Wall clock time and date at job start Fri Apr 10 2020 18:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47131 * 2 1 4 4 C 1.53002 * 109.47241 * 120.00108 * 2 1 3 5 5 C 1.53001 * 109.46730 * 174.99665 * 4 2 1 6 6 C 1.50705 * 109.46961 * 179.97438 * 5 4 2 7 7 O 1.21284 * 119.99584 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00256 * 180.02562 * 6 5 4 9 9 C 1.47015 * 125.64795 * 359.95678 * 8 6 5 10 10 C 1.54371 * 107.29098 * 178.94525 * 9 8 6 11 11 C 1.55162 * 102.91701 * 337.86459 * 10 9 8 12 12 H 1.09005 * 111.00035 * 277.35745 * 11 10 9 13 13 N 1.46902 * 111.00530 * 153.54845 * 11 10 9 14 14 C 1.46902 * 110.99832 * 61.13669 * 13 11 10 15 15 C 1.46897 * 111.00177 * 185.09216 * 13 11 10 16 16 C 1.50694 * 109.46913 * 169.99603 * 15 13 11 17 17 O 1.21292 * 120.00407 * 0.02562 * 16 15 13 18 18 N 1.34779 * 119.99626 * 180.02562 * 16 15 13 19 19 C 1.37103 * 119.99931 * 180.27570 * 18 16 15 20 20 H 1.07997 * 119.99616 * 359.72830 * 19 18 16 21 21 C 1.38953 * 120.00267 * 179.72479 * 19 18 16 22 22 N 1.31412 * 119.99625 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00108 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47207 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46986 * 120.00118 * 23 21 19 26 26 H 1.48495 * 109.47224 * 240.00004 * 23 21 19 27 27 C 1.47428 * 125.64778 * 180.02562 * 8 6 5 28 28 H 1.09002 * 109.46477 * 300.00104 * 1 2 3 29 29 H 1.09002 * 109.47260 * 59.99328 * 1 2 3 30 30 H 1.08994 * 109.47085 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47163 * 240.00189 * 2 1 3 32 32 H 1.09000 * 109.46910 * 300.00204 * 3 2 1 33 33 H 1.08993 * 109.46958 * 60.00579 * 3 2 1 34 34 H 1.09004 * 109.47060 * 180.02562 * 3 2 1 35 35 H 1.08993 * 109.47036 * 55.00163 * 4 2 1 36 36 H 1.08995 * 109.47173 * 294.99506 * 4 2 1 37 37 H 1.09004 * 109.47443 * 60.00486 * 5 4 2 38 38 H 1.08995 * 109.47652 * 299.99644 * 5 4 2 39 39 H 1.08999 * 109.88808 * 298.39737 * 9 8 6 40 40 H 1.09005 * 109.88112 * 59.56212 * 9 8 6 41 41 H 1.09000 * 110.75868 * 219.50037 * 10 9 8 42 42 H 1.08999 * 110.70771 * 96.20109 * 10 9 8 43 43 H 1.09003 * 109.46677 * 189.99463 * 14 13 11 44 44 H 1.08995 * 109.47182 * 309.99165 * 14 13 11 45 45 H 1.08993 * 109.47189 * 69.99911 * 14 13 11 46 46 H 1.08998 * 109.46614 * 49.99976 * 15 13 11 47 47 H 1.08994 * 109.46923 * 290.00044 * 15 13 11 48 48 H 0.96996 * 120.00140 * 0.02562 * 18 16 15 49 49 H 0.96998 * 119.99721 * 179.97438 * 22 21 19 50 50 H 1.08998 * 110.36815 * 85.25105 * 27 8 6 51 51 H 1.08998 * 110.36607 * 322.92898 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.8311 1.1878 6 6 4.0673 -1.5410 2.4185 7 8 3.2830 -1.9211 3.2620 8 7 5.3883 -1.7524 2.5825 9 6 6.4440 -1.3461 1.6436 10 6 7.7942 -1.7721 2.2590 11 6 7.4647 -1.8895 3.7707 12 1 7.5056 -0.9145 4.2563 13 7 8.3648 -2.8428 4.4333 14 6 9.7632 -2.4045 4.3314 15 6 7.9773 -3.0451 5.8357 16 6 8.7574 -4.1990 6.4109 17 8 9.5579 -4.7940 5.7207 18 7 8.5657 -4.5698 7.6924 19 6 9.2795 -5.6160 8.2174 20 1 9.9923 -6.1457 7.6028 21 6 9.0861 -5.9947 9.5403 22 7 8.2192 -5.3497 10.2883 23 14 10.0581 -7.4205 10.2554 24 1 10.9619 -7.9744 9.2154 25 1 10.8642 -6.9419 11.4071 26 1 9.1216 -8.4784 10.7123 27 6 6.0136 -2.4308 3.7324 28 1 -0.3632 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6766 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6055 -1.7198 1.2951 36 1 1.7518 -0.1583 2.1369 37 1 3.9995 0.1675 1.1419 38 1 3.8532 -1.3940 0.3001 39 1 6.2996 -1.8443 0.6849 40 1 6.4238 -0.2646 1.5084 41 1 8.5543 -1.0099 2.0881 42 1 8.1140 -2.7340 1.8582 43 1 10.4205 -3.2057 4.6692 44 1 9.9925 -2.1593 3.2945 45 1 9.9141 -1.5234 4.9551 46 1 6.9110 -3.2645 5.8899 47 1 8.1918 -2.1413 6.4059 48 1 7.9253 -4.0943 8.2443 49 1 8.0839 -5.6143 11.2116 50 1 6.0150 -3.5103 3.5812 51 1 5.4895 -2.1767 4.6537 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188822165.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:37:32 Heat of formation + Delta-G solvation = -79.351010 kcal Electronic energy + Delta-G solvation = -27786.589818 eV Core-core repulsion = 23913.442922 eV Total energy + Delta-G solvation = -3873.146896 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.34605 -38.83478 -37.79464 -36.75739 -35.45459 -33.81491 -31.68466 -31.24390 -30.67905 -28.96785 -27.84687 -27.52654 -25.34202 -24.79619 -23.37615 -22.80275 -20.33834 -20.23152 -19.39083 -19.00303 -17.83163 -17.30998 -16.83419 -16.06434 -15.85910 -15.31904 -15.14486 -14.64896 -14.62747 -14.44180 -14.20260 -13.87421 -13.72419 -13.63807 -13.37229 -13.29466 -12.91836 -12.71017 -12.56602 -12.45165 -12.14539 -12.07656 -11.81120 -11.65332 -11.50865 -11.39200 -11.28637 -11.12899 -11.07827 -10.99552 -10.95051 -10.86515 -10.75940 -10.33048 -10.20998 -9.92107 -9.47779 -8.78011 -8.49113 -7.98017 -7.87904 -6.40113 -3.80944 2.52441 2.77244 3.17442 3.27970 3.34979 3.90409 3.93792 4.14839 4.23730 4.45421 4.45941 4.51004 4.55394 4.76564 4.81197 4.94167 5.05132 5.08448 5.12876 5.17519 5.21771 5.28016 5.29696 5.33853 5.38563 5.48878 5.54861 5.59378 5.63992 5.68499 5.71832 5.73062 5.78942 5.86364 5.87853 5.89430 5.92516 6.01333 6.05679 6.09264 6.15347 6.28884 6.53513 7.18638 7.31563 7.39671 7.56949 8.04884 8.07939 8.63169 9.19655 9.56017 10.07560 10.77690 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.020971 B = 0.002087 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.835619 B =13411.982870 C =14416.513893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.098 4.098 3 C -0.151 4.151 4 C -0.100 4.100 5 C -0.136 4.136 6 C 0.525 3.475 7 O -0.539 6.539 8 N -0.620 5.620 9 C 0.103 3.897 10 C -0.123 4.123 11 C 0.068 3.932 12 H 0.054 0.946 13 N -0.507 5.507 14 C 0.023 3.977 15 C 0.042 3.958 16 C 0.445 3.555 17 O -0.578 6.578 18 N -0.564 5.564 19 C -0.298 4.298 20 H 0.104 0.896 21 C 0.021 3.979 22 N -0.901 5.901 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.112 3.888 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.081 0.919 42 H 0.092 0.908 43 H 0.099 0.901 44 H 0.060 0.940 45 H 0.016 0.984 46 H 0.089 0.911 47 H 0.049 0.951 48 H 0.392 0.608 49 H 0.271 0.729 50 H 0.083 0.917 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.141 15.055 -20.505 27.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 C -0.208 4.208 4 C -0.138 4.138 5 C -0.176 4.176 6 C 0.314 3.686 7 O -0.416 6.416 8 N -0.355 5.355 9 C -0.020 4.020 10 C -0.161 4.161 11 C -0.042 4.042 12 H 0.072 0.928 13 N -0.231 5.231 14 C -0.125 4.125 15 C -0.089 4.089 16 C 0.231 3.769 17 O -0.462 6.462 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.122 0.878 21 C -0.180 4.180 22 N -0.542 5.542 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.011 4.011 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.100 0.900 42 H 0.110 0.890 43 H 0.117 0.883 44 H 0.079 0.921 45 H 0.035 0.965 46 H 0.107 0.893 47 H 0.067 0.933 48 H 0.225 0.775 49 H 0.081 0.919 50 H 0.101 0.899 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.201 13.975 -20.567 26.513 hybrid contribution 0.198 0.435 1.251 1.340 sum -9.002 14.410 -19.316 25.725 Atomic orbital electron populations 1.21826 0.95044 1.01892 1.01725 1.21149 0.95988 0.96312 0.98208 1.21917 1.01024 0.96040 1.01803 1.21427 0.92738 1.01672 0.98005 1.21724 0.98108 1.01496 0.96225 1.20451 0.80270 0.79458 0.88394 1.90729 1.54287 1.51710 1.44862 1.48491 1.05609 1.58549 1.22858 1.22058 0.87091 0.99715 0.93147 1.22718 0.95594 1.03315 0.94514 1.22787 0.92343 0.94234 0.94796 0.92807 1.61633 1.02652 1.44486 1.14332 1.22554 0.89354 1.00118 1.00438 1.21947 1.00650 0.97990 0.88324 1.19669 0.86952 0.87267 0.83055 1.90475 1.38961 1.57187 1.59594 1.41873 1.37913 1.30686 1.09599 1.19745 1.19426 1.08588 0.95000 0.87834 1.25272 0.97399 0.99118 0.96239 1.69624 1.34753 1.41227 1.08639 0.85799 0.79230 0.80470 0.78833 1.19225 1.20811 1.20756 1.22264 0.91556 0.97990 0.89290 0.92582 0.92772 0.92582 0.91201 0.92797 0.92582 0.92560 0.91099 0.91110 0.88893 0.89041 0.91106 0.91431 0.90047 0.88986 0.88297 0.92114 0.96525 0.89315 0.93321 0.77488 0.91925 0.89916 0.90404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.19 37.16 0.34 -0.58 16 2 C -0.10 -0.62 2.92 -90.62 -0.26 -0.89 16 3 C -0.15 -0.85 8.95 37.16 0.33 -0.51 16 4 C -0.10 -0.84 3.97 -26.73 -0.11 -0.95 16 5 C -0.14 -1.08 4.65 -27.88 -0.13 -1.21 16 6 C 0.53 6.46 7.85 -10.98 -0.09 6.37 16 7 O -0.54 -8.92 16.24 5.55 0.09 -8.83 16 8 N -0.62 -7.09 3.33 -170.48 -0.57 -7.66 16 9 C 0.10 0.83 6.49 -3.04 -0.02 0.81 16 10 C -0.12 -1.15 5.30 -24.87 -0.13 -1.28 16 11 C 0.07 0.84 2.71 -65.55 -0.18 0.66 16 12 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 13 N -0.51 -8.08 4.40 -233.74 -1.03 -9.11 16 14 C 0.02 0.35 9.08 60.07 0.55 0.90 16 15 C 0.04 0.75 5.33 -4.98 -0.03 0.73 16 16 C 0.45 10.47 7.54 -10.99 -0.08 10.38 16 17 O -0.58 -15.33 13.88 5.55 0.08 -15.25 16 18 N -0.56 -14.38 5.29 -10.96 -0.06 -14.44 16 19 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 20 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.77 13.05 55.50 0.72 -24.05 16 23 Si 0.93 21.19 29.55 -169.99 -5.02 16.17 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 C 0.11 1.50 5.38 -2.52 -0.01 1.48 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.28 6.57 -51.93 -0.34 -0.06 16 35 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 36 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 37 H 0.09 0.59 6.57 -51.93 -0.34 0.25 16 38 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.61 7.88 -51.93 -0.41 0.20 16 42 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.10 1.87 6.01 -51.93 -0.31 1.55 16 44 H 0.06 0.75 6.72 -51.93 -0.35 0.40 16 45 H 0.02 0.23 8.06 -51.93 -0.42 -0.18 16 46 H 0.09 1.50 6.72 -51.93 -0.35 1.15 16 47 H 0.05 0.80 8.06 -51.93 -0.42 0.39 16 48 H 0.39 9.64 7.90 -40.82 -0.32 9.31 16 49 H 0.27 7.03 8.31 -40.82 -0.34 6.70 16 50 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 51 H 0.08 1.13 7.68 -51.93 -0.40 0.73 16 LS Contribution 403.12 15.07 6.07 6.07 Total: -1.00 -33.01 403.12 -8.85 -41.87 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -9.08 Total: 7.32 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: -0.06 Total: 7.91 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: -0.93 Total: -55.25 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: 0.17 Total: -24.09 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.01 -8.85 -41.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188822165.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.485 kcal (2) G-P(sol) polarization free energy of solvation -33.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds