Wall clock time and date at job start Fri Apr 10 2020 18:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42896 * 114.00051 * 2 1 4 4 C 1.50698 * 109.47329 * 179.97438 * 3 2 1 5 5 O 1.21288 * 120.00104 * 359.97438 * 4 3 2 6 6 N 1.34782 * 120.00264 * 180.02562 * 4 3 2 7 7 C 1.46497 * 119.99812 * 180.02562 * 6 4 3 8 8 H 1.09000 * 112.88883 * 336.33948 * 7 6 4 9 9 C 1.54143 * 113.66325 * 107.77803 * 7 6 4 10 10 C 1.53944 * 87.22982 * 89.82443 * 9 7 6 11 11 H 1.09000 * 113.66548 * 270.13533 * 10 9 7 12 12 N 1.46906 * 113.66224 * 139.17172 * 10 9 7 13 13 C 1.46902 * 110.99573 * 106.01423 * 12 10 9 14 14 C 1.50707 * 109.46656 * 179.97438 * 13 12 10 15 15 O 1.21294 * 120.00016 * 0.02562 * 14 13 12 16 16 N 1.34783 * 119.99715 * 179.97438 * 14 13 12 17 17 C 1.37092 * 119.99635 * 180.02562 * 16 14 13 18 18 H 1.08003 * 120.00232 * 359.97438 * 17 16 14 19 19 C 1.38952 * 119.99714 * 180.02562 * 17 16 14 20 20 N 1.31413 * 120.00244 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99808 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47214 * 60.00036 * 21 19 17 23 23 H 1.48505 * 109.47086 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47258 * 299.99728 * 21 19 17 25 25 C 1.52910 * 86.88477 * 24.65464 * 10 9 7 26 26 C 1.52908 * 121.13575 * 209.42926 * 25 10 9 27 27 C 1.53953 * 86.77857 * 209.38323 * 26 25 10 28 28 C 1.52910 * 121.13672 * 100.86446 * 25 10 9 29 29 H 1.09000 * 109.46991 * 60.00084 * 1 2 3 30 30 H 1.09000 * 109.47341 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47269 * 300.00179 * 1 2 3 32 32 H 1.08998 * 109.47552 * 59.99633 * 3 2 1 33 33 H 1.09004 * 109.47502 * 300.00012 * 3 2 1 34 34 H 0.96993 * 119.99505 * 0.02562 * 6 4 3 35 35 H 1.09000 * 113.63776 * 335.23995 * 9 7 6 36 36 H 1.09004 * 113.58173 * 204.39787 * 9 7 6 37 37 H 1.00896 * 111.00309 * 342.05835 * 12 10 9 38 38 H 1.08990 * 109.47358 * 299.99539 * 13 12 10 39 39 H 1.09004 * 109.47457 * 60.00221 * 13 12 10 40 40 H 0.96993 * 119.99587 * 0.02562 * 16 14 13 41 41 H 0.96997 * 119.99955 * 180.02562 * 20 19 17 42 42 H 1.08995 * 113.66324 * 323.84886 * 26 25 10 43 43 H 1.09001 * 113.66466 * 94.91485 * 26 25 10 44 44 H 1.09001 * 113.58025 * 270.12308 * 27 26 25 45 45 H 1.09001 * 113.57693 * 139.34061 * 27 26 25 46 46 H 1.08996 * 113.66826 * 265.09278 * 28 25 10 47 47 H 1.09003 * 113.66077 * 36.05986 * 28 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 8 4.0341 0.0915 0.0015 6 7 4.2765 2.2968 0.0013 7 6 5.7369 2.1811 0.0013 8 1 6.0868 1.2305 0.4038 9 6 6.3878 2.5626 -1.3428 10 6 6.4677 4.0045 -0.8095 11 1 5.5874 4.6051 -1.0384 12 7 7.7262 4.6865 -1.1400 13 6 7.5218 5.6847 -2.1982 14 6 8.8315 6.3624 -2.5092 15 8 9.8364 6.0446 -1.9087 16 7 8.8864 7.3208 -3.4552 17 6 10.0779 7.9369 -3.7385 18 1 10.9725 7.6546 -3.2033 19 6 10.1343 8.9254 -4.7134 20 7 9.0458 9.2693 -5.3643 21 14 11.7577 9.7653 -5.0989 22 1 12.7425 8.7527 -5.5572 23 1 11.5513 10.7741 -6.1690 24 1 12.2700 10.4366 -3.8774 25 6 6.4488 3.3978 0.5939 26 6 5.8553 4.1621 1.7778 27 6 6.8585 3.3989 2.6617 28 6 7.7352 3.2432 1.4059 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.8593 3.1725 0.0017 35 1 5.7217 2.4505 -2.1984 36 1 7.3627 2.1017 -1.5016 37 1 8.4393 4.0225 -1.4022 38 1 7.1454 5.1921 -3.0946 39 1 6.7993 6.4283 -1.8616 40 1 8.0828 7.5746 -3.9356 41 1 9.0853 9.9590 -6.0451 42 1 6.0353 5.2364 1.7394 43 1 4.8141 3.9126 1.9821 44 1 6.4721 2.4540 3.0437 45 1 7.3132 4.0152 3.4373 46 1 8.1957 2.2596 1.3131 47 1 8.4442 4.0585 1.2618 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202300974.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:11 Heat of formation + Delta-G solvation = -66.811193 kcal Electronic energy + Delta-G solvation = -27544.853103 eV Core-core repulsion = 23536.416880 eV Total energy + Delta-G solvation = -4008.436223 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.22780 -39.54346 -38.17881 -37.69612 -35.67372 -34.59827 -33.83090 -32.17801 -31.19505 -29.26342 -26.97147 -26.20910 -25.84025 -24.71918 -24.34079 -22.89896 -21.36932 -20.56777 -19.33664 -18.59978 -17.90431 -17.59098 -16.80423 -16.68767 -16.29792 -15.90808 -15.50373 -15.40990 -14.98374 -14.82941 -14.55221 -14.41949 -14.14264 -13.78614 -13.38969 -13.20832 -13.02075 -12.84414 -12.48022 -12.33056 -12.20476 -11.94170 -11.91570 -11.79331 -11.59194 -11.45741 -11.08695 -11.01646 -10.47474 -10.44842 -10.25828 -10.23093 -10.18415 -10.08788 -10.03003 -9.50828 -9.23688 -8.43855 -8.01133 -7.94980 -6.42653 -3.83434 2.29601 2.42986 3.19456 3.25122 3.29588 3.63408 3.90163 4.07652 4.22370 4.27362 4.35755 4.44805 4.59101 4.63201 4.70041 4.73672 4.84661 4.85252 4.87633 4.92428 5.16179 5.23386 5.26293 5.33023 5.38801 5.45840 5.59810 5.71661 5.76344 5.79538 5.81572 5.88992 5.90533 5.97455 6.06201 6.23884 6.32022 6.35823 6.50519 6.54228 7.18751 7.25915 7.54123 7.66414 7.92603 8.05310 8.60361 9.16956 9.53438 10.04916 10.75004 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.019459 B = 0.002213 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.544795 B =12651.009871 C =13576.024289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.043 3.957 4 C 0.515 3.485 5 O -0.518 6.518 6 N -0.708 5.708 7 C 0.148 3.852 8 H 0.104 0.896 9 C -0.179 4.179 10 C 0.082 3.918 11 H 0.094 0.906 12 N -0.652 5.652 13 C 0.050 3.950 14 C 0.440 3.560 15 O -0.583 6.583 16 N -0.564 5.564 17 C -0.299 4.299 18 H 0.102 0.898 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.931 3.069 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.273 1.273 25 C -0.102 4.102 26 C -0.121 4.121 27 C -0.142 4.142 28 C -0.100 4.100 29 H 0.044 0.956 30 H 0.091 0.909 31 H 0.044 0.956 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.402 0.598 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.353 0.647 38 H 0.043 0.957 39 H 0.084 0.916 40 H 0.392 0.608 41 H 0.272 0.728 42 H 0.088 0.912 43 H 0.061 0.939 44 H 0.073 0.927 45 H 0.066 0.934 46 H 0.063 0.937 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.732 -12.240 11.213 24.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.037 4.037 4 C 0.301 3.699 5 O -0.392 6.392 6 N -0.360 5.360 7 C 0.042 3.958 8 H 0.122 0.878 9 C -0.220 4.220 10 C -0.029 4.029 11 H 0.112 0.888 12 N -0.282 5.282 13 C -0.082 4.082 14 C 0.226 3.774 15 O -0.467 6.467 16 N -0.201 5.201 17 C -0.429 4.429 18 H 0.120 0.880 19 C -0.180 4.180 20 N -0.544 5.544 21 Si 0.758 3.242 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.104 4.104 26 C -0.159 4.159 27 C -0.179 4.179 28 C -0.138 4.138 29 H 0.063 0.937 30 H 0.110 0.890 31 H 0.063 0.937 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.236 0.764 35 H 0.089 0.911 36 H 0.112 0.888 37 H 0.173 0.827 38 H 0.061 0.939 39 H 0.102 0.898 40 H 0.225 0.775 41 H 0.082 0.918 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.092 0.908 45 H 0.085 0.915 46 H 0.082 0.918 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -16.638 -12.822 11.954 24.169 hybrid contribution -0.404 0.851 -1.468 1.745 sum -17.041 -11.971 10.486 23.317 Atomic orbital electron populations 1.22852 0.80230 1.03423 1.00201 1.88021 1.19894 1.25106 1.95435 1.22238 0.91575 0.87143 1.02774 1.20250 0.88614 0.84602 0.76483 1.90747 1.74528 1.26452 1.47441 1.45474 1.06261 1.08636 1.75645 1.21487 0.78595 0.99035 0.96692 0.87768 1.24220 1.01801 0.98586 0.97363 1.22887 0.93363 0.91834 0.94832 0.88754 1.59924 1.06926 1.18287 1.43110 1.21705 0.97639 0.95570 0.93298 1.19837 0.89858 0.84043 0.83693 1.90523 1.36381 1.66600 1.53230 1.41861 1.11415 1.33279 1.33499 1.19653 0.88525 1.16139 1.18589 0.87976 1.25263 0.98826 0.97475 0.96404 1.69602 1.27813 1.31856 1.25110 0.85916 0.81395 0.78808 0.78088 1.19921 1.20992 1.19885 1.23030 0.98508 0.95071 0.93795 1.22640 0.98125 0.99873 0.95261 1.22833 0.97951 1.00186 0.96957 1.22497 0.95025 1.02829 0.93465 0.93706 0.89016 0.93740 0.90130 0.90078 0.76393 0.91103 0.88786 0.82668 0.93921 0.89765 0.77501 0.91835 0.89326 0.92055 0.90820 0.91500 0.91827 0.87627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.37 -3.67 10.24 -55.14 -0.56 -4.23 16 3 C 0.04 0.31 6.42 36.00 0.23 0.54 16 4 C 0.52 5.44 7.91 -10.98 -0.09 5.35 16 5 O -0.52 -8.00 16.10 -14.36 -0.23 -8.23 16 6 N -0.71 -5.96 4.81 -53.27 -0.26 -6.22 16 7 C 0.15 1.50 4.13 -67.38 -0.28 1.22 16 8 H 0.10 1.25 7.46 -51.93 -0.39 0.86 16 9 C -0.18 -1.92 7.53 -25.65 -0.19 -2.12 16 10 C 0.08 0.92 3.96 -67.26 -0.27 0.65 16 11 H 0.09 0.96 7.88 -51.93 -0.41 0.55 16 12 N -0.65 -9.76 5.44 -107.51 -0.58 -10.34 16 13 C 0.05 0.85 6.02 -4.97 -0.03 0.82 16 14 C 0.44 10.17 7.82 -10.98 -0.09 10.08 16 15 O -0.58 -15.54 15.78 5.55 0.09 -15.46 16 16 N -0.56 -14.11 5.29 -10.96 -0.06 -14.17 16 17 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 18 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 19 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 20 N -0.90 -24.39 13.05 55.50 0.72 -23.66 16 21 Si 0.93 20.98 29.55 -169.99 -5.02 15.96 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 25 C -0.10 -1.03 0.92 -154.71 -0.14 -1.17 16 26 C -0.12 -1.12 7.62 -26.28 -0.20 -1.32 16 27 C -0.14 -1.36 8.08 -25.75 -0.21 -1.57 16 28 C -0.10 -1.10 7.44 -26.29 -0.20 -1.30 16 29 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.40 2.33 8.42 -40.82 -0.34 1.99 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.09 1.05 7.82 -51.93 -0.41 0.64 16 37 H 0.35 5.62 7.91 -39.29 -0.31 5.31 16 38 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.08 1.30 8.13 -51.93 -0.42 0.88 16 40 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 41 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 42 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.06 0.48 7.58 -51.93 -0.39 0.09 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 47 H 0.11 1.39 7.76 -51.93 -0.40 0.98 16 LS Contribution 391.48 15.07 5.90 5.90 Total: -1.00 -34.31 391.48 -8.15 -42.46 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: -7.56 Total: 13.49 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -0.58 Total: 4.51 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: -0.17 Total: -54.40 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.71 Total: -27.92 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.31 -8.15 -42.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202300974.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.354 kcal (2) G-P(sol) polarization free energy of solvation -34.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds