Wall clock time and date at job start Fri Apr 10 2020 18:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42911 * 1 3 3 C 1.42901 * 113.99376 * 2 1 4 4 C 1.50708 * 109.46817 * 180.02562 * 3 2 1 5 5 O 1.21285 * 119.99787 * 0.02562 * 4 3 2 6 6 N 1.34771 * 120.00340 * 180.02562 * 4 3 2 7 7 C 1.46502 * 119.99522 * 0.02562 * 6 4 3 8 8 C 1.46495 * 120.00239 * 179.97438 * 6 4 3 9 9 C 1.50696 * 109.47349 * 270.00299 * 8 6 4 10 10 O 1.21281 * 119.99784 * 359.97438 * 9 8 6 11 11 N 1.34777 * 120.00120 * 179.97438 * 9 8 6 12 12 C 1.47402 * 125.58668 * 0.02562 * 11 9 8 13 13 C 1.54871 * 104.81463 * 204.37965 * 12 11 9 14 14 C 1.55170 * 101.73106 * 322.76912 * 13 12 11 15 15 H 1.09003 * 113.89834 * 158.47759 * 14 13 12 16 16 C 1.53752 * 108.31339 * 285.38180 * 14 13 12 17 17 N 1.46588 * 108.10698 * 124.37822 * 16 14 13 18 18 C 1.36943 * 125.30989 * 181.24797 * 17 16 14 19 19 H 1.08002 * 119.99788 * 359.97438 * 18 17 16 20 20 C 1.38811 * 119.99622 * 180.27725 * 18 17 16 21 21 N 1.31614 * 120.00467 * 359.72375 * 20 18 17 22 22 Si 1.86801 * 119.99700 * 179.72266 * 20 18 17 23 23 H 1.48504 * 109.47306 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47021 * 119.99661 * 22 20 18 25 25 H 1.48501 * 109.47039 * 240.00078 * 22 20 18 26 26 C 1.46708 * 109.37833 * 1.51395 * 17 16 14 27 27 C 1.46709 * 125.58921 * 179.97438 * 11 9 8 28 28 H 1.09005 * 111.52984 * 56.12536 * 27 11 9 29 29 H 1.09001 * 109.46983 * 59.99757 * 1 2 3 30 30 H 1.09000 * 109.46559 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46675 * 299.99643 * 1 2 3 32 32 H 1.09003 * 109.47039 * 60.00502 * 3 2 1 33 33 H 1.08988 * 109.47341 * 299.99901 * 3 2 1 34 34 H 1.08996 * 109.47324 * 269.99622 * 7 6 4 35 35 H 1.09001 * 109.47458 * 30.00186 * 7 6 4 36 36 H 1.09002 * 109.47034 * 149.99988 * 7 6 4 37 37 H 1.09002 * 109.46756 * 149.99948 * 8 6 4 38 38 H 1.09001 * 109.46870 * 30.00271 * 8 6 4 39 39 H 1.08995 * 110.36934 * 323.21089 * 12 11 9 40 40 H 1.09003 * 110.37111 * 85.43750 * 12 11 9 41 41 H 1.09007 * 110.97157 * 204.66020 * 13 12 11 42 42 H 1.08997 * 110.97539 * 80.88456 * 13 12 11 43 43 H 1.09002 * 109.74632 * 4.70482 * 16 14 13 44 44 H 1.08999 * 109.74403 * 244.04996 * 16 14 13 45 45 H 0.96995 * 120.00147 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.98651 * 101.17710 * 26 17 16 47 47 H 1.08999 * 109.98695 * 222.48852 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1866 -0.0006 5 8 4.0342 0.0917 -0.0015 6 7 4.2765 2.2969 -0.0002 7 6 3.6463 3.6195 0.0014 8 6 5.7369 2.1813 -0.0003 9 6 6.2377 2.1410 1.4205 10 8 5.4520 2.2033 2.3423 11 7 7.5586 2.0358 1.6667 12 6 8.6176 1.9524 0.6448 13 6 9.7955 1.2382 1.3527 14 6 9.7084 1.8296 2.7846 15 1 10.1906 1.2163 3.5458 16 6 10.2380 3.2725 2.7444 17 7 9.1977 4.1548 3.2812 18 6 9.2909 5.5172 3.3842 19 1 10.1864 6.0235 3.0553 20 6 8.2370 6.2466 3.9171 21 7 7.1459 5.6295 4.3183 22 14 8.3673 8.1042 4.0647 23 1 9.6858 8.5507 3.5477 24 1 7.2836 8.7408 3.2738 25 1 8.2362 8.4978 5.4906 26 6 8.0436 3.3500 3.6967 27 6 8.1781 1.9867 2.9956 28 1 7.7699 1.1748 3.5975 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.6886 1.8464 0.8901 33 1 1.6886 1.8464 -0.8899 34 1 3.4893 3.9484 -1.0258 35 1 2.6870 3.5643 0.5159 36 1 4.2939 4.3298 0.5154 37 1 6.1692 3.0400 -0.5138 38 1 6.0288 1.2656 -0.5145 39 1 8.2762 1.3663 -0.2084 40 1 8.9148 2.9508 0.3239 41 1 10.7454 1.4928 0.8825 42 1 9.6457 0.1587 1.3665 43 1 10.4643 3.5532 1.7158 44 1 11.1383 3.3514 3.3539 45 1 6.4094 6.1393 4.6903 46 1 8.0516 3.2179 4.7786 47 1 7.1189 3.8371 3.3873 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188125665.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:02 Heat of formation + Delta-G solvation = -58.743651 kcal Electronic energy + Delta-G solvation = -29317.353047 eV Core-core repulsion = 25309.266659 eV Total energy + Delta-G solvation = -4008.086388 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.39151 -39.67166 -37.93947 -37.24266 -35.29646 -34.70527 -32.22492 -30.79445 -30.23832 -28.89248 -27.87461 -26.58233 -26.26300 -25.24791 -24.63147 -22.46618 -20.91508 -19.88539 -19.28270 -18.40583 -17.47158 -17.18985 -16.73010 -16.67408 -16.34182 -15.83367 -15.53570 -15.06903 -14.69478 -14.56077 -14.11479 -13.90708 -13.74267 -13.22452 -13.11890 -12.96563 -12.79629 -12.66970 -12.40952 -12.32792 -12.07288 -11.90183 -11.68004 -11.58366 -11.48132 -11.10263 -11.01349 -10.75815 -10.50112 -10.25995 -10.10723 -9.99705 -9.80046 -9.78048 -9.67613 -9.56757 -8.66817 -8.53211 -8.03279 -6.78958 -5.62809 -3.04169 2.46654 2.68864 3.15127 3.38416 3.43977 3.46744 3.50359 3.80695 4.47948 4.48500 4.71011 4.84889 4.85164 4.93436 5.08380 5.09708 5.13899 5.16585 5.20097 5.24210 5.35196 5.42676 5.48137 5.49202 5.56729 5.65477 5.73527 5.78731 5.82118 5.92232 6.07191 6.23122 6.29340 6.38356 6.56402 6.63023 6.69550 6.77167 6.91102 7.27661 7.51303 7.67357 7.95830 8.06434 8.15449 8.41045 8.71245 9.24631 9.86242 10.49381 11.41389 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.013501 B = 0.003795 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.487094 B = 7376.641641 C = 8783.956129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.368 6.368 3 C 0.047 3.953 4 C 0.521 3.479 5 O -0.520 6.520 6 N -0.596 5.596 7 C 0.078 3.922 8 C 0.104 3.896 9 C 0.513 3.487 10 O -0.524 6.524 11 N -0.598 5.598 12 C 0.101 3.899 13 C -0.123 4.123 14 C -0.111 4.111 15 H 0.095 0.905 16 C 0.143 3.857 17 N -0.600 5.600 18 C -0.228 4.228 19 H 0.077 0.923 20 C -0.008 4.008 21 N -0.913 5.913 22 Si 0.911 3.089 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.157 3.843 27 C 0.115 3.885 28 H 0.076 0.924 29 H 0.042 0.958 30 H 0.090 0.910 31 H 0.044 0.956 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.025 0.975 44 H 0.020 0.980 45 H 0.251 0.749 46 H 0.020 0.980 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.405 -7.647 -12.649 16.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C -0.032 4.032 4 C 0.308 3.692 5 O -0.395 6.395 6 N -0.331 5.331 7 C -0.065 4.065 8 C -0.022 4.022 9 C 0.299 3.701 10 O -0.400 6.400 11 N -0.333 5.333 12 C -0.022 4.022 13 C -0.161 4.161 14 C -0.130 4.130 15 H 0.114 0.886 16 C 0.016 3.984 17 N -0.326 5.326 18 C -0.356 4.356 19 H 0.095 0.905 20 C -0.205 4.205 21 N -0.561 5.561 22 Si 0.741 3.259 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.218 1.218 26 C 0.031 3.969 27 C 0.011 3.989 28 H 0.094 0.906 29 H 0.061 0.939 30 H 0.108 0.892 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.101 0.899 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.100 0.900 42 H 0.089 0.911 43 H 0.043 0.957 44 H 0.038 0.962 45 H 0.062 0.938 46 H 0.038 0.962 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.684 -8.184 -12.101 16.065 hybrid contribution -0.053 1.443 0.264 1.468 sum -6.737 -6.741 -11.837 15.196 Atomic orbital electron populations 1.22831 0.80477 1.03222 1.00108 1.88014 1.19697 1.25395 1.95418 1.22255 0.91586 0.86791 1.02597 1.20172 0.88714 0.84059 0.76218 1.90709 1.74477 1.26213 1.48052 1.47279 1.05356 1.06664 1.73761 1.21894 0.99316 0.83738 1.01556 1.21281 0.80556 1.05123 0.95265 1.20487 0.81020 0.77000 0.91557 1.90716 1.54291 1.49043 1.45917 1.48237 1.04769 1.72419 1.07875 1.22312 0.88066 1.00612 0.91257 1.22773 0.98011 0.99574 0.95727 1.23059 0.95498 0.97892 0.96562 0.88640 1.21172 0.92504 0.87954 0.96725 1.44211 1.13197 1.02292 1.72916 1.19052 1.00679 0.80527 1.35369 0.90509 1.24823 0.96535 0.98034 1.01076 1.69938 1.05857 1.33148 1.47152 0.86065 0.77149 0.85280 0.77373 1.20580 1.21851 1.21776 1.21687 0.94198 0.86123 0.94854 1.22649 0.91206 1.00845 0.84214 0.90610 0.93904 0.89158 0.93721 0.89839 0.90275 0.92188 0.90955 0.89901 0.87475 0.87300 0.91365 0.90917 0.90023 0.91068 0.95745 0.96239 0.93803 0.96230 0.87657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.37 16 2 O -0.37 -4.94 10.24 -55.14 -0.56 -5.50 16 3 C 0.05 0.56 4.97 36.01 0.18 0.73 16 4 C 0.52 8.15 7.75 -10.98 -0.09 8.06 16 5 O -0.52 -10.23 16.08 -14.36 -0.23 -10.46 16 6 N -0.60 -8.47 2.36 -182.96 -0.43 -8.90 16 7 C 0.08 0.85 10.24 59.85 0.61 1.46 16 8 C 0.10 1.53 4.89 -5.20 -0.03 1.50 16 9 C 0.51 9.98 7.55 -10.99 -0.08 9.90 16 10 O -0.52 -12.41 16.15 5.56 0.09 -12.32 16 11 N -0.60 -11.03 3.02 -162.20 -0.49 -11.52 16 12 C 0.10 1.43 6.23 -2.56 -0.02 1.41 16 13 C -0.12 -1.59 6.30 -24.60 -0.16 -1.74 16 14 C -0.11 -1.85 4.25 -87.88 -0.37 -2.22 16 15 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 16 C 0.14 2.85 6.41 -3.60 -0.02 2.83 16 17 N -0.60 -15.25 3.38 -171.99 -0.58 -15.83 16 18 C -0.23 -6.32 10.25 -15.06 -0.15 -6.47 16 19 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 20 C -0.01 -0.24 5.48 -17.43 -0.10 -0.33 16 21 N -0.91 -27.29 10.16 55.49 0.56 -26.73 16 22 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 C 0.16 3.99 5.19 -3.47 -0.02 3.97 16 27 C 0.11 2.32 3.65 -66.15 -0.24 2.08 16 28 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 29 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.08 0.87 7.40 -51.93 -0.38 0.48 16 33 H 0.08 0.65 8.11 -51.94 -0.42 0.23 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.67 6.44 -51.93 -0.33 0.34 16 36 H 0.08 1.06 8.07 -51.93 -0.42 0.64 16 37 H 0.11 1.29 8.07 -51.93 -0.42 0.88 16 38 H 0.11 1.51 7.12 -51.93 -0.37 1.14 16 39 H 0.07 0.77 7.46 -51.93 -0.39 0.38 16 40 H 0.07 1.09 7.49 -51.93 -0.39 0.70 16 41 H 0.08 0.90 7.96 -51.93 -0.41 0.49 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.02 0.47 6.78 -51.93 -0.35 0.12 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 46 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.11 3.08 5.31 -51.93 -0.28 2.81 16 LS Contribution 376.08 15.07 5.67 5.67 Total: -1.00 -38.17 376.08 -7.88 -46.05 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -7.52 Total: -0.05 kcal Atomic # 6 Polarization: 21.92 SS G_CDS: 0.63 Total: 22.55 kcal Atomic # 7 Polarization: -62.05 SS G_CDS: -0.94 Total: -62.98 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -0.71 Total: -28.28 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -38.17 -7.88 -46.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188125665.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.693 kcal (2) G-P(sol) polarization free energy of solvation -38.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds