Wall clock time and date at job start Fri Apr 10 2020 18:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42911 * 1 3 3 C 1.42901 * 113.99376 * 2 1 4 4 C 1.50708 * 109.46817 * 180.02562 * 3 2 1 5 5 O 1.21285 * 119.99787 * 0.02562 * 4 3 2 6 6 N 1.34771 * 120.00340 * 180.02562 * 4 3 2 7 7 C 1.46502 * 119.99522 * 0.02562 * 6 4 3 8 8 C 1.46495 * 120.00239 * 179.97438 * 6 4 3 9 9 C 1.50696 * 109.47349 * 270.00299 * 8 6 4 10 10 O 1.21281 * 119.99784 * 359.97438 * 9 8 6 11 11 N 1.34777 * 120.00120 * 179.97438 * 9 8 6 12 12 C 1.47402 * 125.58668 * 0.02562 * 11 9 8 13 13 C 1.54871 * 104.81463 * 204.37965 * 12 11 9 14 14 C 1.55170 * 101.73106 * 322.76912 * 13 12 11 15 15 H 1.09003 * 113.89834 * 158.47759 * 14 13 12 16 16 C 1.53752 * 108.31339 * 285.38180 * 14 13 12 17 17 N 1.46588 * 108.10698 * 124.37822 * 16 14 13 18 18 C 1.36943 * 125.30989 * 181.24797 * 17 16 14 19 19 H 1.08002 * 119.99788 * 359.97438 * 18 17 16 20 20 C 1.38811 * 119.99622 * 180.27725 * 18 17 16 21 21 N 1.31614 * 120.00467 * 359.72375 * 20 18 17 22 22 Si 1.86801 * 119.99700 * 179.72266 * 20 18 17 23 23 H 1.48504 * 109.47306 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47021 * 119.99661 * 22 20 18 25 25 H 1.48501 * 109.47039 * 240.00078 * 22 20 18 26 26 C 1.46708 * 109.37833 * 1.51395 * 17 16 14 27 27 C 1.46709 * 125.58921 * 179.97438 * 11 9 8 28 28 H 1.09005 * 111.52984 * 56.12536 * 27 11 9 29 29 H 1.09001 * 109.46983 * 59.99757 * 1 2 3 30 30 H 1.09000 * 109.46559 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46675 * 299.99643 * 1 2 3 32 32 H 1.09003 * 109.47039 * 60.00502 * 3 2 1 33 33 H 1.08988 * 109.47341 * 299.99901 * 3 2 1 34 34 H 1.08996 * 109.47324 * 269.99622 * 7 6 4 35 35 H 1.09001 * 109.47458 * 30.00186 * 7 6 4 36 36 H 1.09002 * 109.47034 * 149.99988 * 7 6 4 37 37 H 1.09002 * 109.46756 * 149.99948 * 8 6 4 38 38 H 1.09001 * 109.46870 * 30.00271 * 8 6 4 39 39 H 1.08995 * 110.36934 * 323.21089 * 12 11 9 40 40 H 1.09003 * 110.37111 * 85.43750 * 12 11 9 41 41 H 1.09007 * 110.97157 * 204.66020 * 13 12 11 42 42 H 1.08997 * 110.97539 * 80.88456 * 13 12 11 43 43 H 1.09002 * 109.74632 * 4.70482 * 16 14 13 44 44 H 1.08999 * 109.74403 * 244.04996 * 16 14 13 45 45 H 0.96995 * 120.00147 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.98651 * 101.17710 * 26 17 16 47 47 H 1.08999 * 109.98695 * 222.48852 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1866 -0.0006 5 8 4.0342 0.0917 -0.0015 6 7 4.2765 2.2969 -0.0002 7 6 3.6463 3.6195 0.0014 8 6 5.7369 2.1813 -0.0003 9 6 6.2377 2.1410 1.4205 10 8 5.4520 2.2033 2.3423 11 7 7.5586 2.0358 1.6667 12 6 8.6176 1.9524 0.6448 13 6 9.7955 1.2382 1.3527 14 6 9.7084 1.8296 2.7846 15 1 10.1906 1.2163 3.5458 16 6 10.2380 3.2725 2.7444 17 7 9.1977 4.1548 3.2812 18 6 9.2909 5.5172 3.3842 19 1 10.1864 6.0235 3.0553 20 6 8.2370 6.2466 3.9171 21 7 7.1459 5.6295 4.3183 22 14 8.3673 8.1042 4.0647 23 1 9.6858 8.5507 3.5477 24 1 7.2836 8.7408 3.2738 25 1 8.2362 8.4978 5.4906 26 6 8.0436 3.3500 3.6967 27 6 8.1781 1.9867 2.9956 28 1 7.7699 1.1748 3.5975 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.6886 1.8464 0.8901 33 1 1.6886 1.8464 -0.8899 34 1 3.4893 3.9484 -1.0258 35 1 2.6870 3.5643 0.5159 36 1 4.2939 4.3298 0.5154 37 1 6.1692 3.0400 -0.5138 38 1 6.0288 1.2656 -0.5145 39 1 8.2762 1.3663 -0.2084 40 1 8.9148 2.9508 0.3239 41 1 10.7454 1.4928 0.8825 42 1 9.6457 0.1587 1.3665 43 1 10.4643 3.5532 1.7158 44 1 11.1383 3.3514 3.3539 45 1 6.4094 6.1393 4.6903 46 1 8.0516 3.2179 4.7786 47 1 7.1189 3.8371 3.3873 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188125665.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:01 Heat of formation + Delta-G solvation = -86.521780 kcal Electronic energy + Delta-G solvation = -29318.557597 eV Core-core repulsion = 25309.266659 eV Total energy + Delta-G solvation = -4009.290938 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.75015 -40.94469 -39.27290 -38.35616 -36.53470 -36.43974 -34.00572 -32.42658 -31.47066 -30.38406 -28.95789 -27.88942 -27.34569 -26.61533 -26.17058 -23.79598 -22.64935 -21.24127 -20.62892 -19.81074 -18.95488 -18.53804 -18.21887 -17.75112 -17.45784 -17.04513 -16.87015 -16.59179 -16.16685 -15.66467 -15.65118 -15.39744 -15.10594 -14.57297 -14.45916 -14.16980 -13.99261 -13.92473 -13.79089 -13.43419 -13.37249 -13.16471 -13.02811 -12.99981 -12.86205 -12.82253 -12.46359 -12.34848 -12.03830 -11.90386 -11.83437 -11.58070 -11.38893 -11.10691 -10.94544 -10.78493 -10.74104 -9.78978 -9.56619 -8.86361 -7.77325 -5.21602 1.32504 1.43552 1.45458 1.55821 1.64350 1.69939 2.19505 2.48358 2.94023 3.33516 3.38537 3.52234 3.62338 3.77306 3.81035 3.99949 4.03779 4.15284 4.16489 4.23292 4.26140 4.29206 4.49020 4.50175 4.51884 4.56072 4.62846 4.65970 4.75286 4.84604 4.86477 4.87605 4.95968 5.13242 5.16070 5.19070 5.30955 5.37258 5.48004 5.59604 5.87732 5.97258 6.25345 6.29191 6.64013 7.00648 7.09255 7.23940 7.80262 8.42262 9.25277 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.013501 B = 0.003795 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.487094 B = 7376.641641 C = 8783.956129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.407 6.407 3 C 0.051 3.949 4 C 0.510 3.490 5 O -0.571 6.571 6 N -0.598 5.598 7 C 0.074 3.926 8 C 0.111 3.889 9 C 0.499 3.501 10 O -0.582 6.582 11 N -0.601 5.601 12 C 0.093 3.907 13 C -0.106 4.106 14 C -0.099 4.099 15 H 0.115 0.885 16 C 0.137 3.863 17 N -0.618 5.618 18 C -0.236 4.236 19 H 0.087 0.913 20 C -0.070 4.070 21 N -0.948 5.948 22 Si 0.979 3.021 23 H -0.261 1.261 24 H -0.292 1.292 25 H -0.298 1.298 26 C 0.170 3.830 27 C 0.116 3.884 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.053 0.947 32 H 0.094 0.906 33 H 0.121 0.879 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.056 0.944 37 H 0.137 0.863 38 H 0.121 0.879 39 H 0.106 0.894 40 H 0.068 0.932 41 H 0.114 0.886 42 H 0.093 0.907 43 H 0.044 0.956 44 H 0.024 0.976 45 H 0.241 0.759 46 H -0.029 1.029 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.394 -7.587 -15.627 18.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.326 6.326 3 C -0.028 4.028 4 C 0.299 3.701 5 O -0.450 6.450 6 N -0.331 5.331 7 C -0.068 4.068 8 C -0.015 4.015 9 C 0.287 3.713 10 O -0.461 6.461 11 N -0.335 5.335 12 C -0.028 4.028 13 C -0.144 4.144 14 C -0.118 4.118 15 H 0.133 0.867 16 C 0.012 3.988 17 N -0.344 5.344 18 C -0.365 4.365 19 H 0.105 0.895 20 C -0.262 4.262 21 N -0.598 5.598 22 Si 0.808 3.192 23 H -0.185 1.185 24 H -0.219 1.219 25 H -0.225 1.225 26 C 0.043 3.957 27 C 0.010 3.990 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.115 0.885 31 H 0.072 0.928 32 H 0.112 0.888 33 H 0.138 0.862 34 H 0.119 0.881 35 H 0.105 0.895 36 H 0.075 0.925 37 H 0.154 0.846 38 H 0.139 0.861 39 H 0.124 0.876 40 H 0.086 0.914 41 H 0.132 0.868 42 H 0.111 0.889 43 H 0.062 0.938 44 H 0.042 0.958 45 H 0.051 0.949 46 H -0.011 1.011 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.618 -8.107 -15.134 18.064 hybrid contribution -0.349 1.439 1.240 1.931 sum -5.967 -6.669 -13.893 16.526 Atomic orbital electron populations 1.23057 0.78127 1.04285 1.01672 1.87959 1.22335 1.26550 1.95774 1.22360 0.88723 0.86813 1.04930 1.20994 0.90535 0.83512 0.75036 1.90666 1.75670 1.28055 1.50614 1.47494 1.05258 1.07648 1.72658 1.22113 0.99056 0.81592 1.04014 1.21342 0.81283 1.06904 0.92003 1.21519 0.81015 0.75682 0.93090 1.90677 1.55853 1.51583 1.48031 1.48396 1.05514 1.71462 1.08081 1.22646 0.87389 1.01374 0.91422 1.22819 0.98862 1.00464 0.92247 1.23076 0.91932 0.96616 1.00185 0.86656 1.21439 0.91220 0.88947 0.97194 1.44469 1.14625 1.02368 1.72947 1.19492 1.00697 0.82004 1.34312 0.89503 1.25711 0.96362 1.02666 1.01504 1.70253 1.06545 1.34485 1.48505 0.84992 0.77783 0.79775 0.76669 1.18502 1.21862 1.22513 1.21270 0.92892 0.88896 0.92615 1.22377 0.94350 0.97056 0.85169 0.91704 0.91544 0.88506 0.92849 0.88793 0.86178 0.88052 0.89507 0.92456 0.84564 0.86087 0.87607 0.91400 0.86772 0.88862 0.93817 0.95778 0.94900 1.01078 0.91953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 11.01 113.37 1.25 1.62 16 2 O -0.41 -10.64 10.24 -129.94 -1.33 -11.97 16 3 C 0.05 1.12 4.97 71.24 0.35 1.47 16 4 C 0.51 15.77 7.75 87.66 0.68 16.45 16 5 O -0.57 -22.83 16.08 15.99 0.26 -22.57 16 6 N -0.60 -16.53 2.36 -851.14 -2.01 -18.54 16 7 C 0.07 1.51 10.24 127.77 1.31 2.82 16 8 C 0.11 3.16 4.89 85.63 0.42 3.58 16 9 C 0.50 19.83 7.55 87.66 0.66 20.49 16 10 O -0.58 -29.24 16.15 -3.03 -0.05 -29.29 16 11 N -0.60 -22.03 3.02 -785.46 -2.37 -24.40 16 12 C 0.09 2.35 6.23 86.85 0.54 2.89 16 13 C -0.11 -2.29 6.30 31.98 0.20 -2.09 16 14 C -0.10 -3.10 4.25 -9.02 -0.04 -3.14 16 15 H 0.12 3.18 8.14 -2.39 -0.02 3.16 16 16 C 0.14 5.25 6.41 86.62 0.56 5.81 16 17 N -0.62 -31.97 3.38 -698.05 -2.36 -34.33 16 18 C -0.24 -13.24 10.25 84.03 0.86 -12.38 16 19 H 0.09 4.58 7.83 -2.91 -0.02 4.56 16 20 C -0.07 -4.06 5.48 84.86 0.47 -3.59 16 21 N -0.95 -59.82 10.16 21.65 0.22 -59.60 16 22 Si 0.98 46.26 29.55 68.60 2.03 48.29 16 23 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 24 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 25 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 26 C 0.17 9.14 5.19 86.64 0.45 9.59 16 27 C 0.12 4.78 3.65 46.03 0.17 4.95 16 28 H 0.06 2.78 8.14 -2.38 -0.02 2.76 16 29 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.09 1.84 7.40 -2.39 -0.02 1.82 16 33 H 0.12 1.59 8.11 -2.39 -0.02 1.57 16 34 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.09 1.49 6.44 -2.39 -0.02 1.48 16 36 H 0.06 1.48 8.07 -2.39 -0.02 1.46 16 37 H 0.14 3.02 8.07 -2.39 -0.02 3.00 16 38 H 0.12 3.16 7.12 -2.39 -0.02 3.14 16 39 H 0.11 1.93 7.46 -2.39 -0.02 1.91 16 40 H 0.07 1.81 7.49 -2.39 -0.02 1.79 16 41 H 0.11 1.83 7.96 -2.38 -0.02 1.81 16 42 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.04 1.54 6.78 -2.39 -0.02 1.52 16 44 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.24 14.95 8.31 -92.71 -0.77 14.18 16 46 H -0.03 -1.75 8.14 -2.39 -0.02 -1.77 16 47 H 0.06 3.92 5.31 -2.39 -0.01 3.90 16 Total: -1.00 -91.63 376.08 3.23 -88.40 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 0.96 Total: 15.55 kcal Atomic # 6 Polarization: 40.58 SS G_CDS: 7.87 Total: 48.45 kcal Atomic # 7 Polarization: -130.35 SS G_CDS: -6.52 Total: -136.87 kcal Atomic # 8 Polarization: -62.71 SS G_CDS: -1.12 Total: -63.83 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -91.63 3.23 -88.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188125665.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.880 kcal (2) G-P(sol) polarization free energy of solvation -91.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds