Wall clock time and date at job start Fri Apr 10 2020 18:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47252 * 2 1 4 4 C 1.52994 * 109.47283 * 299.99904 * 3 2 1 5 5 C 1.52995 * 109.46762 * 60.00220 * 3 2 1 6 6 C 1.50700 * 109.47105 * 180.02562 * 3 2 1 7 7 O 1.21283 * 119.99986 * 7.06779 * 6 3 2 8 8 N 1.34770 * 120.00244 * 187.07000 * 6 3 2 9 9 C 1.46930 * 120.62849 * 354.55620 * 8 6 3 10 10 C 1.52758 * 109.01123 * 233.58391 * 9 8 6 11 11 C 1.53040 * 109.38392 * 305.59167 * 10 9 8 12 12 N 1.46900 * 109.44800 * 181.25276 * 11 10 9 13 13 C 1.46900 * 111.00453 * 84.93635 * 12 11 10 14 14 C 1.50699 * 109.47207 * 179.97438 * 13 12 11 15 15 O 1.21290 * 120.00254 * 0.02562 * 14 13 12 16 16 N 1.34779 * 119.99424 * 179.97438 * 14 13 12 17 17 C 1.37102 * 119.99485 * 180.02562 * 16 14 13 18 18 H 1.07999 * 119.99810 * 0.02562 * 17 16 14 19 19 C 1.38947 * 119.99637 * 180.02562 * 17 16 14 20 20 N 1.31413 * 120.00252 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99784 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47215 * 89.99963 * 21 19 17 23 23 H 1.48501 * 109.47236 * 209.99701 * 21 19 17 24 24 H 1.48498 * 109.47469 * 329.99767 * 21 19 17 25 25 C 1.53034 * 109.53754 * 61.23707 * 11 10 9 26 26 C 1.46930 * 120.63604 * 174.83976 * 8 6 3 27 27 H 1.09004 * 109.47343 * 300.00291 * 1 2 3 28 28 H 1.08999 * 109.47025 * 59.99620 * 1 2 3 29 29 H 1.08996 * 109.47611 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46997 * 119.99927 * 2 1 3 31 31 H 1.09000 * 109.47023 * 240.00095 * 2 1 3 32 32 H 1.09006 * 109.46940 * 74.55073 * 4 3 2 33 33 H 1.08996 * 109.47642 * 194.55724 * 4 3 2 34 34 H 1.09001 * 109.46892 * 314.56027 * 4 3 2 35 35 H 1.08997 * 109.47615 * 52.34554 * 5 3 2 36 36 H 1.09004 * 109.46839 * 172.34910 * 5 3 2 37 37 H 1.09003 * 109.47136 * 292.33852 * 5 3 2 38 38 H 1.08998 * 109.58762 * 353.42197 * 9 8 6 39 39 H 1.09003 * 109.58423 * 113.84505 * 9 8 6 40 40 H 1.09000 * 109.56661 * 185.54697 * 10 9 8 41 41 H 1.09007 * 109.38290 * 65.51894 * 10 9 8 42 42 H 1.08998 * 109.45658 * 301.21423 * 11 10 9 43 43 H 1.00909 * 111.00200 * 320.98128 * 12 11 10 44 44 H 1.09003 * 109.47052 * 300.00066 * 13 12 11 45 45 H 1.08997 * 109.47098 * 59.99836 * 13 12 11 46 46 H 0.96993 * 120.00504 * 0.02562 * 16 14 13 47 47 H 0.97003 * 120.00040 * 180.02562 * 20 19 17 48 48 H 1.09010 * 109.49690 * 178.68286 * 25 11 10 49 49 H 1.08997 * 109.52954 * 58.60633 * 25 11 10 50 50 H 1.08994 * 109.58314 * 246.15644 * 26 8 6 51 51 H 1.08997 * 109.57946 * 6.43361 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5301 2.1638 -1.2492 5 6 1.5300 2.1637 1.2493 6 6 3.5470 1.4425 -0.0006 7 8 4.1533 0.4001 -0.1303 8 7 4.2210 2.6007 0.1429 9 6 3.5054 3.8834 0.1816 10 6 4.1035 4.8188 -0.8675 11 6 5.6131 4.9338 -0.6438 12 7 6.1853 5.8565 -1.6334 13 6 6.0741 7.2495 -1.1805 14 6 6.6707 8.1644 -2.2187 15 8 7.1418 7.7017 -3.2361 16 7 6.6798 9.4970 -2.0171 17 6 7.2222 10.3295 -2.9619 18 1 7.6416 9.9174 -3.8678 19 6 7.2321 11.7032 -2.7539 20 7 6.7212 12.2046 -1.6518 21 14 7.9716 12.8374 -4.0408 22 1 6.9194 13.2418 -5.0076 23 1 8.5245 14.0453 -3.3771 24 1 9.0588 12.1269 -4.7608 25 6 6.2599 3.5554 -0.7982 26 6 5.6858 2.6053 0.2574 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 0.4711 2.3929 -1.1296 33 1 2.0887 3.0894 -1.3879 34 1 1.6669 1.5228 -2.1201 35 1 1.7772 1.5769 2.1339 36 1 2.0008 3.1442 1.3203 37 1 0.4486 2.2839 1.1834 38 1 2.4500 3.7197 -0.0360 39 1 3.6117 4.3314 1.1696 40 1 3.6466 5.8045 -0.7807 41 1 3.9128 4.4159 -1.8623 42 1 5.8035 5.3140 0.3598 43 1 5.7508 5.7339 -2.5359 44 1 5.0236 7.5012 -1.0343 45 1 6.6108 7.3695 -0.2395 46 1 6.3028 9.8671 -1.2037 47 1 6.7278 13.1637 -1.5067 48 1 7.3379 3.6421 -0.6618 49 1 6.0495 3.1636 -1.7933 50 1 5.9734 2.9469 1.2517 51 1 6.0683 1.5981 0.0923 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202260846.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:04 Heat of formation + Delta-G solvation = -94.065458 kcal Electronic energy + Delta-G solvation = -28503.508306 eV Core-core repulsion = 24629.723344 eV Total energy + Delta-G solvation = -3873.784962 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 325.215 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.90522 -40.22596 -39.04248 -37.48250 -36.36515 -35.76108 -33.30046 -32.84626 -31.97346 -30.66280 -28.40958 -28.31129 -26.60525 -25.69005 -24.42174 -24.25231 -22.39224 -21.31152 -20.79899 -19.92186 -19.66327 -17.96895 -17.52151 -17.22221 -16.80726 -16.42928 -16.29088 -16.15491 -15.71434 -15.65743 -15.33793 -15.29554 -15.03536 -14.70609 -14.55642 -13.96758 -13.85691 -13.73283 -13.50081 -13.48878 -13.41076 -13.13913 -12.92878 -12.85147 -12.73651 -12.59083 -12.41642 -12.21819 -12.16576 -12.12319 -12.11601 -11.83587 -11.58443 -11.56836 -11.50337 -11.32216 -10.56871 -10.33705 -10.00747 -9.71756 -9.23695 -8.46361 -5.94766 1.38080 1.42236 1.54625 1.58679 1.98215 2.06457 2.29485 2.91243 3.21092 3.38486 3.50897 3.69973 3.74112 3.88359 3.91938 4.02717 4.11605 4.24115 4.31647 4.34289 4.44423 4.46204 4.47285 4.53910 4.59136 4.63088 4.64725 4.69060 4.73084 4.76880 4.86878 4.92337 4.93348 5.02324 5.07863 5.13127 5.14641 5.18190 5.24009 5.26296 5.40924 5.41648 5.48925 5.57787 5.92500 6.14954 6.37775 6.41909 6.61237 7.13576 7.13892 7.57493 8.13267 8.70839 Molecular weight = 325.22amu Principal moments of inertia in cm(-1) A = 0.027626 B = 0.002096 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.295189 B =13354.012475 C =13759.354721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 C -0.078 4.078 4 C -0.153 4.153 5 C -0.159 4.159 6 C 0.517 3.483 7 O -0.590 6.590 8 N -0.606 5.606 9 C 0.092 3.908 10 C -0.165 4.165 11 C 0.092 3.908 12 N -0.680 5.680 13 C 0.068 3.932 14 C 0.436 3.564 15 O -0.627 6.627 16 N -0.573 5.573 17 C -0.334 4.334 18 H 0.077 0.923 19 C -0.012 4.012 20 N -0.919 5.919 21 Si 0.991 3.009 22 H -0.270 1.270 23 H -0.270 1.270 24 H -0.275 1.275 25 C -0.113 4.113 26 C 0.114 3.886 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.126 0.874 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.061 0.939 42 H 0.093 0.907 43 H 0.342 0.658 44 H 0.073 0.927 45 H 0.104 0.896 46 H 0.397 0.603 47 H 0.278 0.722 48 H 0.077 0.923 49 H 0.048 0.952 50 H 0.086 0.914 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.761 -17.729 10.279 25.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.136 4.136 3 C -0.081 4.081 4 C -0.210 4.210 5 C -0.216 4.216 6 C 0.306 3.694 7 O -0.470 6.470 8 N -0.338 5.338 9 C -0.030 4.030 10 C -0.204 4.204 11 C -0.018 4.018 12 N -0.311 5.311 13 C -0.065 4.065 14 C 0.223 3.777 15 O -0.513 6.513 16 N -0.210 5.210 17 C -0.463 4.463 18 H 0.095 0.905 19 C -0.212 4.212 20 N -0.559 5.559 21 Si 0.815 3.185 22 H -0.196 1.196 23 H -0.195 1.195 24 H -0.200 1.200 25 C -0.152 4.152 26 C -0.009 4.009 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.114 0.886 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.143 0.857 39 H 0.111 0.889 40 H 0.108 0.892 41 H 0.080 0.920 42 H 0.111 0.889 43 H 0.161 0.839 44 H 0.090 0.910 45 H 0.122 0.878 46 H 0.231 0.769 47 H 0.087 0.913 48 H 0.096 0.904 49 H 0.067 0.933 50 H 0.105 0.895 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.478 -18.426 9.843 25.417 hybrid contribution -0.168 0.840 -0.617 1.055 sum -14.646 -17.587 9.225 24.676 Atomic orbital electron populations 1.21848 0.93307 1.02359 1.03051 1.21344 0.97218 0.93504 1.01535 1.20810 0.89015 0.98770 0.99485 1.22208 1.03442 1.00287 0.95050 1.22388 1.03497 1.01152 0.94551 1.21280 0.91190 0.82608 0.74273 1.90650 1.71426 1.33246 1.51675 1.48182 1.07229 1.06759 1.71628 1.22425 0.98365 0.82072 1.00128 1.22627 0.96799 1.00990 1.00008 1.21632 0.91796 0.92085 0.96263 1.60143 1.62381 1.02761 1.05830 1.21557 1.00245 0.87911 0.96747 1.20987 0.84238 0.83097 0.89333 1.90498 1.52503 1.76266 1.32051 1.41927 1.53530 1.05098 1.20446 1.19639 1.37037 0.88524 1.01132 0.90529 1.26009 0.97526 0.98235 0.99464 1.69662 1.45640 1.14370 1.26273 0.84953 0.78417 0.77368 0.77756 1.19560 1.19522 1.20015 1.21778 1.00851 0.93931 0.98620 1.21585 0.79456 1.00338 0.99488 0.91060 0.91573 0.92457 0.92953 0.93388 0.88599 0.90936 0.92998 0.92594 0.89621 0.88984 0.85661 0.88914 0.89182 0.92029 0.88919 0.83884 0.90958 0.87779 0.76865 0.91286 0.90414 0.93278 0.89540 0.90738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.24 71.98 0.67 -0.82 16 2 C -0.10 -1.57 4.25 30.59 0.13 -1.44 16 3 C -0.08 -1.13 0.52 -52.93 -0.03 -1.16 16 4 C -0.15 -1.81 7.28 71.98 0.52 -1.28 16 5 C -0.16 -1.48 7.49 71.98 0.54 -0.94 16 6 C 0.52 11.31 6.47 87.66 0.57 11.88 16 7 O -0.59 -18.15 15.40 -3.04 -0.05 -18.19 16 8 N -0.61 -10.99 2.97 -819.75 -2.43 -13.42 16 9 C 0.09 1.13 3.74 86.22 0.32 1.45 16 10 C -0.16 -2.62 5.15 30.53 0.16 -2.46 16 11 C 0.09 1.90 2.43 44.94 0.11 2.01 16 12 N -0.68 -20.19 5.87 -495.45 -2.91 -23.10 16 13 C 0.07 2.14 5.96 85.56 0.51 2.65 16 14 C 0.44 20.25 7.82 87.66 0.69 20.94 16 15 O -0.63 -34.62 15.78 -3.06 -0.05 -34.67 16 16 N -0.57 -28.77 5.29 -306.98 -1.62 -30.39 16 17 C -0.33 -18.79 9.68 84.04 0.81 -17.98 16 18 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 19 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 20 N -0.92 -48.70 13.05 21.66 0.28 -48.42 16 21 Si 0.99 42.58 29.55 68.60 2.03 44.61 16 22 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 23 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 24 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 25 C -0.11 -2.45 5.69 30.67 0.17 -2.27 16 26 C 0.11 2.24 6.44 86.36 0.56 2.80 16 27 H 0.07 0.53 6.61 -2.38 -0.02 0.52 16 28 H 0.07 0.56 6.78 -2.39 -0.02 0.55 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.05 0.96 8.02 -2.39 -0.02 0.94 16 32 H 0.10 0.68 7.10 -2.38 -0.02 0.67 16 33 H 0.07 0.84 4.88 -2.39 -0.01 0.83 16 34 H 0.05 0.75 8.06 -2.39 -0.02 0.73 16 35 H 0.05 0.61 8.13 -2.39 -0.02 0.59 16 36 H 0.09 0.63 4.31 -2.38 -0.01 0.62 16 37 H 0.09 0.50 6.74 -2.39 -0.02 0.49 16 38 H 0.13 1.12 2.92 -2.39 -0.01 1.12 16 39 H 0.09 0.83 7.94 -2.39 -0.02 0.81 16 40 H 0.09 1.28 7.42 -2.39 -0.02 1.27 16 41 H 0.06 1.12 7.91 -2.38 -0.02 1.10 16 42 H 0.09 1.70 7.80 -2.39 -0.02 1.68 16 43 H 0.34 11.02 8.18 -89.69 -0.73 10.29 16 44 H 0.07 1.90 7.41 -2.39 -0.02 1.88 16 45 H 0.10 2.96 8.05 -2.39 -0.02 2.94 16 46 H 0.40 18.74 7.90 -92.71 -0.73 18.00 16 47 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 48 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 49 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 50 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 51 H 0.07 1.77 7.00 -2.39 -0.02 1.75 16 Total: -1.00 -73.20 386.24 0.93 -72.27 By element: Atomic # 1 Polarization: 38.66 SS G_CDS: -0.51 Total: 38.15 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: 6.19 Total: 13.17 kcal Atomic # 7 Polarization: -108.65 SS G_CDS: -6.68 Total: -115.33 kcal Atomic # 8 Polarization: -52.77 SS G_CDS: -0.10 Total: -52.86 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -73.20 0.93 -72.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202260846.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.795 kcal (2) G-P(sol) polarization free energy of solvation -73.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds