Wall clock time and date at job start Fri Apr 10 2020 18:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47252 * 2 1 4 4 C 1.52994 * 109.47283 * 299.99904 * 3 2 1 5 5 C 1.52995 * 109.46762 * 60.00220 * 3 2 1 6 6 C 1.50700 * 109.47105 * 180.02562 * 3 2 1 7 7 O 1.21283 * 119.99986 * 7.06779 * 6 3 2 8 8 N 1.34770 * 120.00244 * 187.07000 * 6 3 2 9 9 C 1.46930 * 120.62849 * 354.55620 * 8 6 3 10 10 C 1.52758 * 109.01123 * 233.58391 * 9 8 6 11 11 C 1.53040 * 109.38392 * 305.59167 * 10 9 8 12 12 N 1.46900 * 109.44800 * 181.25276 * 11 10 9 13 13 C 1.46900 * 111.00453 * 84.93635 * 12 11 10 14 14 C 1.50699 * 109.47207 * 179.97438 * 13 12 11 15 15 O 1.21290 * 120.00254 * 0.02562 * 14 13 12 16 16 N 1.34779 * 119.99424 * 179.97438 * 14 13 12 17 17 C 1.37102 * 119.99485 * 180.02562 * 16 14 13 18 18 H 1.07999 * 119.99810 * 0.02562 * 17 16 14 19 19 C 1.38947 * 119.99637 * 180.02562 * 17 16 14 20 20 N 1.31413 * 120.00252 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99784 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47215 * 89.99963 * 21 19 17 23 23 H 1.48501 * 109.47236 * 209.99701 * 21 19 17 24 24 H 1.48498 * 109.47469 * 329.99767 * 21 19 17 25 25 C 1.53034 * 109.53754 * 61.23707 * 11 10 9 26 26 C 1.46930 * 120.63604 * 174.83976 * 8 6 3 27 27 H 1.09004 * 109.47343 * 300.00291 * 1 2 3 28 28 H 1.08999 * 109.47025 * 59.99620 * 1 2 3 29 29 H 1.08996 * 109.47611 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46997 * 119.99927 * 2 1 3 31 31 H 1.09000 * 109.47023 * 240.00095 * 2 1 3 32 32 H 1.09006 * 109.46940 * 74.55073 * 4 3 2 33 33 H 1.08996 * 109.47642 * 194.55724 * 4 3 2 34 34 H 1.09001 * 109.46892 * 314.56027 * 4 3 2 35 35 H 1.08997 * 109.47615 * 52.34554 * 5 3 2 36 36 H 1.09004 * 109.46839 * 172.34910 * 5 3 2 37 37 H 1.09003 * 109.47136 * 292.33852 * 5 3 2 38 38 H 1.08998 * 109.58762 * 353.42197 * 9 8 6 39 39 H 1.09003 * 109.58423 * 113.84505 * 9 8 6 40 40 H 1.09000 * 109.56661 * 185.54697 * 10 9 8 41 41 H 1.09007 * 109.38290 * 65.51894 * 10 9 8 42 42 H 1.08998 * 109.45658 * 301.21423 * 11 10 9 43 43 H 1.00909 * 111.00200 * 320.98128 * 12 11 10 44 44 H 1.09003 * 109.47052 * 300.00066 * 13 12 11 45 45 H 1.08997 * 109.47098 * 59.99836 * 13 12 11 46 46 H 0.96993 * 120.00504 * 0.02562 * 16 14 13 47 47 H 0.97003 * 120.00040 * 180.02562 * 20 19 17 48 48 H 1.09010 * 109.49690 * 178.68286 * 25 11 10 49 49 H 1.08997 * 109.52954 * 58.60633 * 25 11 10 50 50 H 1.08994 * 109.58314 * 246.15644 * 26 8 6 51 51 H 1.08997 * 109.57946 * 6.43361 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5301 2.1638 -1.2492 5 6 1.5300 2.1637 1.2493 6 6 3.5470 1.4425 -0.0006 7 8 4.1533 0.4001 -0.1303 8 7 4.2210 2.6007 0.1429 9 6 3.5054 3.8834 0.1816 10 6 4.1035 4.8188 -0.8675 11 6 5.6131 4.9338 -0.6438 12 7 6.1853 5.8565 -1.6334 13 6 6.0741 7.2495 -1.1805 14 6 6.6707 8.1644 -2.2187 15 8 7.1418 7.7017 -3.2361 16 7 6.6798 9.4970 -2.0171 17 6 7.2222 10.3295 -2.9619 18 1 7.6416 9.9174 -3.8678 19 6 7.2321 11.7032 -2.7539 20 7 6.7212 12.2046 -1.6518 21 14 7.9716 12.8374 -4.0408 22 1 6.9194 13.2418 -5.0076 23 1 8.5245 14.0453 -3.3771 24 1 9.0588 12.1269 -4.7608 25 6 6.2599 3.5554 -0.7982 26 6 5.6858 2.6053 0.2574 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 0.4711 2.3929 -1.1296 33 1 2.0887 3.0894 -1.3879 34 1 1.6669 1.5228 -2.1201 35 1 1.7772 1.5769 2.1339 36 1 2.0008 3.1442 1.3203 37 1 0.4486 2.2839 1.1834 38 1 2.4500 3.7197 -0.0360 39 1 3.6117 4.3314 1.1696 40 1 3.6466 5.8045 -0.7807 41 1 3.9128 4.4159 -1.8623 42 1 5.8035 5.3140 0.3598 43 1 5.7508 5.7339 -2.5359 44 1 5.0236 7.5012 -1.0343 45 1 6.6108 7.3695 -0.2395 46 1 6.3028 9.8671 -1.2037 47 1 6.7278 13.1637 -1.5067 48 1 7.3379 3.6421 -0.6618 49 1 6.0495 3.1636 -1.7933 50 1 5.9734 2.9469 1.2517 51 1 6.0683 1.5981 0.0923 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202260846.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:05 Heat of formation + Delta-G solvation = -70.869303 kcal Electronic energy + Delta-G solvation = -28502.502445 eV Core-core repulsion = 24629.723344 eV Total energy + Delta-G solvation = -3872.779101 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.12251 -38.69885 -37.82121 -36.73178 -35.16737 -33.88344 -32.05168 -31.30940 -30.94853 -30.02031 -27.82462 -26.99365 -25.47955 -24.48523 -23.52239 -23.30123 -21.54871 -20.27707 -19.30310 -18.88697 -17.89380 -16.98391 -16.50384 -16.01102 -15.65301 -15.37180 -15.16462 -14.88570 -14.67740 -14.53799 -14.26595 -13.97715 -13.91851 -13.69914 -13.58381 -13.08839 -12.99533 -12.88100 -12.56382 -12.32991 -12.27650 -12.09905 -11.90835 -11.66233 -11.61104 -11.57986 -11.43175 -11.37761 -11.07907 -10.99410 -10.98863 -10.75188 -10.60016 -10.40722 -10.23329 -9.74634 -9.52769 -8.88757 -8.48088 -8.05623 -7.97389 -6.43602 -3.84391 2.42099 2.74313 3.16470 3.25332 3.31486 3.88661 4.03823 4.07339 4.26226 4.31018 4.45803 4.49145 4.67725 4.76658 4.80203 4.97455 5.02796 5.05995 5.07991 5.12040 5.15026 5.20189 5.22325 5.27092 5.33578 5.39102 5.43494 5.51331 5.53969 5.59258 5.64196 5.67795 5.72922 5.73840 5.78019 5.85974 5.92575 5.96609 6.00302 6.05090 6.15731 6.27116 6.36964 7.17480 7.21360 7.53563 7.63348 7.96870 8.04612 8.59381 9.16191 9.52366 10.03861 10.74092 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.027626 B = 0.002096 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.295189 B =13354.012475 C =13759.354721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.098 4.098 3 C -0.081 4.081 4 C -0.155 4.155 5 C -0.162 4.162 6 C 0.526 3.474 7 O -0.543 6.543 8 N -0.608 5.608 9 C 0.092 3.908 10 C -0.171 4.171 11 C 0.089 3.911 12 N -0.663 5.663 13 C 0.051 3.949 14 C 0.440 3.560 15 O -0.583 6.583 16 N -0.564 5.564 17 C -0.299 4.299 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.930 3.070 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.269 1.269 25 C -0.120 4.120 26 C 0.111 3.889 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.107 0.893 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.350 0.650 44 H 0.043 0.957 45 H 0.085 0.915 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.085 0.915 49 H 0.067 0.933 50 H 0.067 0.933 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.804 -18.837 8.855 24.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.136 4.136 3 C -0.085 4.085 4 C -0.212 4.212 5 C -0.219 4.219 6 C 0.314 3.686 7 O -0.419 6.419 8 N -0.341 5.341 9 C -0.031 4.031 10 C -0.211 4.211 11 C -0.021 4.021 12 N -0.294 5.294 13 C -0.082 4.082 14 C 0.225 3.775 15 O -0.467 6.467 16 N -0.201 5.201 17 C -0.429 4.429 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.543 5.543 21 Si 0.757 3.243 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.194 1.194 25 C -0.159 4.159 26 C -0.012 4.012 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.125 0.875 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.096 0.904 43 H 0.170 0.830 44 H 0.061 0.939 45 H 0.103 0.897 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.103 0.897 49 H 0.085 0.915 50 H 0.085 0.915 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.494 -19.556 8.380 24.673 hybrid contribution -0.819 1.253 -0.168 1.507 sum -13.313 -18.303 8.212 24.076 Atomic orbital electron populations 1.21878 0.95423 1.01821 1.02037 1.21372 0.95469 0.93505 1.03281 1.20775 0.91401 0.98495 0.97783 1.22193 1.01981 1.00798 0.96201 1.22374 1.02151 1.01259 0.96114 1.20600 0.89760 0.83021 0.75242 1.90674 1.70266 1.31524 1.49476 1.48082 1.07391 1.06134 1.72529 1.22221 0.97802 0.83578 0.99526 1.22709 0.98482 0.99996 0.99905 1.21575 0.90456 0.93302 0.96810 1.60173 1.61054 1.02946 1.05195 1.21704 0.99015 0.88666 0.98787 1.19829 0.85737 0.83097 0.88806 1.90528 1.50906 1.75545 1.29739 1.41867 1.53127 1.04442 1.20627 1.19704 1.35083 0.87301 1.00775 0.87932 1.25264 0.97631 0.97516 0.97573 1.69611 1.45631 1.13712 1.25390 0.85855 0.79261 0.79173 0.79989 1.20427 1.20915 1.19397 1.21877 1.01136 0.93641 0.99251 1.21669 0.78931 1.01617 0.98981 0.92434 0.92396 0.92604 0.91541 0.91170 0.91020 0.91055 0.91751 0.92069 0.90552 0.91098 0.87502 0.91113 0.90369 0.91081 0.90359 0.83031 0.93926 0.89656 0.77482 0.91877 0.89695 0.91459 0.91463 0.88892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.24 37.15 0.34 -0.58 16 2 C -0.10 -0.80 4.25 -26.73 -0.11 -0.92 16 3 C -0.08 -0.65 0.52 -155.66 -0.08 -0.73 16 4 C -0.15 -1.07 7.28 37.15 0.27 -0.80 16 5 C -0.16 -1.00 7.49 37.15 0.28 -0.72 16 6 C 0.53 5.84 6.47 -10.99 -0.07 5.76 16 7 O -0.54 -8.01 15.40 5.55 0.09 -7.92 16 8 N -0.61 -5.92 2.97 -173.03 -0.51 -6.43 16 9 C 0.09 0.70 3.74 -3.93 -0.01 0.69 16 10 C -0.17 -1.58 5.15 -26.83 -0.14 -1.72 16 11 C 0.09 1.01 2.43 -67.67 -0.16 0.85 16 12 N -0.66 -10.20 5.87 -107.95 -0.63 -10.84 16 13 C 0.05 0.86 5.96 -4.98 -0.03 0.83 16 14 C 0.44 10.22 7.82 -10.98 -0.09 10.14 16 15 O -0.58 -15.76 15.78 5.55 0.09 -15.68 16 16 N -0.56 -14.11 5.29 -10.96 -0.06 -14.17 16 17 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 18 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 19 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 20 N -0.90 -24.30 13.05 55.50 0.72 -23.58 16 21 Si 0.93 20.94 29.55 -169.99 -5.02 15.92 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 25 C -0.12 -1.33 5.69 -26.62 -0.15 -1.48 16 26 C 0.11 1.12 6.44 -3.71 -0.02 1.10 16 27 H 0.06 0.30 6.61 -51.93 -0.34 -0.04 16 28 H 0.06 0.32 6.78 -51.93 -0.35 -0.03 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.67 8.02 -51.93 -0.42 0.25 16 32 H 0.07 0.38 7.10 -51.93 -0.37 0.01 16 33 H 0.07 0.50 4.88 -51.93 -0.25 0.25 16 34 H 0.06 0.49 8.06 -51.93 -0.42 0.07 16 35 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 36 H 0.08 0.43 4.31 -51.93 -0.22 0.21 16 37 H 0.07 0.34 6.74 -51.93 -0.35 -0.01 16 38 H 0.11 0.68 2.92 -51.93 -0.15 0.52 16 39 H 0.07 0.48 7.94 -51.93 -0.41 0.07 16 40 H 0.08 0.71 7.42 -51.93 -0.39 0.32 16 41 H 0.07 0.71 7.91 -51.92 -0.41 0.29 16 42 H 0.08 0.85 7.80 -51.93 -0.40 0.45 16 43 H 0.35 5.68 8.18 -39.29 -0.32 5.36 16 44 H 0.04 0.63 7.41 -51.93 -0.38 0.25 16 45 H 0.09 1.33 8.05 -51.93 -0.42 0.92 16 46 H 0.39 9.33 7.90 -40.82 -0.32 9.00 16 47 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 48 H 0.08 0.98 8.14 -51.92 -0.42 0.55 16 49 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 50 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 51 H 0.09 1.06 7.00 -51.93 -0.36 0.70 16 LS Contribution 386.24 15.07 5.82 5.82 Total: -1.00 -32.69 386.24 -8.08 -40.77 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -8.35 Total: 11.65 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: -0.22 Total: 4.45 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: -0.48 Total: -55.01 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: 0.17 Total: -23.60 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.69 -8.08 -40.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202260846.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.101 kcal (2) G-P(sol) polarization free energy of solvation -32.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds