Wall clock time and date at job start Fri Apr 10 2020 18:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46902 * 110.99898 * 2 1 4 4 C 1.50696 * 109.47434 * 293.95943 * 3 2 1 5 5 O 1.21293 * 120.00039 * 359.97438 * 4 3 2 6 6 N 1.34780 * 120.00446 * 180.02562 * 4 3 2 7 7 C 1.37092 * 120.00187 * 179.97438 * 6 4 3 8 8 H 1.08001 * 119.99878 * 0.02562 * 7 6 4 9 9 C 1.38947 * 119.99803 * 179.97438 * 7 6 4 10 10 N 1.31407 * 120.00211 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99910 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47229 * 60.00212 * 11 9 7 13 13 H 1.48506 * 109.47336 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47144 * 300.00228 * 11 9 7 15 15 C 1.46900 * 111.00322 * 123.95741 * 2 1 3 16 16 H 1.09004 * 110.91514 * 297.76310 * 15 2 1 17 17 C 1.55152 * 111.00405 * 61.66830 * 15 2 1 18 18 C 1.54316 * 102.94497 * 153.57681 * 17 15 2 19 19 N 1.47287 * 107.30470 * 337.81870 * 18 17 15 20 20 C 1.34778 * 125.79443 * 178.92850 * 19 18 17 21 21 O 1.21281 * 120.00268 * 179.97438 * 20 19 18 22 22 C 1.50700 * 120.00121 * 359.97438 * 20 19 18 23 23 H 1.08998 * 109.82406 * 55.70202 * 22 20 19 24 24 C 1.54386 * 109.83066 * 294.82084 * 22 20 19 25 25 C 1.55451 * 102.18308 * 219.18194 * 24 22 20 26 26 C 1.54949 * 100.99168 * 34.03533 * 25 24 22 27 27 O 1.43230 * 109.83334 * 176.58904 * 22 20 19 28 28 C 1.47425 * 108.55967 * 358.91985 * 19 18 17 29 29 H 1.08999 * 109.46608 * 301.82679 * 1 2 3 30 30 H 1.08992 * 109.47378 * 61.82340 * 1 2 3 31 31 H 1.08997 * 109.46915 * 181.83158 * 1 2 3 32 32 H 1.09007 * 109.47039 * 53.95788 * 3 2 1 33 33 H 1.08998 * 109.47257 * 173.95563 * 3 2 1 34 34 H 0.96997 * 119.99341 * 359.97438 * 6 4 3 35 35 H 0.97000 * 120.00331 * 179.97438 * 10 9 7 36 36 H 1.09011 * 110.71718 * 271.94035 * 17 15 2 37 37 H 1.08997 * 110.72167 * 35.21094 * 17 15 2 38 38 H 1.09005 * 109.88233 * 97.22030 * 18 17 15 39 39 H 1.08995 * 109.88568 * 218.23238 * 18 17 15 40 40 H 1.09000 * 110.84366 * 337.31617 * 24 22 20 41 41 H 1.08996 * 110.84992 * 100.93927 * 24 22 20 42 42 H 1.09007 * 111.05876 * 276.11745 * 25 24 22 43 43 H 1.09002 * 111.15074 * 151.99347 * 25 24 22 44 44 H 1.09005 * 110.30715 * 204.68913 * 26 25 24 45 45 H 1.08997 * 110.38890 * 82.56561 * 26 25 24 46 46 H 1.08998 * 110.37055 * 265.26783 * 28 19 18 47 47 H 1.09005 * 110.36541 * 143.04913 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0472 -1.2983 5 8 1.0053 1.4455 -2.1411 6 7 2.0188 3.3200 -1.5236 7 6 1.6930 3.9346 -2.7050 8 1 1.1299 3.3989 -3.4550 9 6 2.0863 5.2469 -2.9370 10 7 2.7709 5.8987 -2.0242 11 14 1.6417 6.0845 -4.5463 12 1 0.1645 6.1214 -4.6937 13 1 2.1744 7.4707 -4.5466 14 1 2.2333 5.3272 -5.6785 15 6 1.9956 -0.7660 1.1375 16 1 1.6922 -0.3166 2.0831 17 6 1.5532 -2.2511 1.0604 18 6 2.6691 -2.9849 1.8335 19 7 3.8574 -2.1148 1.8185 20 6 5.0403 -2.3859 2.4048 21 8 5.9527 -1.5908 2.3256 22 6 5.2292 -3.6768 3.1589 23 1 4.9979 -4.5214 2.5098 24 6 4.3071 -3.7000 4.3969 25 6 5.2152 -4.3635 5.4701 26 6 6.6061 -3.8193 5.0575 27 8 6.5810 -3.7758 3.6219 28 6 3.5369 -0.8959 1.0536 29 1 -0.3632 0.5420 0.8732 30 1 -0.3634 0.4852 -0.9058 31 1 -0.3633 -1.0271 0.0328 32 1 1.5611 1.9274 0.8310 33 1 3.0797 1.3445 0.1082 34 1 2.5242 3.8011 -0.8499 35 1 3.0458 6.8147 -2.1863 36 1 0.5888 -2.3921 1.5487 37 1 1.5152 -2.5889 0.0247 38 1 2.3530 -3.1621 2.8615 39 1 2.8953 -3.9335 1.3467 40 1 4.0314 -2.6882 4.6942 41 1 3.4205 -4.3054 4.2090 42 1 5.1804 -5.4504 5.3948 43 1 4.9454 -4.0323 6.4729 44 1 7.3925 -4.4909 5.4021 45 1 6.7584 -2.8194 5.4638 46 1 3.8525 -1.0051 0.0160 47 1 4.0160 -0.0274 1.5057 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188766115.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:20 Heat of formation + Delta-G solvation = -122.795713 kcal Electronic energy + Delta-G solvation = -28074.323525 eV Core-core repulsion = 24063.459631 eV Total energy + Delta-G solvation = -4010.863894 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.66028 -40.56213 -39.76052 -38.65629 -36.77535 -35.79718 -33.33168 -33.27133 -32.17212 -30.98226 -29.52568 -29.31853 -26.74144 -25.74832 -24.43688 -23.38092 -22.69219 -21.42447 -20.93460 -20.36952 -19.84384 -18.75276 -17.87540 -17.80624 -17.16840 -16.89690 -16.69265 -16.56937 -16.20461 -16.05434 -15.53560 -15.42121 -15.05094 -14.71643 -14.66250 -14.26135 -14.17085 -14.01883 -13.75907 -13.59881 -13.40784 -13.10155 -12.94930 -12.87669 -12.70786 -12.54680 -12.44761 -12.38477 -12.14231 -12.11625 -11.95863 -11.86582 -11.80209 -11.45760 -11.29979 -10.42121 -10.29678 -10.01588 -9.75468 -9.26166 -8.46876 -5.95926 1.38974 1.40568 1.45859 1.51816 1.68404 2.03946 2.27604 2.72529 2.89078 3.19193 3.23334 3.36759 3.47906 3.64795 3.67317 3.84462 4.03253 4.10533 4.15332 4.16612 4.27364 4.30872 4.38422 4.39349 4.47154 4.58642 4.59542 4.72436 4.73668 4.76088 4.78018 4.87476 4.88610 4.95527 5.01421 5.13377 5.19172 5.21274 5.29909 5.40326 5.82993 5.87194 6.03397 6.19237 6.42823 6.59330 7.04108 7.11914 7.55181 8.10491 8.70492 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.022519 B = 0.002341 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.086887 B =11957.284629 C =12821.164515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.524 5.524 3 C 0.055 3.945 4 C 0.443 3.557 5 O -0.610 6.610 6 N -0.576 5.576 7 C -0.331 4.331 8 H 0.081 0.919 9 C -0.016 4.016 10 N -0.923 5.923 11 Si 0.994 3.006 12 H -0.269 1.269 13 H -0.272 1.272 14 H -0.272 1.272 15 C 0.074 3.926 16 H 0.070 0.930 17 C -0.115 4.115 18 C 0.096 3.904 19 N -0.612 5.612 20 C 0.505 3.495 21 O -0.587 6.587 22 C 0.071 3.929 23 H 0.131 0.869 24 C -0.140 4.140 25 C -0.142 4.142 26 C 0.033 3.967 27 O -0.389 6.389 28 C 0.110 3.890 29 H 0.029 0.971 30 H 0.056 0.944 31 H 0.093 0.907 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.394 0.606 35 H 0.277 0.723 36 H 0.114 0.886 37 H 0.082 0.918 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.071 0.929 41 H 0.131 0.869 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.105 0.895 45 H 0.048 0.952 46 H 0.058 0.942 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.579 -23.222 18.941 30.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.249 5.249 3 C -0.076 4.076 4 C 0.231 3.769 5 O -0.496 6.496 6 N -0.214 5.214 7 C -0.461 4.461 8 H 0.099 0.901 9 C -0.215 4.215 10 N -0.564 5.564 11 Si 0.818 3.182 12 H -0.194 1.194 13 H -0.196 1.196 14 H -0.198 1.198 15 C -0.035 4.035 16 H 0.087 0.913 17 C -0.153 4.153 18 C -0.026 4.026 19 N -0.347 5.347 20 C 0.295 3.705 21 O -0.466 6.466 22 C 0.010 3.990 23 H 0.149 0.851 24 C -0.177 4.177 25 C -0.179 4.179 26 C -0.042 4.042 27 O -0.308 6.308 28 C -0.013 4.013 29 H 0.048 0.952 30 H 0.074 0.926 31 H 0.112 0.888 32 H 0.086 0.914 33 H 0.113 0.887 34 H 0.228 0.772 35 H 0.087 0.913 36 H 0.132 0.868 37 H 0.100 0.900 38 H 0.123 0.877 39 H 0.113 0.887 40 H 0.090 0.910 41 H 0.149 0.851 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.123 0.877 45 H 0.066 0.934 46 H 0.077 0.923 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.024 -23.281 17.835 29.345 hybrid contribution 0.188 1.944 -0.016 1.953 sum -0.836 -21.337 17.819 27.812 Atomic orbital electron populations 1.22443 0.85550 1.03071 1.00821 1.61543 1.09551 1.11627 1.42201 1.21755 1.01445 0.90078 0.94371 1.20656 0.83782 0.82179 0.90313 1.90453 1.45071 1.65204 1.48854 1.41961 1.50045 1.11691 1.17678 1.19635 1.34407 0.96372 0.95666 0.90055 1.26082 0.96277 0.96707 1.02477 1.69677 1.38152 1.12701 1.35888 0.84969 0.78740 0.77194 0.77319 1.19393 1.19630 1.19775 1.22797 0.92509 0.96065 0.92128 0.91257 1.22742 0.99221 0.91047 1.02282 1.22547 0.83061 0.94015 1.02944 1.48546 1.12815 1.20999 1.52355 1.21582 0.80497 0.89497 0.78970 1.90706 1.42208 1.51367 1.62338 1.22810 0.84512 0.93557 0.98137 0.85127 1.23239 0.99468 1.03173 0.91832 1.23315 0.92130 1.02408 1.00087 1.23722 1.00267 1.00913 0.79338 1.88505 1.25180 1.94192 1.22909 1.22111 0.95556 0.87810 0.95843 0.95200 0.92564 0.88805 0.91406 0.88686 0.77244 0.91347 0.86799 0.89980 0.87682 0.88650 0.90975 0.85103 0.87890 0.87711 0.87677 0.93399 0.92349 0.92442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 9.05 127.69 1.16 1.97 16 2 N -0.52 -16.10 4.40 -893.44 -3.93 -20.03 16 3 C 0.05 1.96 5.33 85.56 0.46 2.42 16 4 C 0.44 21.46 7.52 87.66 0.66 22.12 16 5 O -0.61 -33.45 13.88 -3.07 -0.04 -33.50 16 6 N -0.58 -30.43 5.29 -306.99 -1.62 -32.05 16 7 C -0.33 -19.13 9.68 84.04 0.81 -18.32 16 8 H 0.08 4.95 7.16 -2.91 -0.02 4.93 16 9 C -0.02 -0.87 5.50 84.93 0.47 -0.41 16 10 N -0.92 -51.28 13.05 21.66 0.28 -51.00 16 11 Si 0.99 43.76 29.55 68.60 2.03 45.79 16 12 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 13 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 14 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 15 C 0.07 1.64 2.71 46.31 0.13 1.77 16 16 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 17 C -0.12 -1.61 5.32 31.78 0.17 -1.45 16 18 C 0.10 1.06 6.21 86.68 0.54 1.60 16 19 N -0.61 -13.23 3.34 -811.13 -2.71 -15.93 16 20 C 0.50 13.33 7.09 87.66 0.62 13.95 16 21 O -0.59 -22.57 16.78 15.76 0.26 -22.30 16 22 C 0.07 1.22 3.38 30.32 0.10 1.32 16 23 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 24 C -0.14 -1.20 5.24 31.91 0.17 -1.04 16 25 C -0.14 -0.98 7.16 32.10 0.23 -0.75 16 26 C 0.03 0.49 7.78 72.65 0.57 1.06 16 27 O -0.39 -9.08 10.56 -130.19 -1.38 -10.46 16 28 C 0.11 2.96 5.35 86.85 0.46 3.43 16 29 H 0.03 0.76 8.13 -2.39 -0.02 0.74 16 30 H 0.06 2.12 5.92 -2.39 -0.01 2.11 16 31 H 0.09 2.02 6.91 -2.39 -0.02 2.00 16 32 H 0.07 2.17 8.11 -2.38 -0.02 2.16 16 33 H 0.10 3.29 6.70 -2.39 -0.02 3.27 16 34 H 0.39 20.05 7.90 -92.71 -0.73 19.32 16 35 H 0.28 14.46 8.31 -92.71 -0.77 13.69 16 36 H 0.11 0.95 7.97 -2.38 -0.02 0.93 16 37 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.11 0.51 6.39 -2.38 -0.02 0.49 16 39 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.07 0.81 7.84 -2.39 -0.02 0.79 16 41 H 0.13 0.17 7.32 -2.39 -0.02 0.15 16 42 H 0.10 0.35 8.14 -2.38 -0.02 0.33 16 43 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 44 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 45 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 47 H 0.06 1.75 7.67 -2.38 -0.02 1.73 16 Total: -1.00 -82.34 375.09 -0.32 -82.66 By element: Atomic # 1 Polarization: 28.89 SS G_CDS: 0.25 Total: 29.13 kcal Atomic # 6 Polarization: 21.15 SS G_CDS: 6.53 Total: 27.69 kcal Atomic # 7 Polarization: -111.04 SS G_CDS: -7.97 Total: -119.01 kcal Atomic # 8 Polarization: -65.10 SS G_CDS: -1.15 Total: -66.26 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -82.34 -0.32 -82.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188766115.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.139 kcal (2) G-P(sol) polarization free energy of solvation -82.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds