917 -38.11744 -37.03467 -35.84323 -34.37546 -33.76641 -31.61822 -31.15085 -28.59452 -27.09137 -26.17377 -25.67574 -24.10793 -22.77843 -21.69376 -21.28786 -21.04116 -19.80591 -19.17873 -17.88616 -17.83558 -16.57008 -16.46122 -16.16819 -15.94412 -15.65483 -15.10633 -14.89198 -14.59383 -14.41653 -14.24124 -13.74788 -13.56363 -13.46165 -13.25228 -13.00023 -12.93057 -12.75239 -12.58088 -12.27520 -11.92406 -11.72158 -11.69370 -11.54000 -11.48997 -11.20518 -11.10136 -11.07923 -10.98097 -10.96602 -10.86070 -10.63375 -10.43035 -10.19886 -10.06635 -9.50416 -9.48546 -8.43532 -8.02085 -7.93944 -6.40324 -3.81124 2.20726 2.74594 3.21354 3.26734 3.31401 3.92950 3.94442 4.02953 4.08885 4.17660 4.25867 4.26406 4.46263 4.52297 4.63098 4.77268 4.88687 4.97632 5.03074 5.11727 5.13798 5.18393 5.22833 5.25407 5.30146 5.33368 5.39591 5.43280 5.48053 5.51762 5.54919 5.64239 5.69367 5.74128 5.81068 5.85966 5.88462 5.95288 6.01477 6.02937 6.20351 6.24934 6.32139 7.05463 7.27511 7.56390 7.71231 7.81193 8.07920 8.63199 9.19343 9.56030 10.07841 10.77472 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.063188 B = 0.001104 C = 0.001092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.017581 B =25353.425072 C =25637.062774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.300 4.300 8 H 0.102 0.898 9 N -0.564 5.564 10 C 0.440 3.560 11 O -0.583 6.583 12 C 0.051 3.949 13 N -0.671 5.671 14 C 0.059 3.941 15 C -0.118 4.118 16 C -0.116 4.116 17 C -0.117 4.117 18 C -0.131 4.131 19 C 0.116 3.884 20 N -0.731 5.731 21 C 0.520 3.480 22 O -0.540 6.540 23 C -0.140 4.140 24 C -0.119 4.119 25 C -0.142 4.142 26 C -0.124 4.124 27 H 0.272 0.728 28 H 0.392 0.608 29 H 0.042 0.958 30 H 0.085 0.915 31 H 0.348 0.652 32 H 0.024 0.976 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.401 0.599 45 H 0.112 0.888 46 H 0.071 0.929 47 H 0.095 0.905 48 H 0.083 0.917 49 H 0.073 0.927 50 H 0.085 0.915 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.210 -35.631 -0.145 35.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.201 5.201 10 C 0.226 3.774 11 O -0.468 6.468 12 C -0.082 4.082 13 N -0.303 5.303 14 C -0.071 4.071 15 C -0.156 4.156 16 C -0.154 4.154 17 C -0.155 4.155 18 C -0.168 4.168 19 C -0.008 4.008 20 N -0.382 5.382 21 C 0.306 3.694 22 O -0.416 6.416 23 C -0.162 4.162 24 C -0.156 4.156 25 C -0.180 4.180 26 C -0.161 4.161 27 H 0.082 0.918 28 H 0.225 0.775 29 H 0.060 0.940 30 H 0.103 0.897 31 H 0.167 0.833 32 H 0.042 0.958 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.235 0.765 45 H 0.130 0.870 46 H 0.090 0.910 47 H 0.113 0.887 48 H 0.102 0.898 49 H 0.091 0.909 50 H 0.103 0.897 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.552 -35.399 0.535 35.437 hybrid contribution -1.187 0.968 -0.964 1.810 sum -2.739 -34.431 -0.429 34.543 Atomic orbital electron populations 1.69604 1.05947 1.28241 1.50631 1.25252 0.95620 0.99691 0.97302 0.85919 0.78766 0.80451 0.79093 1.19911 1.20971 1.19870 1.19670 0.93372 0.82287 1.47679 0.87975 1.41858 1.09180 1.04588 1.64437 1.19839 0.88403 0.84759 0.84410 1.90521 1.13785 1.87090 1.55362 1.21665 0.94397 0.91045 1.01105 1.60084 1.18854 1.00086 1.51310 1.21982 0.95781 0.89190 1.00118 1.21560 0.98260 0.92819 1.02960 1.21531 0.97946 0.93870 1.02055 1.21502 0.98354 0.92798 1.02823 1.21816 0.98145 0.94124 1.02757 1.21432 0.95257 0.81531 1.02555 1.46079 1.10376 1.05971 1.75789 1.20578 0.87869 0.85516 0.75444 1.90706 1.14076 1.87637 1.49190 1.22818 1.00472 0.92340 1.00522 1.22807 0.98490 0.94035 1.00301 1.22873 0.99471 0.96047 0.99599 1.22861 1.01655 0.96686 0.94935 0.91837 0.77465 0.93980 0.89678 0.83260 0.95805 0.91288 0.90890 0.92029 0.92095 0.91845 0.91422 0.91556 0.91307 0.91234 0.91418 0.91430 0.76550 0.86967 0.90985 0.88679 0.89818 0.90859 0.89668 0.90593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.74 13.05 55.50 0.72 -24.01 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 3 Si 0.93 21.21 29.55 -169.99 -5.02 16.19 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.30 -8.50 9.68 -14.93 -0.14 -8.65 16 8 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 9 N -0.56 -14.53 5.29 -10.97 -0.06 -14.59 16 10 C 0.44 10.65 7.82 -10.99 -0.09 10.56 16 11 O -0.58 -16.21 15.78 5.54 0.09 -16.13 16 12 C 0.05 0.92 6.17 -4.98 -0.03 0.89 16 13 N -0.67 -11.20 6.13 -115.06 -0.70 -11.90 16 14 C 0.06 0.73 5.69 -3.82 -0.02 0.71 16 15 C -0.12 -1.21 5.47 -26.73 -0.15 -1.36 16 16 C -0.12 -0.89 5.21 -26.73 -0.14 -1.03 16 17 C -0.12 -0.79 5.21 -26.73 -0.14 -0.93 16 18 C -0.13 -0.70 5.33 -26.73 -0.14 -0.84 16 19 C 0.12 0.79 5.67 -4.04 -0.02 0.77 16 20 N -0.73 -4.41 5.56 -60.29 -0.33 -4.74 16 21 C 0.52 4.26 7.35 -10.98 -0.08 4.18 16 22 O -0.54 -6.79 15.90 5.56 0.09 -6.71 16 23 C -0.14 -0.72 4.15 -90.96 -0.38 -1.10 16 24 C -0.12 -0.67 7.40 -25.92 -0.19 -0.86 16 25 C -0.14 -0.55 8.10 -25.80 -0.21 -0.76 16 26 C -0.12 -0.50 7.64 -25.80 -0.20 -0.70 16 27 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 31 H 0.35 5.98 8.43 -39.29 -0.33 5.65 16 32 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.40 1.30 8.47 -40.82 -0.35 0.96 16 45 H 0.11 0.36 8.14 -51.93 -0.42 -0.07 16 46 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.09 0.72 7.43 -51.93 -0.39 0.33 16 48 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 49 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 50 H 0.08 0.44 8.09 -51.93 -0.42 0.02 16 51 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 LS Contribution 419.46 15.07 6.32 6.32 Total: -1.00 -34.06 419.46 -10.27 -44.34 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -9.35 Total: 9.82 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -2.03 Total: 1.41 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: -0.37 Total: -55.25 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: 0.18 Total: -22.83 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -34.06 -10.27 -44.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177730588.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.774 kcal (2) G-P(sol) polarization free energy of solvation -34.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds