Wall clock time and date at job start Fri Apr 10 2020 18:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47001 * 2 1 4 4 C 1.53000 * 109.47355 * 301.55163 * 3 2 1 5 5 C 1.52993 * 109.47117 * 294.97818 * 4 3 2 6 6 C 1.52998 * 109.47043 * 61.55350 * 3 2 1 7 7 C 1.50701 * 109.47596 * 64.99803 * 6 3 2 8 8 O 1.21285 * 119.99540 * 0.02562 * 7 6 3 9 9 N 1.34770 * 120.00334 * 180.27843 * 7 6 3 10 10 C 1.47418 * 125.64999 * 359.41202 * 9 7 6 11 11 C 1.55132 * 104.72378 * 155.81994 * 10 9 7 12 12 C 1.55158 * 101.48233 * 37.29930 * 11 10 9 13 13 H 1.09001 * 110.87122 * 82.76790 * 12 11 10 14 14 N 1.46902 * 110.71743 * 205.96917 * 12 11 10 15 15 C 1.46899 * 111.00071 * 268.52543 * 14 12 11 16 16 C 1.50697 * 109.47239 * 180.02562 * 15 14 12 17 17 O 1.21296 * 119.99922 * 359.97438 * 16 15 14 18 18 N 1.34780 * 120.00342 * 179.97438 * 16 15 14 19 19 C 1.37088 * 120.00303 * 180.02562 * 18 16 15 20 20 H 1.08002 * 120.00361 * 359.97438 * 19 18 16 21 21 C 1.38956 * 120.00189 * 180.02562 * 19 18 16 22 22 N 1.31409 * 120.00268 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 119.99802 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.46975 * 90.00307 * 23 21 19 25 25 H 1.48499 * 109.47305 * 210.00509 * 23 21 19 26 26 H 1.48503 * 109.47265 * 330.00386 * 23 21 19 27 27 C 1.47032 * 125.64680 * 179.72726 * 9 7 6 28 28 H 1.08998 * 109.47261 * 61.88558 * 1 2 3 29 29 H 1.08999 * 109.46472 * 181.88811 * 1 2 3 30 30 H 1.08997 * 109.46780 * 301.88735 * 1 2 3 31 31 H 1.08999 * 109.47002 * 240.00075 * 2 1 3 32 32 H 1.08998 * 109.47461 * 120.00246 * 2 1 3 33 33 H 1.08999 * 109.46918 * 181.55030 * 3 2 1 34 34 H 1.09003 * 109.46818 * 54.97915 * 4 3 2 35 35 H 1.08998 * 109.47445 * 174.97323 * 4 3 2 36 36 H 1.09007 * 109.47261 * 65.79600 * 5 4 3 37 37 H 1.09000 * 109.47467 * 185.79586 * 5 4 3 38 38 H 1.08999 * 109.47171 * 305.79849 * 5 4 3 39 39 H 1.09002 * 109.47444 * 304.99989 * 6 3 2 40 40 H 1.09001 * 109.47366 * 185.00430 * 6 3 2 41 41 H 1.09006 * 110.37227 * 274.75120 * 10 9 7 42 42 H 1.08999 * 110.36471 * 37.07382 * 10 9 7 43 43 H 1.08996 * 111.19537 * 279.19325 * 11 10 9 44 44 H 1.09002 * 110.93906 * 155.29437 * 11 10 9 45 45 H 1.00906 * 110.99908 * 32.47477 * 14 12 11 46 46 H 1.09009 * 109.46947 * 299.99797 * 15 14 12 47 47 H 1.08996 * 109.47677 * 59.99935 * 15 14 12 48 48 H 0.97004 * 119.99368 * 359.97438 * 18 16 15 49 49 H 0.96991 * 120.00184 * 179.97438 * 22 21 19 50 50 H 1.09003 * 109.87905 * 300.43462 * 27 9 7 51 51 H 1.08991 * 109.88329 * 61.60340 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4984 2.1750 -1.2292 5 6 2.0768 1.5418 -2.4962 6 6 1.5622 2.1524 1.2683 7 6 2.1941 1.5061 2.4742 8 8 2.9525 0.5702 2.3330 9 7 1.9126 1.9648 3.7098 10 6 1.0182 3.0937 4.0240 11 6 0.5467 2.8302 5.4783 12 6 1.8335 2.2462 6.1191 13 1 2.5083 3.0434 6.4308 14 7 1.4997 1.3765 7.2550 15 6 1.4827 2.1360 8.5123 16 6 1.1380 1.2127 9.6523 17 8 0.9269 0.0376 9.4384 18 7 1.0644 1.6926 10.9097 19 6 0.7514 0.8526 11.9468 20 1 0.5634 -0.1938 11.7564 21 6 0.6750 1.3475 13.2430 22 7 0.3755 0.5421 14.2373 23 14 0.9995 3.1573 13.5723 24 1 -0.2741 3.9145 13.4735 25 1 1.5668 3.3186 14.9352 26 1 1.9638 3.6778 12.5700 27 6 2.4519 1.4264 4.9672 28 1 -0.3634 0.4843 -0.9064 29 1 -0.3632 -1.0271 0.0339 30 1 -0.3633 0.5429 0.8726 31 1 1.8934 -0.5138 -0.8900 32 1 1.8935 -0.5138 0.8899 33 1 3.1297 1.4426 -0.0278 34 1 0.4113 2.0980 -1.2483 35 1 1.7875 3.2249 -1.1833 36 1 1.7039 0.5223 -2.5957 37 1 1.7739 2.1258 -3.3652 38 1 3.1647 1.5259 -2.4303 39 1 0.4774 2.0749 1.3413 40 1 1.8494 3.2030 1.2268 41 1 1.5617 4.0367 3.9640 42 1 0.1656 3.1025 3.3450 43 1 -0.2663 2.1047 5.5036 44 1 0.2537 3.7593 5.9672 45 1 0.6195 0.9068 7.1044 46 1 2.4655 2.5749 8.6851 47 1 0.7371 2.9285 8.4481 48 1 1.2337 2.6323 11.0807 49 1 0.3225 0.8875 15.1420 50 1 2.1762 0.3768 5.0694 51 1 3.5369 1.5297 4.9796 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186622776.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:36:36 Heat of formation + Delta-G solvation = -105.967750 kcal Electronic energy + Delta-G solvation = -27602.050855 eV Core-core repulsion = 23727.749771 eV Total energy + Delta-G solvation = -3874.301084 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.31173 -40.32942 -39.22498 -37.70666 -36.21205 -35.57612 -33.74713 -32.19362 -31.91741 -30.80374 -29.79512 -27.92563 -26.14753 -25.19444 -24.38041 -23.81020 -21.89660 -21.29483 -20.49861 -20.27283 -19.65694 -18.18458 -17.66483 -17.44975 -17.07720 -16.80604 -16.45306 -16.16852 -15.96827 -15.61480 -15.28524 -14.97759 -14.72351 -14.47146 -14.42517 -14.12168 -13.94669 -13.88124 -13.69853 -13.60513 -13.38031 -13.08274 -12.99292 -12.82890 -12.79538 -12.67994 -12.40653 -12.38754 -12.26641 -11.97167 -11.95575 -11.77648 -11.50319 -11.42426 -11.34499 -11.21563 -10.66915 -10.44282 -10.24637 -9.65531 -9.30923 -8.40631 -6.02093 1.31512 1.37118 1.46494 1.66158 1.94755 1.96787 2.24449 2.74619 3.15967 3.31165 3.49654 3.65068 3.80904 3.86894 3.95159 4.06908 4.17087 4.20734 4.29511 4.37402 4.41023 4.44739 4.47269 4.56952 4.58859 4.59709 4.64609 4.71465 4.78298 4.84269 4.86623 4.95920 4.98173 5.03863 5.10087 5.12205 5.15858 5.27520 5.34866 5.35058 5.40658 5.50670 5.53414 5.68007 5.91262 6.05702 6.32437 6.55660 6.60342 6.88846 7.20153 7.40388 7.97795 8.77154 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.035450 B = 0.001853 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.652985 B =15110.622378 C =15418.778101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.070 4.070 4 C -0.116 4.116 5 C -0.154 4.154 6 C -0.126 4.126 7 C 0.517 3.483 8 O -0.585 6.585 9 N -0.622 5.622 10 C 0.102 3.898 11 C -0.159 4.159 12 C 0.086 3.914 13 H 0.116 0.884 14 N -0.683 5.683 15 C 0.066 3.934 16 C 0.445 3.555 17 O -0.618 6.618 18 N -0.589 5.589 19 C -0.331 4.331 20 H 0.052 0.948 21 C -0.017 4.017 22 N -0.936 5.936 23 Si 0.968 3.032 24 H -0.255 1.255 25 H -0.277 1.277 26 H -0.228 1.228 27 C 0.115 3.885 28 H 0.073 0.927 29 H 0.044 0.956 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.045 0.955 33 H 0.055 0.945 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.051 0.949 37 H 0.063 0.937 38 H 0.046 0.954 39 H 0.114 0.886 40 H 0.118 0.882 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.070 0.930 44 H 0.112 0.888 45 H 0.347 0.653 46 H 0.116 0.884 47 H 0.089 0.911 48 H 0.391 0.609 49 H 0.279 0.721 50 H 0.045 0.955 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.185 17.003 -30.938 35.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C -0.089 4.089 4 C -0.153 4.153 5 C -0.212 4.212 6 C -0.165 4.165 7 C 0.308 3.692 8 O -0.465 6.465 9 N -0.356 5.356 10 C -0.020 4.020 11 C -0.199 4.199 12 C -0.025 4.025 13 H 0.133 0.867 14 N -0.315 5.315 15 C -0.066 4.066 16 C 0.234 3.766 17 O -0.503 6.503 18 N -0.231 5.231 19 C -0.460 4.460 20 H 0.070 0.930 21 C -0.215 4.215 22 N -0.576 5.576 23 Si 0.787 3.213 24 H -0.179 1.179 25 H -0.203 1.203 26 H -0.152 1.152 27 C -0.009 4.009 28 H 0.092 0.908 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.132 0.868 40 H 0.136 0.864 41 H 0.115 0.885 42 H 0.118 0.882 43 H 0.089 0.911 44 H 0.131 0.869 45 H 0.167 0.833 46 H 0.134 0.866 47 H 0.106 0.894 48 H 0.227 0.773 49 H 0.088 0.912 50 H 0.063 0.937 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.696 15.427 -30.920 34.562 hybrid contribution -0.471 0.189 1.046 1.163 sum 0.224 15.616 -29.873 33.709 Atomic orbital electron populations 1.21876 0.95142 1.01459 1.02364 1.21625 0.96523 0.96876 1.01466 1.20923 0.99711 0.94692 0.93533 1.21603 1.01372 0.99492 0.92818 1.21802 1.00646 1.00995 0.97726 1.21852 1.02718 1.01627 0.90329 1.21179 0.81023 0.82887 0.84132 1.90675 1.38979 1.30742 1.86151 1.48677 1.47343 1.34516 1.05042 1.22593 0.93864 0.89147 0.96412 1.23593 0.97192 1.03396 0.95705 1.22617 0.97496 0.93662 0.88714 0.86654 1.59862 1.40542 1.30288 1.00837 1.21653 1.04164 0.93754 0.86985 1.21094 0.81641 0.89423 0.84486 1.90561 1.55020 1.20118 1.84602 1.42003 1.64225 1.10638 1.06221 1.19003 1.46609 0.93415 0.87006 0.92982 1.26170 0.96192 1.05132 0.94009 1.69811 1.48532 1.38480 1.00802 0.85329 0.80222 0.76328 0.79391 1.17898 1.20274 1.15163 1.21749 0.97970 0.97833 0.83354 0.90792 0.93646 0.92687 0.92200 0.93594 0.92661 0.90375 0.90762 0.92978 0.91779 0.93489 0.86795 0.86408 0.88517 0.88220 0.91086 0.86949 0.83321 0.86599 0.89352 0.77311 0.91162 0.93691 0.92292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.21 71.98 0.66 -1.44 16 2 C -0.13 -2.30 5.19 30.60 0.16 -2.14 16 3 C -0.07 -1.02 1.81 -10.79 -0.02 -1.04 16 4 C -0.12 -1.06 5.15 30.59 0.16 -0.90 16 5 C -0.15 -1.56 9.52 71.98 0.69 -0.87 16 6 C -0.13 -1.56 3.99 29.85 0.12 -1.44 16 7 C 0.52 11.22 7.55 87.66 0.66 11.89 16 8 O -0.59 -18.45 14.30 -3.05 -0.04 -18.50 16 9 N -0.62 -11.65 3.32 -811.35 -2.70 -14.35 16 10 C 0.10 0.98 6.71 86.93 0.58 1.56 16 11 C -0.16 -1.91 6.68 32.06 0.21 -1.70 16 12 C 0.09 1.58 3.28 46.10 0.15 1.73 16 13 H 0.12 1.68 7.82 -2.39 -0.02 1.66 16 14 N -0.68 -18.84 5.93 -489.44 -2.90 -21.74 16 15 C 0.07 1.83 6.03 85.56 0.52 2.34 16 16 C 0.45 19.57 7.82 87.66 0.69 20.25 16 17 O -0.62 -34.31 15.78 -3.08 -0.05 -34.36 16 18 N -0.59 -27.07 5.09 -306.98 -1.56 -28.63 16 19 C -0.33 -19.31 10.16 84.04 0.85 -18.46 16 20 H 0.05 3.65 7.39 -2.91 -0.02 3.63 16 21 C -0.02 -0.91 5.50 84.93 0.47 -0.45 16 22 N -0.94 -56.35 13.96 21.66 0.30 -56.05 16 23 Si 0.97 37.83 27.74 68.60 1.90 39.73 16 24 H -0.25 -9.31 7.11 99.48 0.71 -8.60 16 25 H -0.28 -10.89 7.11 99.48 0.71 -10.19 16 26 H -0.23 -7.37 6.52 99.48 0.65 -6.72 16 27 C 0.11 2.69 6.62 86.73 0.57 3.27 16 28 H 0.07 0.75 6.39 -2.39 -0.02 0.74 16 29 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.05 0.72 6.27 -2.39 -0.01 0.71 16 31 H 0.06 1.05 6.77 -2.39 -0.02 1.03 16 32 H 0.05 1.17 5.93 -2.39 -0.01 1.16 16 33 H 0.05 1.05 7.95 -2.39 -0.02 1.03 16 34 H 0.08 0.57 6.17 -2.39 -0.01 0.55 16 35 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.05 0.57 6.89 -2.38 -0.02 0.56 16 37 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.11 1.00 5.89 -2.39 -0.01 0.99 16 40 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 42 H 0.10 0.55 7.47 -2.39 -0.02 0.53 16 43 H 0.07 1.05 7.77 -2.39 -0.02 1.03 16 44 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.35 10.47 7.91 -89.69 -0.71 9.76 16 46 H 0.12 2.65 8.08 -2.38 -0.02 2.63 16 47 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 48 H 0.39 14.52 5.76 -92.71 -0.53 13.98 16 49 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 50 H 0.04 1.35 8.03 -2.39 -0.02 1.33 16 51 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -84.47 396.15 1.05 -83.42 By element: Atomic # 1 Polarization: 38.24 SS G_CDS: -0.37 Total: 37.87 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: 6.47 Total: 12.61 kcal Atomic # 7 Polarization: -113.91 SS G_CDS: -6.86 Total: -120.77 kcal Atomic # 8 Polarization: -52.77 SS G_CDS: -0.09 Total: -52.86 kcal Atomic # 14 Polarization: 37.83 SS G_CDS: 1.90 Total: 39.73 kcal Total: -84.47 1.05 -83.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186622776.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.548 kcal (2) G-P(sol) polarization free energy of solvation -84.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds