Wall clock time and date at job start Fri Apr 10 2020 18:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42896 * 114.00051 * 2 1 4 4 C 1.50698 * 109.47329 * 179.97438 * 3 2 1 5 5 O 1.21288 * 120.00104 * 359.97438 * 4 3 2 6 6 N 1.34782 * 120.00264 * 180.02562 * 4 3 2 7 7 C 1.46497 * 119.99812 * 180.02562 * 6 4 3 8 8 H 1.09000 * 112.88883 * 336.33948 * 7 6 4 9 9 C 1.54143 * 113.66325 * 107.77803 * 7 6 4 10 10 C 1.53944 * 87.22982 * 89.82443 * 9 7 6 11 11 H 1.09000 * 113.66548 * 270.13533 * 10 9 7 12 12 N 1.46906 * 113.66224 * 139.17172 * 10 9 7 13 13 C 1.46902 * 110.99573 * 106.01423 * 12 10 9 14 14 C 1.50707 * 109.46656 * 179.97438 * 13 12 10 15 15 O 1.21294 * 120.00016 * 0.02562 * 14 13 12 16 16 N 1.34783 * 119.99715 * 179.97438 * 14 13 12 17 17 C 1.37092 * 119.99635 * 180.02562 * 16 14 13 18 18 H 1.08003 * 120.00232 * 359.97438 * 17 16 14 19 19 C 1.38952 * 119.99714 * 180.02562 * 17 16 14 20 20 N 1.31413 * 120.00244 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99808 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47214 * 60.00036 * 21 19 17 23 23 H 1.48505 * 109.47086 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47258 * 299.99728 * 21 19 17 25 25 C 1.52910 * 86.88477 * 24.65464 * 10 9 7 26 26 C 1.52908 * 121.13575 * 209.42926 * 25 10 9 27 27 C 1.53953 * 86.77857 * 209.38323 * 26 25 10 28 28 C 1.52910 * 121.13672 * 100.86446 * 25 10 9 29 29 H 1.09000 * 109.46991 * 60.00084 * 1 2 3 30 30 H 1.09000 * 109.47341 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47269 * 300.00179 * 1 2 3 32 32 H 1.08998 * 109.47552 * 59.99633 * 3 2 1 33 33 H 1.09004 * 109.47502 * 300.00012 * 3 2 1 34 34 H 0.96993 * 119.99505 * 0.02562 * 6 4 3 35 35 H 1.09000 * 113.63776 * 335.23995 * 9 7 6 36 36 H 1.09004 * 113.58173 * 204.39787 * 9 7 6 37 37 H 1.00896 * 111.00309 * 342.05835 * 12 10 9 38 38 H 1.08990 * 109.47358 * 299.99539 * 13 12 10 39 39 H 1.09004 * 109.47457 * 60.00221 * 13 12 10 40 40 H 0.96993 * 119.99587 * 0.02562 * 16 14 13 41 41 H 0.96997 * 119.99955 * 180.02562 * 20 19 17 42 42 H 1.08995 * 113.66324 * 323.84886 * 26 25 10 43 43 H 1.09001 * 113.66466 * 94.91485 * 26 25 10 44 44 H 1.09001 * 113.58025 * 270.12308 * 27 26 25 45 45 H 1.09001 * 113.57693 * 139.34061 * 27 26 25 46 46 H 1.08996 * 113.66826 * 265.09278 * 28 25 10 47 47 H 1.09003 * 113.66077 * 36.05986 * 28 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 8 4.0341 0.0915 0.0015 6 7 4.2765 2.2968 0.0013 7 6 5.7369 2.1811 0.0013 8 1 6.0868 1.2305 0.4038 9 6 6.3878 2.5626 -1.3428 10 6 6.4677 4.0045 -0.8095 11 1 5.5874 4.6051 -1.0384 12 7 7.7262 4.6865 -1.1400 13 6 7.5218 5.6847 -2.1982 14 6 8.8315 6.3624 -2.5092 15 8 9.8364 6.0446 -1.9087 16 7 8.8864 7.3208 -3.4552 17 6 10.0779 7.9369 -3.7385 18 1 10.9725 7.6546 -3.2033 19 6 10.1343 8.9254 -4.7134 20 7 9.0458 9.2693 -5.3643 21 14 11.7577 9.7653 -5.0989 22 1 12.7425 8.7527 -5.5572 23 1 11.5513 10.7741 -6.1690 24 1 12.2700 10.4366 -3.8774 25 6 6.4488 3.3978 0.5939 26 6 5.8553 4.1621 1.7778 27 6 6.8585 3.3989 2.6617 28 6 7.7352 3.2432 1.4059 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.8593 3.1725 0.0017 35 1 5.7217 2.4505 -2.1984 36 1 7.3627 2.1017 -1.5016 37 1 8.4393 4.0225 -1.4022 38 1 7.1454 5.1921 -3.0946 39 1 6.7993 6.4283 -1.8616 40 1 8.0828 7.5746 -3.9356 41 1 9.0853 9.9590 -6.0451 42 1 6.0353 5.2364 1.7394 43 1 4.8141 3.9126 1.9821 44 1 6.4721 2.4540 3.0437 45 1 7.3132 4.0152 3.4373 46 1 8.1957 2.2596 1.3131 47 1 8.4442 4.0585 1.2618 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202300974.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:10 Heat of formation + Delta-G solvation = -92.834596 kcal Electronic energy + Delta-G solvation = -27545.981562 eV Core-core repulsion = 23536.416880 eV Total energy + Delta-G solvation = -4009.564682 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.09605 -40.38148 -39.97676 -38.33472 -36.68670 -36.00477 -35.40821 -33.36606 -33.04802 -29.88258 -28.35799 -26.88261 -26.67868 -26.04636 -25.47260 -23.96918 -22.18541 -21.40402 -21.08711 -19.92513 -19.45610 -18.31857 -17.85806 -17.39688 -17.24186 -16.92470 -16.66463 -16.41285 -16.24866 -15.97533 -15.95132 -15.55653 -15.35238 -15.15125 -14.46111 -14.27021 -14.05491 -13.79431 -13.54384 -13.48626 -13.25141 -13.10384 -13.05304 -12.82302 -12.81683 -12.60413 -12.42327 -12.33208 -12.12465 -11.93598 -11.49419 -11.29561 -11.07467 -10.99590 -10.87756 -10.74879 -10.28476 -10.05457 -10.00243 -9.17086 -8.45866 -5.94242 1.40050 1.41949 1.52471 1.52599 1.76504 2.07564 2.29673 2.93600 3.10622 3.21616 3.37557 3.49087 3.61016 3.67339 3.78404 3.89428 4.01163 4.03336 4.21610 4.29676 4.33818 4.43220 4.51849 4.53524 4.55902 4.59430 4.61319 4.62664 4.77889 4.88752 4.89267 4.92957 5.00747 5.04967 5.13534 5.18079 5.41524 5.48105 5.51037 5.65429 5.94351 6.05543 6.18336 6.42055 6.53695 6.61750 7.13892 7.20575 7.58209 8.13782 8.71210 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.019459 B = 0.002213 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.544795 B =12651.009871 C =13576.024289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.409 6.409 3 C 0.044 3.956 4 C 0.511 3.489 5 O -0.576 6.576 6 N -0.691 5.691 7 C 0.155 3.845 8 H 0.084 0.916 9 C -0.176 4.176 10 C 0.084 3.916 11 H 0.116 0.884 12 N -0.662 5.662 13 C 0.066 3.934 14 C 0.437 3.563 15 O -0.623 6.623 16 N -0.574 5.574 17 C -0.334 4.334 18 H 0.078 0.922 19 C -0.013 4.013 20 N -0.920 5.920 21 Si 0.992 3.008 22 H -0.273 1.273 23 H -0.270 1.270 24 H -0.272 1.272 25 C -0.094 4.094 26 C -0.113 4.113 27 C -0.137 4.137 28 C -0.109 4.109 29 H 0.059 0.941 30 H 0.092 0.908 31 H 0.061 0.939 32 H 0.113 0.887 33 H 0.110 0.890 34 H 0.419 0.581 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.344 0.656 38 H 0.064 0.936 39 H 0.107 0.893 40 H 0.396 0.604 41 H 0.277 0.723 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.068 0.932 46 H 0.060 0.940 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.959 -11.363 11.352 25.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.328 6.328 3 C -0.035 4.035 4 C 0.299 3.701 5 O -0.454 6.454 6 N -0.344 5.344 7 C 0.048 3.952 8 H 0.103 0.897 9 C -0.217 4.217 10 C -0.026 4.026 11 H 0.134 0.866 12 N -0.293 5.293 13 C -0.066 4.066 14 C 0.225 3.775 15 O -0.510 6.510 16 N -0.211 5.211 17 C -0.463 4.463 18 H 0.096 0.904 19 C -0.213 4.213 20 N -0.561 5.561 21 Si 0.815 3.185 22 H -0.198 1.198 23 H -0.195 1.195 24 H -0.198 1.198 25 C -0.096 4.096 26 C -0.150 4.150 27 C -0.175 4.175 28 C -0.147 4.147 29 H 0.077 0.923 30 H 0.110 0.890 31 H 0.079 0.921 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.256 0.744 35 H 0.093 0.907 36 H 0.103 0.897 37 H 0.164 0.836 38 H 0.082 0.918 39 H 0.125 0.875 40 H 0.230 0.770 41 H 0.087 0.913 42 H 0.102 0.898 43 H 0.101 0.899 44 H 0.097 0.903 45 H 0.087 0.913 46 H 0.079 0.921 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -18.921 -11.904 12.094 25.417 hybrid contribution 0.285 0.529 -1.472 1.590 sum -18.637 -11.376 10.622 24.281 Atomic orbital electron populations 1.23027 0.78259 1.04099 1.01710 1.87963 1.22157 1.26886 1.95819 1.22394 0.88712 0.86790 1.05571 1.20974 0.90226 0.83903 0.75026 1.90725 1.75770 1.28649 1.50273 1.45322 1.05315 1.09224 1.74554 1.21257 0.79723 0.98042 0.96141 0.89742 1.24166 1.01560 0.98190 0.97773 1.23026 0.92332 0.91863 0.95405 0.86634 1.59941 1.08535 1.18413 1.42382 1.21576 0.93964 0.96178 0.94898 1.20966 0.91687 0.82902 0.81979 1.90495 1.38701 1.67517 1.54281 1.41930 1.10841 1.33998 1.34354 1.19616 0.89011 1.17878 1.19818 0.90410 1.26019 1.02130 0.97455 0.95705 1.69659 1.29179 1.32064 1.25178 0.85011 0.77475 0.77899 0.78087 1.19822 1.19487 1.19752 1.22920 0.98097 0.94932 0.93603 1.22604 0.99145 0.99298 0.93987 1.22815 0.97639 1.00603 0.96423 1.22451 0.95267 1.01763 0.95182 0.92262 0.88957 0.92053 0.86946 0.87244 0.74369 0.90729 0.89722 0.83623 0.91801 0.87513 0.76968 0.91322 0.89782 0.89915 0.90270 0.91314 0.92135 0.89956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 11.01 113.37 1.25 1.47 16 2 O -0.41 -7.56 10.24 -129.94 -1.33 -8.89 16 3 C 0.04 0.52 6.42 71.24 0.46 0.98 16 4 C 0.51 9.98 7.91 87.66 0.69 10.67 16 5 O -0.58 -17.88 16.10 15.98 0.26 -17.62 16 6 N -0.69 -10.01 4.81 -440.83 -2.12 -12.12 16 7 C 0.15 2.97 4.13 45.35 0.19 3.16 16 8 H 0.08 2.04 7.46 -2.39 -0.02 2.02 16 9 C -0.18 -3.60 7.53 31.30 0.24 -3.36 16 10 C 0.08 1.72 3.96 45.20 0.18 1.90 16 11 H 0.12 1.93 7.88 -2.39 -0.02 1.91 16 12 N -0.66 -19.26 5.44 -494.06 -2.69 -21.95 16 13 C 0.07 2.12 6.02 85.56 0.52 2.64 16 14 C 0.44 20.30 7.82 87.66 0.69 20.99 16 15 O -0.62 -34.07 15.78 -3.07 -0.05 -34.12 16 16 N -0.57 -28.99 5.29 -306.97 -1.62 -30.62 16 17 C -0.33 -18.84 9.68 84.04 0.81 -18.03 16 18 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 19 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 20 N -0.92 -49.19 13.05 21.66 0.28 -48.91 16 21 Si 0.99 42.79 29.55 68.60 2.03 44.81 16 22 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 23 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 24 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 25 C -0.09 -1.76 0.92 -52.31 -0.05 -1.81 16 26 C -0.11 -1.82 7.62 30.89 0.24 -1.58 16 27 C -0.14 -2.47 8.08 31.23 0.25 -2.22 16 28 C -0.11 -2.39 7.44 30.88 0.23 -2.16 16 29 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.42 3.27 8.42 -92.71 -0.78 2.49 16 35 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.08 1.90 7.82 -2.39 -0.02 1.88 16 37 H 0.34 11.06 7.91 -89.70 -0.71 10.35 16 38 H 0.06 1.81 8.14 -2.39 -0.02 1.80 16 39 H 0.11 2.99 8.13 -2.38 -0.02 2.98 16 40 H 0.40 18.92 7.90 -92.71 -0.73 18.19 16 41 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 42 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.08 0.99 7.58 -2.39 -0.02 0.98 16 44 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.08 2.23 7.76 -2.39 -0.02 2.21 16 Total: -1.00 -76.86 391.48 -0.31 -77.17 By element: Atomic # 1 Polarization: 41.06 SS G_CDS: -1.22 Total: 39.84 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: 6.15 Total: 12.41 kcal Atomic # 7 Polarization: -107.45 SS G_CDS: -6.15 Total: -113.60 kcal Atomic # 8 Polarization: -59.52 SS G_CDS: -1.12 Total: -60.64 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Total: -76.86 -0.31 -77.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202300974.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.668 kcal (2) G-P(sol) polarization free energy of solvation -76.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds