Wall clock time and date at job start Fri Apr 10 2020 18:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50701 * 109.73496 * 2 1 4 4 O 1.21277 * 120.00464 * 114.35732 * 3 2 1 5 5 N 1.34776 * 119.99765 * 294.35286 * 3 2 1 6 6 C 1.46506 * 120.00167 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.47127 * 180.02562 * 6 5 3 8 8 C 1.53000 * 109.47227 * 179.97438 * 7 6 5 9 9 C 1.52995 * 109.47389 * 179.97438 * 8 7 6 10 10 C 1.53001 * 109.47190 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.47028 * 180.02562 * 10 9 8 12 12 N 1.46496 * 109.47038 * 180.02562 * 11 10 9 13 13 C 1.36938 * 120.00193 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99898 * 0.02562 * 13 12 11 15 15 C 1.38809 * 120.00212 * 179.97438 * 13 12 11 16 16 N 1.31619 * 120.00004 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99828 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47217 * 90.00076 * 17 15 13 19 19 H 1.48504 * 109.46916 * 209.99892 * 17 15 13 20 20 H 1.48500 * 109.47348 * 329.99761 * 17 15 13 21 21 C 1.53344 * 109.60648 * 239.58796 * 2 1 3 22 22 C 1.53072 * 108.42557 * 172.71339 * 21 2 1 23 23 C 1.50179 * 109.89234 * 48.89965 * 22 21 2 24 24 O 1.21279 * 118.24230 * 162.41659 * 23 22 21 25 25 N 1.33354 * 123.50809 * 342.70093 * 23 22 21 26 26 C 1.45741 * 124.11623 * 1.64729 * 25 23 22 27 27 H 1.08999 * 109.47083 * 180.41126 * 1 2 3 28 28 H 1.09004 * 109.47598 * 300.41019 * 1 2 3 29 29 H 1.09009 * 109.46922 * 60.41088 * 1 2 3 30 30 H 0.97003 * 120.00284 * 0.02562 * 5 3 2 31 31 H 1.09001 * 109.46631 * 299.99838 * 6 5 3 32 32 H 1.08997 * 109.47180 * 60.00024 * 6 5 3 33 33 H 1.09003 * 109.47190 * 300.00184 * 7 6 5 34 34 H 1.08997 * 109.47177 * 59.99892 * 7 6 5 35 35 H 1.09001 * 109.46847 * 300.00389 * 8 7 6 36 36 H 1.09006 * 109.46891 * 59.99726 * 8 7 6 37 37 H 1.08993 * 109.47220 * 300.00626 * 9 8 7 38 38 H 1.09010 * 109.46828 * 60.00492 * 9 8 7 39 39 H 1.08991 * 109.47312 * 300.00689 * 10 9 8 40 40 H 1.09010 * 109.46563 * 60.00661 * 10 9 8 41 41 H 1.09003 * 109.46791 * 300.00358 * 11 10 9 42 42 H 1.08997 * 109.47177 * 60.00429 * 11 10 9 43 43 H 0.97005 * 120.00202 * 0.02562 * 12 11 10 44 44 H 0.96998 * 119.99590 * 179.97438 * 16 15 13 45 45 H 1.09007 * 109.67137 * 52.98290 * 21 2 1 46 46 H 1.08992 * 109.67356 * 292.44697 * 21 2 1 47 47 H 1.09001 * 109.39877 * 288.77440 * 22 21 2 48 48 H 1.08994 * 109.32819 * 168.98758 * 22 21 2 49 49 H 0.96990 * 117.94574 * 181.91987 * 25 23 22 50 50 H 1.09001 * 109.43953 * 220.98530 * 26 25 23 51 51 H 1.08996 * 108.92467 * 101.54283 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0388 1.4185 0.0000 4 8 2.6513 1.8431 0.9568 5 7 1.8133 2.2153 -1.0634 6 6 2.3085 3.5941 -1.0637 7 6 1.9201 4.2752 -2.3776 8 6 2.4366 5.7153 -2.3777 9 6 2.0488 6.3962 -3.6917 10 6 2.5648 7.8366 -3.6915 11 6 2.1764 8.5176 -5.0054 12 7 2.6710 9.8966 -5.0055 13 6 2.4418 10.7062 -6.0858 14 1 1.8960 10.3282 -6.9377 15 6 2.9100 12.0129 -6.0857 16 7 2.6892 12.7912 -7.1239 17 14 3.8534 12.6669 -4.6119 18 1 5.3040 12.4101 -4.7991 19 1 3.6217 14.1282 -4.4847 20 1 3.3843 11.9823 -3.3804 21 6 2.0445 -0.7312 -1.2458 22 6 3.5638 -0.5584 -1.3152 23 6 4.1768 -0.8866 0.0159 24 8 5.3666 -1.1175 0.0586 25 7 3.4818 -0.9430 1.1526 26 6 2.0430 -0.7290 1.2425 27 1 -0.3633 -1.0276 0.0074 28 1 -0.3634 0.5202 0.8863 29 1 -0.3633 0.5075 -0.8937 30 1 1.3231 1.8758 -1.8285 31 1 1.8677 4.1385 -0.2285 32 1 3.3937 3.5905 -0.9629 33 1 2.3603 3.7308 -3.2130 34 1 0.8347 4.2789 -2.4779 35 1 1.9960 6.2594 -1.5422 36 1 3.5220 5.7120 -2.2771 37 1 2.4897 5.8520 -4.5268 38 1 0.9634 6.3995 -3.7927 39 1 2.1236 8.3805 -2.8564 40 1 3.6502 7.8336 -3.5904 41 1 2.6174 7.9737 -5.8408 42 1 1.0911 8.5206 -5.1062 43 1 3.1616 10.2360 -4.2405 44 1 3.0161 13.7045 -7.1235 45 1 1.5855 -0.3044 -2.1376 46 1 1.7985 -1.7908 -1.1771 47 1 3.7993 0.4730 -1.5778 48 1 3.9686 -1.2269 -2.0749 49 1 3.9647 -1.1348 1.9716 50 1 1.8194 -0.1335 2.1277 51 1 1.5462 -1.6957 1.3237 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179348972.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:36 Heat of formation + Delta-G solvation = -123.662621 kcal Electronic energy + Delta-G solvation = -27175.520688 eV Core-core repulsion = 23300.452297 eV Total energy + Delta-G solvation = -3875.068391 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.16940 -40.27188 -38.08427 -37.55410 -36.79983 -35.46815 -34.51289 -33.55877 -32.39104 -31.74019 -28.56810 -27.21956 -25.89260 -25.23503 -24.25596 -23.27365 -22.25936 -22.11692 -21.63668 -19.88282 -19.57878 -18.28450 -17.53788 -17.22448 -17.09766 -16.88627 -16.69282 -16.59880 -16.11744 -15.80976 -15.47138 -15.11914 -14.99354 -14.89069 -14.49027 -14.31679 -14.15947 -13.91344 -13.56474 -13.45728 -13.43566 -13.31486 -13.13683 -13.02691 -12.67415 -12.48244 -12.41740 -12.21957 -12.08291 -11.89002 -11.86056 -11.82016 -11.77754 -11.52278 -11.34243 -10.98204 -10.89569 -10.73261 -10.13961 -10.07144 -9.31590 -8.05240 -5.38929 1.36348 1.40010 1.47531 1.55362 1.60575 2.13636 2.32640 2.46603 3.25955 3.36080 3.45603 3.56434 3.63327 3.70414 3.88786 3.96478 4.01782 4.22178 4.23648 4.30423 4.32342 4.35791 4.57938 4.58535 4.61184 4.67858 4.73395 4.77609 4.83152 4.84121 4.93012 4.97003 4.98076 4.99224 5.04791 5.10931 5.15926 5.27782 5.33031 5.34858 5.45123 5.52765 5.55387 5.73330 5.74297 6.19453 6.29796 6.53719 7.05891 7.13869 7.23675 7.83042 8.01902 9.16240 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.025639 B = 0.001590 C = 0.001567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.822637 B =17606.103757 C =17865.422533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.093 4.093 3 C 0.513 3.487 4 O -0.582 6.582 5 N -0.714 5.714 6 C 0.121 3.879 7 C -0.118 4.118 8 C -0.114 4.114 9 C -0.105 4.105 10 C -0.121 4.121 11 C 0.150 3.850 12 N -0.763 5.763 13 C -0.241 4.241 14 H 0.056 0.944 15 C -0.066 4.066 16 N -0.983 5.983 17 Si 0.959 3.041 18 H -0.277 1.277 19 H -0.293 1.293 20 H -0.252 1.252 21 C -0.105 4.105 22 C -0.141 4.141 23 C 0.509 3.491 24 O -0.619 6.619 25 N -0.707 5.707 26 C 0.125 3.875 27 H 0.099 0.901 28 H 0.059 0.941 29 H 0.083 0.917 30 H 0.417 0.583 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.023 0.977 42 H 0.023 0.977 43 H 0.366 0.634 44 H 0.259 0.741 45 H 0.114 0.886 46 H 0.109 0.891 47 H 0.089 0.911 48 H 0.116 0.884 49 H 0.399 0.601 50 H 0.080 0.920 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.973 -36.644 17.598 41.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.096 4.096 3 C 0.300 3.700 4 O -0.461 6.461 5 N -0.367 5.367 6 C -0.003 4.003 7 C -0.155 4.155 8 C -0.152 4.152 9 C -0.143 4.143 10 C -0.159 4.159 11 C 0.024 3.976 12 N -0.409 5.409 13 C -0.372 4.372 14 H 0.074 0.926 15 C -0.258 4.258 16 N -0.634 5.634 17 Si 0.785 3.215 18 H -0.203 1.203 19 H -0.220 1.220 20 H -0.177 1.177 21 C -0.142 4.142 22 C -0.181 4.181 23 C 0.297 3.703 24 O -0.502 6.502 25 N -0.355 5.355 26 C 0.001 3.999 27 H 0.118 0.882 28 H 0.078 0.922 29 H 0.102 0.898 30 H 0.255 0.745 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.041 0.959 42 H 0.041 0.959 43 H 0.199 0.801 44 H 0.067 0.933 45 H 0.133 0.867 46 H 0.128 0.872 47 H 0.107 0.893 48 H 0.134 0.866 49 H 0.234 0.766 50 H 0.098 0.902 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -8.189 -36.361 17.880 41.339 hybrid contribution 0.940 1.156 0.612 1.611 sum -7.249 -35.206 18.492 40.422 Atomic orbital electron populations 1.21821 0.88130 1.05412 1.03834 1.21262 1.00118 0.90318 0.97928 1.21020 0.78569 0.88415 0.81991 1.90733 1.42452 1.76685 1.36245 1.45914 1.57769 1.12814 1.20161 1.21297 0.98473 0.81688 0.98868 1.21695 1.02694 0.95198 0.95938 1.21457 1.01153 0.95151 0.97480 1.21419 1.01477 0.93332 0.98084 1.21709 1.01116 0.96889 0.96220 1.20876 0.96443 0.83310 0.96990 1.42814 1.68284 1.11200 1.18619 1.19093 1.28800 0.93482 0.95786 0.92623 1.25571 1.02630 0.96768 1.00791 1.69890 1.53095 1.08091 1.32283 0.85355 0.78782 0.77201 0.80126 1.20337 1.21974 1.17667 1.21889 0.91828 1.03361 0.97140 1.21756 0.98372 1.04516 0.93438 1.20774 0.86307 0.75296 0.87923 1.90733 1.18334 1.53051 1.88107 1.45410 1.10359 1.70185 1.09569 1.21560 0.78909 1.01454 0.97953 0.88218 0.92200 0.89763 0.74549 0.92609 0.93413 0.89998 0.89634 0.91837 0.92183 0.91298 0.91111 0.92054 0.92117 0.95937 0.95885 0.80141 0.93259 0.86726 0.87245 0.89262 0.86552 0.76599 0.90206 0.87172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.08 8.45 71.98 0.61 0.69 16 2 C -0.09 -0.48 0.65 -52.84 -0.03 -0.51 16 3 C 0.51 6.88 4.74 87.66 0.42 7.29 16 4 O -0.58 -13.91 15.59 -3.02 -0.05 -13.96 16 5 N -0.71 -6.56 5.31 -463.05 -2.46 -9.02 16 6 C 0.12 1.61 5.68 86.38 0.49 2.10 16 7 C -0.12 -1.19 5.33 30.59 0.16 -1.03 16 8 C -0.11 -1.75 5.21 30.59 0.16 -1.60 16 9 C -0.11 -2.02 5.21 30.59 0.16 -1.86 16 10 C -0.12 -3.35 5.33 30.60 0.16 -3.18 16 11 C 0.15 5.67 6.26 86.38 0.54 6.21 16 12 N -0.76 -36.80 5.41 -343.46 -1.86 -38.66 16 13 C -0.24 -14.16 10.47 84.03 0.88 -13.28 16 14 H 0.06 3.57 8.06 -2.91 -0.02 3.54 16 15 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 16 N -0.98 -63.96 13.97 21.65 0.30 -63.66 16 17 Si 0.96 46.25 27.73 68.60 1.90 48.15 16 18 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 19 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 20 H -0.25 -10.99 6.52 99.48 0.65 -10.34 16 21 C -0.10 -0.21 4.73 30.73 0.15 -0.06 16 22 C -0.14 -1.54 5.50 29.71 0.16 -1.37 16 23 C 0.51 9.98 7.44 87.71 0.65 10.63 16 24 O -0.62 -18.73 17.78 -3.03 -0.05 -18.79 16 25 N -0.71 -10.14 5.12 -467.34 -2.39 -12.54 16 26 C 0.12 0.89 5.40 86.50 0.47 1.36 16 27 H 0.10 -0.47 8.14 -2.39 -0.02 -0.49 16 28 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 29 H 0.08 -0.25 8.01 -2.38 -0.02 -0.27 16 30 H 0.42 0.93 7.63 -92.71 -0.71 0.22 16 31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 37 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 39 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 41 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.37 16.71 5.53 -92.70 -0.51 16.20 16 44 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 45 H 0.11 -0.38 7.56 -2.38 -0.02 -0.40 16 46 H 0.11 -0.16 8.13 -2.39 -0.02 -0.18 16 47 H 0.09 1.17 7.36 -2.39 -0.02 1.16 16 48 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.40 5.84 8.80 -92.72 -0.82 5.03 16 50 H 0.08 0.74 7.72 -2.39 -0.02 0.72 16 51 H 0.11 0.07 8.12 -2.39 -0.02 0.05 16 Total: -1.00 -88.00 404.91 -0.33 -88.34 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: -1.17 Total: 18.27 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: 5.44 Total: 1.86 kcal Atomic # 7 Polarization: -117.47 SS G_CDS: -6.41 Total: -123.88 kcal Atomic # 8 Polarization: -32.65 SS G_CDS: -0.10 Total: -32.75 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 1.90 Total: 48.15 kcal Total: -88.00 -0.33 -88.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179348972.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.325 kcal (2) G-P(sol) polarization free energy of solvation -88.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds