Wall clock time and date at job start Fri Apr 10 2020 18:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47001 * 2 1 4 4 C 1.53000 * 109.47355 * 301.55163 * 3 2 1 5 5 C 1.52993 * 109.47117 * 294.97818 * 4 3 2 6 6 C 1.52998 * 109.47043 * 61.55350 * 3 2 1 7 7 C 1.50701 * 109.47596 * 64.99803 * 6 3 2 8 8 O 1.21285 * 119.99540 * 0.02562 * 7 6 3 9 9 N 1.34770 * 120.00334 * 180.27843 * 7 6 3 10 10 C 1.47418 * 125.64999 * 359.41202 * 9 7 6 11 11 C 1.55132 * 104.72378 * 155.81994 * 10 9 7 12 12 C 1.55158 * 101.48233 * 37.29930 * 11 10 9 13 13 H 1.09001 * 110.87122 * 82.76790 * 12 11 10 14 14 N 1.46902 * 110.71743 * 205.96917 * 12 11 10 15 15 C 1.46899 * 111.00071 * 268.52543 * 14 12 11 16 16 C 1.50697 * 109.47239 * 180.02562 * 15 14 12 17 17 O 1.21296 * 119.99922 * 359.97438 * 16 15 14 18 18 N 1.34780 * 120.00342 * 179.97438 * 16 15 14 19 19 C 1.37088 * 120.00303 * 180.02562 * 18 16 15 20 20 H 1.08002 * 120.00361 * 359.97438 * 19 18 16 21 21 C 1.38956 * 120.00189 * 180.02562 * 19 18 16 22 22 N 1.31409 * 120.00268 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 119.99802 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.46975 * 90.00307 * 23 21 19 25 25 H 1.48499 * 109.47305 * 210.00509 * 23 21 19 26 26 H 1.48503 * 109.47265 * 330.00386 * 23 21 19 27 27 C 1.47032 * 125.64680 * 179.72726 * 9 7 6 28 28 H 1.08998 * 109.47261 * 61.88558 * 1 2 3 29 29 H 1.08999 * 109.46472 * 181.88811 * 1 2 3 30 30 H 1.08997 * 109.46780 * 301.88735 * 1 2 3 31 31 H 1.08999 * 109.47002 * 240.00075 * 2 1 3 32 32 H 1.08998 * 109.47461 * 120.00246 * 2 1 3 33 33 H 1.08999 * 109.46918 * 181.55030 * 3 2 1 34 34 H 1.09003 * 109.46818 * 54.97915 * 4 3 2 35 35 H 1.08998 * 109.47445 * 174.97323 * 4 3 2 36 36 H 1.09007 * 109.47261 * 65.79600 * 5 4 3 37 37 H 1.09000 * 109.47467 * 185.79586 * 5 4 3 38 38 H 1.08999 * 109.47171 * 305.79849 * 5 4 3 39 39 H 1.09002 * 109.47444 * 304.99989 * 6 3 2 40 40 H 1.09001 * 109.47366 * 185.00430 * 6 3 2 41 41 H 1.09006 * 110.37227 * 274.75120 * 10 9 7 42 42 H 1.08999 * 110.36471 * 37.07382 * 10 9 7 43 43 H 1.08996 * 111.19537 * 279.19325 * 11 10 9 44 44 H 1.09002 * 110.93906 * 155.29437 * 11 10 9 45 45 H 1.00906 * 110.99908 * 32.47477 * 14 12 11 46 46 H 1.09009 * 109.46947 * 299.99797 * 15 14 12 47 47 H 1.08996 * 109.47677 * 59.99935 * 15 14 12 48 48 H 0.97004 * 119.99368 * 359.97438 * 18 16 15 49 49 H 0.96991 * 120.00184 * 179.97438 * 22 21 19 50 50 H 1.09003 * 109.87905 * 300.43462 * 27 9 7 51 51 H 1.08991 * 109.88329 * 61.60340 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4984 2.1750 -1.2292 5 6 2.0768 1.5418 -2.4962 6 6 1.5622 2.1524 1.2683 7 6 2.1941 1.5061 2.4742 8 8 2.9525 0.5702 2.3330 9 7 1.9126 1.9648 3.7098 10 6 1.0182 3.0937 4.0240 11 6 0.5467 2.8302 5.4783 12 6 1.8335 2.2462 6.1191 13 1 2.5083 3.0434 6.4308 14 7 1.4997 1.3765 7.2550 15 6 1.4827 2.1360 8.5123 16 6 1.1380 1.2127 9.6523 17 8 0.9269 0.0376 9.4384 18 7 1.0644 1.6926 10.9097 19 6 0.7514 0.8526 11.9468 20 1 0.5634 -0.1938 11.7564 21 6 0.6750 1.3475 13.2430 22 7 0.3755 0.5421 14.2373 23 14 0.9995 3.1573 13.5723 24 1 -0.2741 3.9145 13.4735 25 1 1.5668 3.3186 14.9352 26 1 1.9638 3.6778 12.5700 27 6 2.4519 1.4264 4.9672 28 1 -0.3634 0.4843 -0.9064 29 1 -0.3632 -1.0271 0.0339 30 1 -0.3633 0.5429 0.8726 31 1 1.8934 -0.5138 -0.8900 32 1 1.8935 -0.5138 0.8899 33 1 3.1297 1.4426 -0.0278 34 1 0.4113 2.0980 -1.2483 35 1 1.7875 3.2249 -1.1833 36 1 1.7039 0.5223 -2.5957 37 1 1.7739 2.1258 -3.3652 38 1 3.1647 1.5259 -2.4303 39 1 0.4774 2.0749 1.3413 40 1 1.8494 3.2030 1.2268 41 1 1.5617 4.0367 3.9640 42 1 0.1656 3.1025 3.3450 43 1 -0.2663 2.1047 5.5036 44 1 0.2537 3.7593 5.9672 45 1 0.6195 0.9068 7.1044 46 1 2.4655 2.5749 8.6851 47 1 0.7371 2.9285 8.4481 48 1 1.2337 2.6323 11.0807 49 1 0.3225 0.8875 15.1420 50 1 2.1762 0.3768 5.0694 51 1 3.5369 1.5297 4.9796 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186622776.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:37 Heat of formation + Delta-G solvation = -80.453967 kcal Electronic energy + Delta-G solvation = -27600.944494 eV Core-core repulsion = 23727.749771 eV Total energy + Delta-G solvation = -3873.194723 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.50575 -38.85909 -38.14540 -36.94227 -34.84842 -33.87998 -31.71722 -31.59422 -31.08688 -30.13331 -28.89766 -26.52562 -25.21638 -23.91181 -23.60938 -23.15154 -21.06849 -19.78914 -19.42265 -18.98937 -18.41386 -17.31275 -16.71660 -16.27185 -16.02390 -15.62657 -15.32380 -15.14260 -14.83270 -14.54131 -14.08063 -13.93195 -13.72921 -13.35846 -13.30142 -13.18301 -13.03335 -12.73813 -12.70590 -12.50898 -12.29341 -12.25227 -12.15880 -12.14154 -11.72543 -11.67909 -11.53298 -11.42240 -11.19018 -11.07762 -10.76090 -10.74212 -10.65204 -10.62177 -9.99862 -9.82162 -9.60061 -8.83178 -8.64345 -8.24471 -8.18809 -6.33192 -3.84861 2.47632 2.72489 3.00225 3.03938 3.12988 3.70219 3.94491 4.07890 4.15378 4.27385 4.40139 4.50947 4.53294 4.72632 4.79704 4.86830 4.90156 4.99295 5.02538 5.09065 5.12011 5.16226 5.19455 5.20340 5.26518 5.33482 5.44239 5.48040 5.53033 5.55867 5.61529 5.67523 5.72371 5.73099 5.79682 5.83192 5.85353 5.88391 5.94025 5.99004 6.07791 6.13940 6.30005 7.00243 7.31720 7.45549 7.55494 8.01472 8.12012 8.57008 8.92641 9.39739 9.79519 10.79891 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.035450 B = 0.001853 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.652985 B =15110.622378 C =15418.778101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.128 4.128 3 C -0.072 4.072 4 C -0.123 4.123 5 C -0.152 4.152 6 C -0.136 4.136 7 C 0.527 3.473 8 O -0.534 6.534 9 N -0.621 5.621 10 C 0.103 3.897 11 C -0.168 4.168 12 C 0.079 3.921 13 H 0.094 0.906 14 N -0.658 5.658 15 C 0.049 3.951 16 C 0.448 3.552 17 O -0.564 6.564 18 N -0.589 5.589 19 C -0.306 4.306 20 H 0.120 0.880 21 C 0.042 3.958 22 N -0.880 5.880 23 Si 0.880 3.120 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.269 1.269 27 C 0.115 3.885 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.051 0.949 38 H 0.054 0.946 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.355 0.645 46 H 0.089 0.911 47 H 0.047 0.953 48 H 0.370 0.630 49 H 0.274 0.726 50 H 0.080 0.920 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.356 11.491 -29.159 31.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.165 4.165 3 C -0.090 4.090 4 C -0.160 4.160 5 C -0.210 4.210 6 C -0.175 4.175 7 C 0.316 3.684 8 O -0.411 6.411 9 N -0.357 5.357 10 C -0.021 4.021 11 C -0.207 4.207 12 C -0.032 4.032 13 H 0.112 0.888 14 N -0.290 5.290 15 C -0.083 4.083 16 C 0.234 3.766 17 O -0.446 6.446 18 N -0.229 5.229 19 C -0.435 4.435 20 H 0.137 0.863 21 C -0.161 4.161 22 N -0.520 5.520 23 Si 0.707 3.293 24 H -0.197 1.197 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.008 4.008 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.113 0.887 40 H 0.108 0.892 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.100 0.900 44 H 0.104 0.896 45 H 0.176 0.824 46 H 0.107 0.893 47 H 0.065 0.935 48 H 0.203 0.797 49 H 0.084 0.916 50 H 0.098 0.902 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.246 9.870 -29.111 30.764 hybrid contribution -0.651 2.105 0.545 2.269 sum 0.595 11.975 -28.566 30.980 Atomic orbital electron populations 1.21905 0.96505 1.01527 1.01355 1.21689 0.95372 0.96142 1.03333 1.20963 1.00953 0.95136 0.91992 1.21641 1.00901 0.99168 0.94300 1.21784 1.01088 1.00994 0.97085 1.21814 1.02100 1.00776 0.92837 1.20382 0.81577 0.83436 0.82980 1.90690 1.36611 1.28440 1.85365 1.48564 1.47276 1.33886 1.05957 1.22309 0.93427 0.89655 0.96689 1.23631 0.99168 1.02780 0.95157 1.22617 0.95702 0.94253 0.90654 0.88832 1.59941 1.40649 1.28642 0.99765 1.21734 1.01667 0.95033 0.89886 1.19687 0.84408 0.89105 0.83413 1.90580 1.53404 1.16993 1.83589 1.42197 1.63641 1.10272 1.06789 1.19437 1.44305 0.95131 0.84597 0.86268 1.25045 0.97556 0.98253 0.95291 1.69617 1.47387 1.35049 0.99972 0.86666 0.78877 0.84952 0.78844 1.19676 1.20150 1.19477 1.21900 0.98380 0.99131 0.81365 0.92662 0.92947 0.92986 0.92043 0.89963 0.90441 0.91511 0.92190 0.92448 0.92957 0.92707 0.88720 0.89209 0.91104 0.90593 0.90000 0.89642 0.82374 0.89331 0.93538 0.79696 0.91586 0.90156 0.91079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 9.21 37.16 0.34 -0.83 16 2 C -0.13 -1.13 5.19 -26.73 -0.14 -1.27 16 3 C -0.07 -0.56 1.81 -90.62 -0.16 -0.72 16 4 C -0.12 -0.72 5.15 -26.73 -0.14 -0.86 16 5 C -0.15 -0.88 9.52 37.15 0.35 -0.53 16 6 C -0.14 -1.00 3.99 -27.88 -0.11 -1.11 16 7 C 0.53 5.84 7.55 -10.99 -0.08 5.76 16 8 O -0.53 -7.95 14.30 5.55 0.08 -7.87 16 9 N -0.62 -6.27 3.32 -170.38 -0.57 -6.84 16 10 C 0.10 0.71 6.71 -2.41 -0.02 0.69 16 11 C -0.17 -1.33 6.68 -24.46 -0.16 -1.50 16 12 C 0.08 0.83 3.28 -65.88 -0.22 0.62 16 13 H 0.09 0.89 7.82 -51.93 -0.41 0.48 16 14 N -0.66 -9.49 5.93 -106.05 -0.63 -10.12 16 15 C 0.05 0.76 6.03 -4.98 -0.03 0.73 16 16 C 0.45 9.89 7.82 -10.99 -0.09 9.81 16 17 O -0.56 -14.96 15.78 5.54 0.09 -14.87 16 18 N -0.59 -13.74 5.09 -10.96 -0.06 -13.79 16 19 C -0.31 -8.58 10.16 -14.94 -0.15 -8.73 16 20 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 21 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 22 N -0.88 -25.55 13.96 55.50 0.77 -24.78 16 23 Si 0.88 19.03 27.74 -169.99 -4.71 14.32 16 24 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 25 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 26 H -0.27 -5.28 6.52 56.52 0.37 -4.91 16 27 C 0.12 1.35 6.62 -3.06 -0.02 1.33 16 28 H 0.05 0.35 6.39 -51.93 -0.33 0.02 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.39 6.27 -51.93 -0.33 0.06 16 31 H 0.06 0.51 6.77 -51.93 -0.35 0.16 16 32 H 0.08 0.97 5.93 -51.93 -0.31 0.66 16 33 H 0.08 0.72 7.95 -51.93 -0.41 0.31 16 34 H 0.07 0.36 6.17 -51.93 -0.32 0.04 16 35 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.06 0.34 6.89 -51.93 -0.36 -0.02 16 37 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.09 0.59 5.89 -51.93 -0.31 0.28 16 40 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.08 0.40 7.47 -51.93 -0.39 0.01 16 43 H 0.08 0.71 7.77 -51.93 -0.40 0.31 16 44 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.36 5.37 7.91 -39.29 -0.31 5.06 16 46 H 0.09 1.22 8.08 -51.92 -0.42 0.80 16 47 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 48 H 0.37 7.50 5.76 -40.82 -0.24 7.26 16 49 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 50 H 0.08 1.12 8.03 -51.93 -0.42 0.70 16 51 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 396.15 15.07 5.97 5.97 Total: -1.00 -33.94 396.15 -8.43 -42.37 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -8.65 Total: 11.18 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -0.72 Total: 4.44 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: -0.48 Total: -55.53 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: 0.17 Total: -22.74 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -4.71 Total: 14.32 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.94 -8.43 -42.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186622776.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.085 kcal (2) G-P(sol) polarization free energy of solvation -33.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds