Wall clock time and date at job start Fri Apr 10 2020 18:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 120.00144 * 2 1 4 4 H 1.48498 * 109.47230 * 270.00323 * 3 2 1 5 5 H 1.48505 * 109.46692 * 29.99414 * 3 2 1 6 6 H 1.48492 * 109.47323 * 149.99583 * 3 2 1 7 7 C 1.38815 * 120.00353 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99844 * 179.97438 * 7 2 1 9 9 N 1.36930 * 119.99877 * 0.02562 * 7 2 1 10 10 C 1.46506 * 120.00258 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47289 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47131 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47131 * 180.02562 * 12 11 10 14 14 C 1.53006 * 109.47127 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.47127 * 180.02562 * 14 13 12 16 16 N 1.46496 * 109.47294 * 179.97438 * 15 14 13 17 17 C 1.34779 * 120.00447 * 179.97438 * 16 15 14 18 18 O 1.21284 * 119.99695 * 359.97438 * 17 16 15 19 19 C 1.50696 * 120.00208 * 179.97438 * 17 16 15 20 20 H 1.09003 * 108.56161 * 62.06834 * 19 17 16 21 21 C 1.51775 * 108.61694 * 179.97438 * 19 17 16 22 22 C 1.52984 * 110.88496 * 188.12446 * 21 19 17 23 23 N 1.47201 * 108.66614 * 273.53248 * 22 21 19 24 24 C 1.33375 * 120.42052 * 71.95462 * 23 22 21 25 25 O 1.21280 * 119.88688 * 179.71413 * 24 23 22 26 26 C 1.51418 * 120.22062 * 359.69756 * 24 23 22 27 27 C 1.51789 * 108.61743 * 304.26576 * 19 17 16 28 28 H 0.97000 * 120.00225 * 0.02562 * 1 2 3 29 29 H 0.97006 * 119.99982 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.46577 * 59.99784 * 10 9 7 31 31 H 1.08998 * 109.46571 * 299.99727 * 10 9 7 32 32 H 1.09000 * 109.47611 * 59.99557 * 11 10 9 33 33 H 1.09001 * 109.46832 * 299.99854 * 11 10 9 34 34 H 1.08996 * 109.47452 * 60.00000 * 12 11 10 35 35 H 1.09001 * 109.46997 * 299.99574 * 12 11 10 36 36 H 1.09001 * 109.47502 * 60.00153 * 13 12 11 37 37 H 1.09001 * 109.47289 * 299.99950 * 13 12 11 38 38 H 1.09001 * 109.47002 * 299.99574 * 14 13 12 39 39 H 1.08993 * 109.46955 * 60.00011 * 14 13 12 40 40 H 1.09001 * 109.47289 * 299.99953 * 15 14 13 41 41 H 1.09004 * 109.47261 * 59.99697 * 15 14 13 42 42 H 0.97006 * 119.99755 * 359.97438 * 16 15 14 43 43 H 1.08998 * 109.20032 * 308.49132 * 21 19 17 44 44 H 1.09005 * 109.19142 * 67.76616 * 21 19 17 45 45 H 1.08996 * 109.60679 * 33.29052 * 22 21 19 46 46 H 1.09007 * 109.60717 * 153.78225 * 22 21 19 47 47 H 0.96991 * 119.78923 * 251.93451 * 23 22 21 48 48 H 1.09002 * 109.63356 * 48.49296 * 26 24 23 49 49 H 1.08999 * 109.63068 * 168.88387 * 26 24 23 50 50 H 1.09007 * 109.22030 * 292.39520 * 27 19 17 51 51 H 1.09000 * 109.22265 * 51.74414 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0017 11 6 1.0640 -4.8197 0.0008 12 6 1.8290 -6.1447 0.0026 13 6 0.8348 -7.3076 0.0011 14 6 1.5999 -8.6327 0.0023 15 6 0.6057 -9.7956 0.0001 16 7 1.3382 -11.0643 0.0006 17 6 0.6644 -12.2316 -0.0006 18 8 -0.5485 -12.2316 -0.0016 19 6 1.4179 -13.5366 -0.0006 20 1 2.0098 -13.5955 0.9128 21 6 0.4146 -14.6754 -0.0014 22 6 1.1157 -16.0201 0.2005 23 7 1.5556 -16.5236 -1.1109 24 6 2.5770 -15.9485 -1.7471 25 8 2.9347 -16.3745 -2.8248 26 6 3.2912 -14.7652 -1.1286 27 6 2.3626 -13.5507 -1.1886 28 1 -0.4850 0.8400 -0.0004 29 1 0.3556 -2.3880 0.0005 30 1 2.6842 -3.7140 0.8922 31 1 2.6855 -3.7149 -0.8878 32 1 0.4383 -4.7622 -0.8899 33 1 0.4364 -4.7618 0.8901 34 1 2.4544 -6.2020 0.8935 35 1 2.4570 -6.2029 -0.8865 36 1 0.2098 -7.2502 -0.8901 37 1 0.2065 -7.2497 0.8899 38 1 2.2279 -8.6904 -0.8868 39 1 2.2251 -8.6904 0.8932 40 1 -0.0227 -9.7381 0.8889 41 1 -0.0193 -9.7377 -0.8911 42 1 2.3083 -11.0642 0.0018 43 1 -0.3034 -14.5211 0.8040 44 1 -0.1142 -14.6865 -0.9546 45 1 1.9806 -15.8876 0.8504 46 1 0.4221 -16.7302 0.6510 47 1 1.1000 -17.2786 -1.5147 48 1 3.5363 -14.9874 -0.0900 49 1 4.2057 -14.5581 -1.6843 50 1 1.7805 -13.5898 -2.1095 51 1 2.9613 -12.6399 -1.1818 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179139544.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:29 Heat of formation + Delta-G solvation = -101.240173 kcal Electronic energy + Delta-G solvation = -26325.043948 eV Core-core repulsion = 22450.947867 eV Total energy + Delta-G solvation = -3874.096081 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.14543 -39.90025 -37.21762 -36.70317 -35.47459 -34.65467 -33.89706 -31.90669 -31.70081 -30.07047 -28.07920 -26.61840 -24.74529 -24.15722 -22.59727 -22.03168 -21.22487 -20.67386 -20.42233 -20.17362 -18.07685 -17.74706 -17.01270 -16.91481 -16.39169 -16.32701 -15.68489 -15.17415 -14.74157 -14.70696 -14.63443 -14.38930 -14.13933 -13.84467 -13.50211 -13.42503 -13.21746 -12.95397 -12.84136 -12.73876 -12.42048 -12.37594 -12.13149 -11.76320 -11.57192 -11.45324 -11.35890 -11.20227 -10.93558 -10.75031 -10.73122 -10.45453 -10.33436 -10.27430 -10.13986 -9.95349 -9.70425 -9.63712 -9.46104 -8.84496 -6.88879 -5.74043 -3.02485 2.10910 2.21817 2.70464 2.74874 3.44903 3.49577 3.51656 3.80284 3.94639 4.05013 4.07135 4.47927 4.48900 4.52315 4.62719 4.67886 4.70608 4.73612 4.81066 4.86849 4.92335 5.02091 5.19843 5.25338 5.31843 5.34977 5.36858 5.44680 5.54380 5.61983 5.63699 5.67507 5.69976 5.91810 5.93583 6.04770 6.11469 6.24001 6.32279 6.33113 6.41031 6.47784 6.69308 6.91288 6.95356 7.05048 7.70898 7.71863 7.79057 8.45268 9.55951 10.15580 10.50067 11.49077 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.036404 B = 0.001308 C = 0.001279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.961328 B =21395.384516 C =21889.331031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.735 5.735 10 C 0.152 3.848 11 C -0.127 4.127 12 C -0.113 4.113 13 C -0.116 4.116 14 C -0.131 4.131 15 C 0.116 3.884 16 N -0.730 5.730 17 C 0.513 3.487 18 O -0.537 6.537 19 C -0.107 4.107 20 H 0.101 0.899 21 C -0.126 4.126 22 C 0.108 3.892 23 N -0.725 5.725 24 C 0.516 3.484 25 O -0.551 6.551 26 C -0.137 4.137 27 C -0.107 4.107 28 H 0.255 0.745 29 H 0.383 0.617 30 H 0.016 0.984 31 H 0.016 0.984 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.400 0.600 43 H 0.090 0.910 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.093 0.907 47 H 0.401 0.599 48 H 0.093 0.907 49 H 0.103 0.897 50 H 0.075 0.925 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.631 -36.934 2.869 37.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.379 5.379 10 C 0.024 3.976 11 C -0.165 4.165 12 C -0.151 4.151 13 C -0.155 4.155 14 C -0.169 4.169 15 C -0.007 4.007 16 N -0.381 5.381 17 C 0.298 3.702 18 O -0.413 6.413 19 C -0.129 4.129 20 H 0.119 0.881 21 C -0.165 4.165 22 C -0.016 4.016 23 N -0.377 5.377 24 C 0.303 3.697 25 O -0.429 6.429 26 C -0.177 4.177 27 C -0.146 4.146 28 H 0.065 0.935 29 H 0.217 0.783 30 H 0.034 0.966 31 H 0.034 0.966 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.235 0.765 43 H 0.109 0.891 44 H 0.097 0.903 45 H 0.097 0.903 46 H 0.111 0.889 47 H 0.237 0.763 48 H 0.111 0.889 49 H 0.122 0.878 50 H 0.094 0.906 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.170 -36.837 2.409 37.150 hybrid contribution 0.368 0.804 -0.039 0.885 sum 4.538 -36.032 2.370 36.394 Atomic orbital electron populations 1.69662 1.05128 1.25603 1.57941 1.24750 0.95535 0.97704 1.03141 0.86179 0.78628 0.83822 0.77516 1.21726 1.21750 1.20777 1.19260 0.91053 0.84297 1.42483 0.91218 1.42397 1.05907 1.00157 1.89468 1.20658 0.93653 0.85722 0.97522 1.21729 0.98894 0.93845 1.02002 1.21497 0.97858 0.93874 1.01890 1.21520 0.98436 0.92855 1.02640 1.21829 0.98232 0.94050 1.02743 1.21471 0.94960 0.81656 1.02637 1.46101 1.10461 1.06040 1.75546 1.20615 0.88186 0.85428 0.75922 1.90732 1.13969 1.87623 1.48997 1.21057 0.97613 0.93320 1.00883 0.88137 1.21678 0.97584 0.92126 1.05085 1.21819 0.99777 0.95748 0.84259 1.46008 1.34485 1.35563 1.21686 1.20586 0.80007 0.84178 0.84943 1.90781 1.65767 1.64605 1.21729 1.21974 0.99596 0.92978 1.03200 1.21240 0.96919 0.98081 0.98311 0.93542 0.78336 0.96597 0.96598 0.92084 0.92097 0.92099 0.92100 0.91631 0.91628 0.91271 0.91271 0.91305 0.91336 0.76515 0.89147 0.90281 0.90283 0.88867 0.76259 0.88859 0.87814 0.90626 0.89839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.81 13.06 55.49 0.72 -28.08 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.69 29.55 -169.99 -5.02 17.66 16 4 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.74 -19.32 5.60 -59.91 -0.34 -19.66 16 10 C 0.15 3.13 6.26 -4.04 -0.03 3.10 16 11 C -0.13 -2.03 5.33 -26.73 -0.14 -2.17 16 12 C -0.11 -1.34 5.21 -26.73 -0.14 -1.48 16 13 C -0.12 -1.11 5.21 -26.73 -0.14 -1.25 16 14 C -0.13 -0.92 5.33 -26.73 -0.14 -1.07 16 15 C 0.12 0.90 5.67 -4.05 -0.02 0.87 16 16 N -0.73 -4.41 5.35 -60.30 -0.32 -4.74 16 17 C 0.51 3.86 7.14 -10.99 -0.08 3.78 16 18 O -0.54 -6.41 15.74 5.55 0.09 -6.32 16 19 C -0.11 -0.42 2.05 -93.01 -0.19 -0.61 16 20 H 0.10 0.16 7.87 -51.93 -0.41 -0.25 16 21 C -0.13 -0.52 4.39 -27.36 -0.12 -0.64 16 22 C 0.11 0.21 6.46 -3.67 -0.02 0.19 16 23 N -0.72 -3.16 5.27 -59.90 -0.32 -3.48 16 24 C 0.52 3.63 7.06 -11.26 -0.08 3.55 16 25 O -0.55 -6.57 17.92 5.56 0.10 -6.47 16 26 C -0.14 -0.51 5.57 -27.53 -0.15 -0.66 16 27 C -0.11 -0.40 4.87 -27.34 -0.13 -0.53 16 28 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 29 H 0.38 10.52 7.67 -40.82 -0.31 10.21 16 30 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.40 1.31 7.47 -40.82 -0.30 1.01 16 43 H 0.09 0.43 7.74 -51.93 -0.40 0.03 16 44 H 0.08 0.49 8.05 -51.93 -0.42 0.07 16 45 H 0.08 0.04 6.71 -51.93 -0.35 -0.30 16 46 H 0.09 0.03 8.14 -51.93 -0.42 -0.39 16 47 H 0.40 1.56 8.91 -40.82 -0.36 1.19 16 48 H 0.09 0.13 6.77 -51.93 -0.35 -0.22 16 49 H 0.10 0.40 8.13 -51.93 -0.42 -0.02 16 50 H 0.08 0.44 7.86 -51.92 -0.41 0.03 16 51 H 0.08 0.18 6.97 -51.93 -0.36 -0.18 16 LS Contribution 406.00 15.07 6.12 6.12 Total: -1.00 -37.55 406.00 -9.75 -47.30 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -9.14 Total: 2.20 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -1.64 Total: -4.53 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: -0.25 Total: -55.96 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: 0.19 Total: -12.78 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -37.55 -9.75 -47.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179139544.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.943 kcal (2) G-P(sol) polarization free energy of solvation -37.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds