Wall clock time and date at job start Fri Apr 10 2020 18:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50701 * 109.73496 * 2 1 4 4 O 1.21277 * 120.00464 * 114.35732 * 3 2 1 5 5 N 1.34776 * 119.99765 * 294.35286 * 3 2 1 6 6 C 1.46506 * 120.00167 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.47127 * 180.02562 * 6 5 3 8 8 C 1.53000 * 109.47227 * 179.97438 * 7 6 5 9 9 C 1.52995 * 109.47389 * 179.97438 * 8 7 6 10 10 C 1.53001 * 109.47190 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.47028 * 180.02562 * 10 9 8 12 12 N 1.46496 * 109.47038 * 180.02562 * 11 10 9 13 13 C 1.36938 * 120.00193 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99898 * 0.02562 * 13 12 11 15 15 C 1.38809 * 120.00212 * 179.97438 * 13 12 11 16 16 N 1.31619 * 120.00004 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99828 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47217 * 90.00076 * 17 15 13 19 19 H 1.48504 * 109.46916 * 209.99892 * 17 15 13 20 20 H 1.48500 * 109.47348 * 329.99761 * 17 15 13 21 21 C 1.53344 * 109.60648 * 239.58796 * 2 1 3 22 22 C 1.53072 * 108.42557 * 172.71339 * 21 2 1 23 23 C 1.50179 * 109.89234 * 48.89965 * 22 21 2 24 24 O 1.21279 * 118.24230 * 162.41659 * 23 22 21 25 25 N 1.33354 * 123.50809 * 342.70093 * 23 22 21 26 26 C 1.45741 * 124.11623 * 1.64729 * 25 23 22 27 27 H 1.08999 * 109.47083 * 180.41126 * 1 2 3 28 28 H 1.09004 * 109.47598 * 300.41019 * 1 2 3 29 29 H 1.09009 * 109.46922 * 60.41088 * 1 2 3 30 30 H 0.97003 * 120.00284 * 0.02562 * 5 3 2 31 31 H 1.09001 * 109.46631 * 299.99838 * 6 5 3 32 32 H 1.08997 * 109.47180 * 60.00024 * 6 5 3 33 33 H 1.09003 * 109.47190 * 300.00184 * 7 6 5 34 34 H 1.08997 * 109.47177 * 59.99892 * 7 6 5 35 35 H 1.09001 * 109.46847 * 300.00389 * 8 7 6 36 36 H 1.09006 * 109.46891 * 59.99726 * 8 7 6 37 37 H 1.08993 * 109.47220 * 300.00626 * 9 8 7 38 38 H 1.09010 * 109.46828 * 60.00492 * 9 8 7 39 39 H 1.08991 * 109.47312 * 300.00689 * 10 9 8 40 40 H 1.09010 * 109.46563 * 60.00661 * 10 9 8 41 41 H 1.09003 * 109.46791 * 300.00358 * 11 10 9 42 42 H 1.08997 * 109.47177 * 60.00429 * 11 10 9 43 43 H 0.97005 * 120.00202 * 0.02562 * 12 11 10 44 44 H 0.96998 * 119.99590 * 179.97438 * 16 15 13 45 45 H 1.09007 * 109.67137 * 52.98290 * 21 2 1 46 46 H 1.08992 * 109.67356 * 292.44697 * 21 2 1 47 47 H 1.09001 * 109.39877 * 288.77440 * 22 21 2 48 48 H 1.08994 * 109.32819 * 168.98758 * 22 21 2 49 49 H 0.96990 * 117.94574 * 181.91987 * 25 23 22 50 50 H 1.09001 * 109.43953 * 220.98530 * 26 25 23 51 51 H 1.08996 * 108.92467 * 101.54283 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0388 1.4185 0.0000 4 8 2.6513 1.8431 0.9568 5 7 1.8133 2.2153 -1.0634 6 6 2.3085 3.5941 -1.0637 7 6 1.9201 4.2752 -2.3776 8 6 2.4366 5.7153 -2.3777 9 6 2.0488 6.3962 -3.6917 10 6 2.5648 7.8366 -3.6915 11 6 2.1764 8.5176 -5.0054 12 7 2.6710 9.8966 -5.0055 13 6 2.4418 10.7062 -6.0858 14 1 1.8960 10.3282 -6.9377 15 6 2.9100 12.0129 -6.0857 16 7 2.6892 12.7912 -7.1239 17 14 3.8534 12.6669 -4.6119 18 1 5.3040 12.4101 -4.7991 19 1 3.6217 14.1282 -4.4847 20 1 3.3843 11.9823 -3.3804 21 6 2.0445 -0.7312 -1.2458 22 6 3.5638 -0.5584 -1.3152 23 6 4.1768 -0.8866 0.0159 24 8 5.3666 -1.1175 0.0586 25 7 3.4818 -0.9430 1.1526 26 6 2.0430 -0.7290 1.2425 27 1 -0.3633 -1.0276 0.0074 28 1 -0.3634 0.5202 0.8863 29 1 -0.3633 0.5075 -0.8937 30 1 1.3231 1.8758 -1.8285 31 1 1.8677 4.1385 -0.2285 32 1 3.3937 3.5905 -0.9629 33 1 2.3603 3.7308 -3.2130 34 1 0.8347 4.2789 -2.4779 35 1 1.9960 6.2594 -1.5422 36 1 3.5220 5.7120 -2.2771 37 1 2.4897 5.8520 -4.5268 38 1 0.9634 6.3995 -3.7927 39 1 2.1236 8.3805 -2.8564 40 1 3.6502 7.8336 -3.5904 41 1 2.6174 7.9737 -5.8408 42 1 1.0911 8.5206 -5.1062 43 1 3.1616 10.2360 -4.2405 44 1 3.0161 13.7045 -7.1235 45 1 1.5855 -0.3044 -2.1376 46 1 1.7985 -1.7908 -1.1771 47 1 3.7993 0.4730 -1.5778 48 1 3.9686 -1.2269 -2.0749 49 1 3.9647 -1.1348 1.9716 50 1 1.8194 -0.1335 2.1277 51 1 1.5462 -1.6957 1.3237 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179348972.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:36 Heat of formation + Delta-G solvation = -93.996083 kcal Electronic energy + Delta-G solvation = -27174.234250 eV Core-core repulsion = 23300.452297 eV Total energy + Delta-G solvation = -3873.781954 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.66261 -39.58867 -37.30513 -36.72066 -35.64603 -34.43214 -33.70838 -32.01657 -31.87489 -30.36906 -27.40591 -26.90412 -25.00563 -24.56909 -23.30228 -22.11804 -21.43901 -20.96346 -20.86058 -19.34778 -17.68156 -17.47982 -17.01640 -16.70666 -16.47722 -16.30306 -15.99566 -15.35277 -14.81938 -14.68012 -14.51811 -14.44723 -14.01398 -13.90529 -13.68252 -13.32685 -13.27287 -13.09775 -12.95334 -12.86648 -12.72771 -12.44800 -12.05569 -11.91295 -11.82731 -11.65209 -11.49969 -11.47297 -11.04301 -10.88377 -10.80888 -10.42351 -10.39181 -10.20751 -10.15314 -10.05464 -9.57363 -9.54984 -9.48562 -8.87404 -7.20743 -5.75442 -3.10533 2.12044 2.26328 2.60636 2.85029 3.38838 3.41940 3.46339 3.67876 3.79871 3.95089 4.09696 4.28252 4.44735 4.58746 4.60783 4.64235 4.67320 4.82062 4.85763 4.91143 4.93966 5.02665 5.11229 5.15398 5.20269 5.20708 5.27459 5.33536 5.38567 5.46089 5.51930 5.56350 5.60694 5.76303 5.83181 5.97109 5.99379 6.10579 6.19554 6.22278 6.33314 6.36267 6.78326 6.82532 6.88634 6.97812 7.71452 7.80656 8.01536 8.44022 9.23583 9.96226 10.16518 11.43094 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.025639 B = 0.001590 C = 0.001567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.822637 B =17606.103757 C =17865.422533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.100 4.100 3 C 0.520 3.480 4 O -0.529 6.529 5 N -0.727 5.727 6 C 0.116 3.884 7 C -0.130 4.130 8 C -0.117 4.117 9 C -0.113 4.113 10 C -0.131 4.131 11 C 0.156 3.844 12 N -0.759 5.759 13 C -0.244 4.244 14 H 0.090 0.910 15 C 0.002 3.998 16 N -0.935 5.935 17 Si 0.886 3.114 18 H -0.284 1.284 19 H -0.291 1.291 20 H -0.277 1.277 21 C -0.113 4.113 22 C -0.143 4.143 23 C 0.521 3.479 24 O -0.558 6.558 25 N -0.711 5.711 26 C 0.133 3.867 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.400 0.600 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.025 0.975 42 H 0.024 0.976 43 H 0.360 0.640 44 H 0.259 0.741 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.100 0.900 48 H 0.108 0.892 49 H 0.402 0.598 50 H 0.088 0.912 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.348 -34.594 16.750 39.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.103 4.103 3 C 0.305 3.695 4 O -0.404 6.404 5 N -0.379 5.379 6 C -0.007 4.007 7 C -0.168 4.168 8 C -0.155 4.155 9 C -0.151 4.151 10 C -0.169 4.169 11 C 0.029 3.971 12 N -0.404 5.404 13 C -0.374 4.374 14 H 0.107 0.893 15 C -0.193 4.193 16 N -0.583 5.583 17 Si 0.716 3.284 18 H -0.211 1.211 19 H -0.217 1.217 20 H -0.204 1.204 21 C -0.150 4.150 22 C -0.183 4.183 23 C 0.307 3.693 24 O -0.436 6.436 25 N -0.362 5.362 26 C 0.008 3.992 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.235 0.765 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.043 0.957 42 H 0.042 0.958 43 H 0.193 0.807 44 H 0.069 0.931 45 H 0.103 0.897 46 H 0.105 0.895 47 H 0.118 0.882 48 H 0.126 0.874 49 H 0.238 0.762 50 H 0.106 0.894 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.486 -34.256 17.029 38.801 hybrid contribution 0.500 0.551 0.907 1.173 sum -5.985 -33.705 17.936 38.647 Atomic orbital electron populations 1.21783 0.90556 1.03725 1.03529 1.21227 0.98483 0.92958 0.97661 1.20301 0.79542 0.87017 0.82663 1.90753 1.40019 1.75406 1.34234 1.46037 1.58361 1.13609 1.19904 1.21475 0.99743 0.80726 0.98730 1.21823 1.01810 0.96892 0.96301 1.21520 1.01353 0.93801 0.98815 1.21486 1.01105 0.95802 0.96716 1.21784 1.00974 0.94927 0.99193 1.20635 0.96758 0.85448 0.94256 1.42748 1.68102 1.09730 1.19827 1.19089 1.30082 0.92785 0.95476 0.89267 1.24688 1.00907 0.96391 0.97363 1.69706 1.51265 1.07691 1.29675 0.86518 0.80341 0.78201 0.83308 1.21061 1.21707 1.20358 1.21804 0.94666 1.01879 0.96685 1.21732 0.95836 1.05154 0.95542 1.20046 0.86839 0.76125 0.86247 1.90775 1.15758 1.50025 1.87084 1.45276 1.08998 1.71791 1.10157 1.21248 0.80593 0.99676 0.97681 0.90615 0.91303 0.91159 0.76525 0.91297 0.91363 0.91182 0.91188 0.91668 0.91650 0.91873 0.91907 0.92156 0.92127 0.95710 0.95765 0.80717 0.93089 0.89665 0.89480 0.88181 0.87405 0.76233 0.89373 0.90628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.23 8.45 37.15 0.31 0.09 16 2 C -0.10 -0.39 0.65 -155.53 -0.10 -0.49 16 3 C 0.52 3.81 4.74 -10.99 -0.05 3.75 16 4 O -0.53 -6.21 15.59 5.56 0.09 -6.12 16 5 N -0.73 -4.09 5.31 -60.29 -0.32 -4.41 16 6 C 0.12 0.85 5.68 -4.04 -0.02 0.82 16 7 C -0.13 -0.84 5.33 -26.73 -0.14 -0.98 16 8 C -0.12 -1.03 5.21 -26.73 -0.14 -1.17 16 9 C -0.11 -1.24 5.21 -26.73 -0.14 -1.37 16 10 C -0.13 -1.94 5.33 -26.73 -0.14 -2.08 16 11 C 0.16 3.04 6.26 -4.04 -0.03 3.02 16 12 N -0.76 -18.63 5.41 -59.91 -0.32 -18.95 16 13 C -0.24 -7.12 10.47 -15.06 -0.16 -7.27 16 14 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 15 C 0.00 0.06 5.50 -17.43 -0.10 -0.03 16 16 N -0.94 -29.82 13.97 55.49 0.78 -29.04 16 17 Si 0.89 22.52 27.73 -169.99 -4.71 17.81 16 18 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 19 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 20 H -0.28 -6.64 6.52 56.52 0.37 -6.28 16 21 C -0.11 -0.31 4.73 -26.52 -0.13 -0.44 16 22 C -0.14 -0.87 5.50 -28.10 -0.15 -1.03 16 23 C 0.52 5.03 7.44 -11.87 -0.09 4.94 16 24 O -0.56 -7.97 17.78 5.56 0.10 -7.87 16 25 N -0.71 -5.14 5.12 -61.40 -0.31 -5.46 16 26 C 0.13 0.59 5.40 -4.49 -0.02 0.57 16 27 H 0.07 0.02 8.14 -51.93 -0.42 -0.41 16 28 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.07 0.06 8.01 -51.92 -0.42 -0.35 16 30 H 0.40 1.16 7.63 -40.82 -0.31 0.85 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.36 8.60 5.53 -40.82 -0.23 8.37 16 44 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 45 H 0.08 0.08 7.56 -51.93 -0.39 -0.32 16 46 H 0.09 0.15 8.13 -51.93 -0.42 -0.28 16 47 H 0.10 0.69 7.36 -51.93 -0.38 0.31 16 48 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.40 2.78 8.80 -40.82 -0.36 2.42 16 50 H 0.09 0.44 7.72 -51.93 -0.40 0.04 16 51 H 0.08 0.15 8.12 -51.93 -0.42 -0.27 16 LS Contribution 404.91 15.07 6.10 6.10 Total: -1.00 -38.42 404.91 -8.97 -47.39 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -9.26 Total: 2.23 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -1.10 Total: -1.68 kcal Atomic # 7 Polarization: -57.68 SS G_CDS: -0.18 Total: -57.86 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: 0.19 Total: -13.99 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.71 Total: 17.81 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -38.42 -8.97 -47.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179348972.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.602 kcal (2) G-P(sol) polarization free energy of solvation -38.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds