Wall clock time and date at job start Fri Apr 10 2020 18:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42895 * 113.99735 * 2 1 4 4 H 1.08998 * 110.78993 * 31.79446 * 3 2 1 5 5 C 1.54939 * 110.72464 * 268.54389 * 3 2 1 6 6 N 1.48528 * 103.23084 * 204.23252 * 5 3 2 7 7 C 1.46898 * 111.00203 * 159.72158 * 6 5 3 8 8 C 1.50707 * 109.46961 * 183.58481 * 7 6 5 9 9 O 1.21288 * 120.00148 * 354.03537 * 8 7 6 10 10 N 1.34778 * 119.99480 * 174.03777 * 8 7 6 11 11 C 1.37100 * 119.99674 * 179.97438 * 10 8 7 12 12 H 1.08004 * 119.99769 * 0.02562 * 11 10 8 13 13 C 1.38946 * 120.00048 * 179.97438 * 11 10 8 14 14 N 1.31414 * 119.99930 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00072 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47001 * 60.00379 * 15 13 11 17 17 H 1.48496 * 109.47201 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47560 * 300.00699 * 15 13 11 19 19 C 1.47904 * 105.81992 * 39.20754 * 6 5 3 20 20 C 1.53994 * 107.05866 * 334.66875 * 19 6 5 21 21 H 1.09001 * 110.30624 * 120.23904 * 20 19 6 22 22 N 1.46495 * 110.31261 * 242.31301 * 20 19 6 23 23 C 1.34780 * 119.99620 * 273.54970 * 22 20 19 24 24 O 1.21278 * 120.00263 * 359.97438 * 23 22 20 25 25 C 1.50697 * 119.99994 * 180.02562 * 23 22 20 26 26 C 1.53783 * 113.61469 * 279.13378 * 25 23 22 27 27 C 1.53950 * 87.01931 * 220.04591 * 26 25 23 28 28 C 1.53774 * 87.11415 * 25.36150 * 27 26 25 29 29 H 1.09003 * 109.46753 * 299.99985 * 1 2 3 30 30 H 1.08995 * 109.47245 * 60.00347 * 1 2 3 31 31 H 1.09003 * 109.46835 * 180.02562 * 1 2 3 32 32 H 1.09000 * 110.66638 * 85.79080 * 5 3 2 33 33 H 1.09000 * 110.66688 * 322.66636 * 5 3 2 34 34 H 1.08998 * 109.46963 * 303.58016 * 7 6 5 35 35 H 1.09000 * 109.47127 * 63.58412 * 7 6 5 36 36 H 0.96996 * 120.00559 * 359.97438 * 10 8 7 37 37 H 0.97002 * 120.00170 * 179.97438 * 14 13 11 38 38 H 1.08994 * 109.91905 * 94.02586 * 19 6 5 39 39 H 1.09006 * 109.91494 * 215.12274 * 19 6 5 40 40 H 0.96995 * 120.00715 * 93.54284 * 22 20 19 41 41 H 1.09006 * 112.84938 * 50.32372 * 25 23 22 42 42 H 1.09000 * 113.61304 * 334.56708 * 26 25 23 43 43 H 1.08997 * 113.61617 * 105.46658 * 26 25 23 44 44 H 1.08996 * 113.54047 * 270.80742 * 27 26 25 45 45 H 1.09002 * 113.66451 * 139.93072 * 27 26 25 46 46 H 1.08998 * 113.61688 * 220.08921 * 28 27 26 47 47 H 1.09001 * 113.61968 * 89.18374 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3763 2.0111 0.5369 5 6 2.2668 1.7914 -1.4487 6 7 3.3558 2.7881 -1.2850 7 6 4.0622 3.0093 -2.5539 8 6 5.2123 3.9570 -2.3299 9 8 5.3588 4.4884 -1.2495 10 7 6.0782 4.2140 -3.3303 11 6 7.1242 5.0766 -3.1268 12 1 7.2546 5.5497 -2.1647 13 6 8.0172 5.3412 -4.1579 14 7 7.8588 4.7651 -5.3284 15 14 9.4420 6.5169 -3.8808 16 1 10.3020 6.0029 -2.7847 17 1 10.2416 6.6281 -5.1272 18 1 8.9150 7.8549 -3.5104 19 6 4.2656 2.2271 -0.2627 20 6 3.4304 1.2720 0.6100 21 1 3.8396 0.2627 0.5646 22 7 3.3996 1.7455 1.9960 23 6 4.3832 1.3971 2.8491 24 8 5.2934 0.6912 2.4695 25 6 4.3513 1.8836 4.2750 26 6 4.8683 3.3217 4.4470 27 6 5.5575 2.8344 5.7344 28 6 5.5618 1.4301 5.1080 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.3738 2.2613 -1.8607 33 1 2.5936 0.9647 -2.0795 34 1 4.4422 2.0589 -2.9286 35 1 3.3744 3.4383 -3.2826 36 1 5.9613 3.7888 -4.1943 37 1 8.4819 4.9501 -6.0484 38 1 5.0735 1.6777 -0.7459 39 1 4.6768 3.0300 0.3492 40 1 2.6715 2.3098 2.2998 41 1 3.3933 1.7029 4.7626 42 1 5.5657 3.6309 3.6685 43 1 4.0782 4.0516 4.6230 44 1 4.9295 2.9149 6.6216 45 1 6.5544 3.2501 5.8812 46 1 5.3307 0.6350 5.8170 47 1 6.4492 1.2210 4.5106 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211747982.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:35:24 Heat of formation + Delta-G solvation = -110.835772 kcal Electronic energy + Delta-G solvation = -28349.388574 eV Core-core repulsion = 24339.043302 eV Total energy + Delta-G solvation = -4010.345272 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 325.183 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.62985 -40.69509 -39.73579 -38.34319 -37.69674 -36.00124 -35.46660 -33.32739 -31.82395 -29.57919 -28.56517 -27.49684 -27.02968 -26.54617 -25.70262 -22.94529 -22.36449 -21.68872 -20.95717 -20.29293 -19.89429 -18.69457 -18.16057 -17.71790 -17.41728 -16.67067 -16.59389 -16.43447 -16.24653 -15.90158 -15.81415 -15.51839 -15.39078 -15.02789 -14.83106 -14.49432 -13.95368 -13.83951 -13.51278 -13.43379 -13.38109 -13.19933 -13.08575 -12.96769 -12.87973 -12.56137 -12.46042 -12.43153 -12.15870 -12.14186 -11.80808 -11.50875 -11.45241 -11.30414 -10.89736 -10.63477 -10.34932 -10.17525 -10.03906 -9.48952 -8.49137 -5.98061 1.37226 1.38924 1.50089 1.56793 2.00725 2.05188 2.25091 2.47639 2.94282 3.17013 3.24343 3.49133 3.53536 3.55033 3.67586 3.80764 3.90732 3.91438 4.11503 4.18787 4.22365 4.28245 4.38937 4.47490 4.52139 4.58800 4.64422 4.68912 4.73575 4.79000 4.80055 4.84785 4.91680 4.95561 5.02039 5.08059 5.17461 5.37591 5.40122 5.53146 5.65817 5.75166 6.00309 6.19916 6.50255 6.57035 7.09605 7.22474 7.52191 8.07891 8.68221 Molecular weight = 325.18amu Principal moments of inertia in cm(-1) A = 0.009742 B = 0.003523 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2873.587601 B = 7945.379114 C =10362.396975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.397 6.397 3 C 0.097 3.903 4 H 0.108 0.892 5 C 0.014 3.986 6 N -0.496 5.496 7 C 0.047 3.953 8 C 0.438 3.562 9 O -0.615 6.615 10 N -0.573 5.573 11 C -0.335 4.335 12 H 0.078 0.922 13 C -0.012 4.012 14 N -0.920 5.920 15 Si 0.992 3.008 16 H -0.275 1.275 17 H -0.268 1.268 18 H -0.269 1.269 19 C 0.049 3.951 20 C 0.143 3.857 21 H 0.080 0.920 22 N -0.704 5.704 23 C 0.515 3.485 24 O -0.589 6.589 25 C -0.129 4.129 26 C -0.127 4.127 27 C -0.129 4.129 28 C -0.127 4.127 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.097 0.903 32 H 0.116 0.884 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.122 0.878 36 H 0.396 0.604 37 H 0.278 0.722 38 H 0.018 0.982 39 H 0.068 0.932 40 H 0.417 0.583 41 H 0.151 0.849 42 H 0.054 0.946 43 H 0.100 0.900 44 H 0.112 0.888 45 H 0.068 0.932 46 H 0.087 0.913 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.308 -7.579 15.532 24.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.315 6.315 3 C 0.038 3.962 4 H 0.126 0.874 5 C -0.114 4.114 6 N -0.221 5.221 7 C -0.085 4.085 8 C 0.225 3.775 9 O -0.501 6.501 10 N -0.210 5.210 11 C -0.464 4.464 12 H 0.096 0.904 13 C -0.212 4.212 14 N -0.561 5.561 15 Si 0.816 3.184 16 H -0.200 1.200 17 H -0.193 1.193 18 H -0.194 1.194 19 C -0.080 4.080 20 C 0.036 3.964 21 H 0.098 0.902 22 N -0.356 5.356 23 C 0.303 3.697 24 O -0.469 6.469 25 C -0.150 4.150 26 C -0.165 4.165 27 C -0.166 4.166 28 C -0.164 4.164 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.115 0.885 32 H 0.134 0.866 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.140 0.860 36 H 0.230 0.770 37 H 0.088 0.912 38 H 0.037 0.963 39 H 0.086 0.914 40 H 0.254 0.746 41 H 0.168 0.832 42 H 0.073 0.927 43 H 0.118 0.882 44 H 0.130 0.870 45 H 0.087 0.913 46 H 0.106 0.894 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -16.568 -7.385 15.948 24.153 hybrid contribution 1.070 -0.074 -1.150 1.573 sum -15.499 -7.459 14.797 22.689 Atomic orbital electron populations 1.23064 0.78613 1.04110 1.01530 1.87935 1.22240 1.26375 1.94940 1.23051 0.92567 0.85601 0.94997 0.87432 1.23839 0.96117 0.94185 0.97280 1.64521 1.09925 1.41534 1.06164 1.22027 0.94947 0.98103 0.93401 1.20712 0.85600 0.86402 0.84774 1.90481 1.76736 1.56145 1.26705 1.41911 1.24618 1.41297 1.13199 1.19615 1.04936 1.22580 0.99269 0.90414 1.26039 1.01179 0.99619 0.94349 1.69666 1.39161 1.44151 1.03125 0.85003 0.77356 0.78235 0.77841 1.19995 1.19276 1.19423 1.23000 0.94135 0.96319 0.94557 1.21621 0.95763 0.97235 0.81761 0.90201 1.45891 1.27177 1.52866 1.09676 1.21360 0.80630 0.78672 0.89035 1.90682 1.36640 1.39888 1.79685 1.22955 1.03036 0.98917 0.90071 1.22859 1.00847 0.94309 0.98466 1.22863 1.01704 0.94755 0.97253 1.22797 0.96706 0.98718 0.98223 0.92379 0.92512 0.88462 0.86570 0.92346 0.91745 0.85996 0.77026 0.91234 0.96325 0.91366 0.74579 0.83172 0.92704 0.88184 0.86971 0.91311 0.89439 0.92095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.88 113.37 1.23 1.51 16 2 O -0.40 -8.22 10.44 -148.98 -1.56 -9.78 16 3 C 0.10 2.07 3.21 31.80 0.10 2.17 16 4 H 0.11 1.76 7.48 -2.39 -0.02 1.74 16 5 C 0.01 0.32 6.28 86.65 0.54 0.87 16 6 N -0.50 -16.33 5.12 -887.57 -4.54 -20.87 16 7 C 0.05 1.68 5.30 85.56 0.45 2.13 16 8 C 0.44 21.62 7.39 87.66 0.65 22.26 16 9 O -0.61 -34.85 14.10 -3.05 -0.04 -34.89 16 10 N -0.57 -30.40 5.29 -306.98 -1.62 -32.03 16 11 C -0.33 -19.55 9.68 84.04 0.81 -18.73 16 12 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 13 C -0.01 -0.66 5.50 84.92 0.47 -0.19 16 14 N -0.92 -50.76 13.05 21.66 0.28 -50.48 16 15 Si 0.99 44.02 29.55 68.60 2.03 46.04 16 16 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 17 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 18 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 19 C 0.05 1.83 5.18 86.45 0.45 2.28 16 20 C 0.14 4.12 3.06 45.87 0.14 4.26 16 21 H 0.08 2.70 7.58 -2.39 -0.02 2.68 16 22 N -0.70 -17.22 5.03 -438.37 -2.21 -19.43 16 23 C 0.51 14.61 7.35 87.66 0.64 15.25 16 24 O -0.59 -22.91 15.61 -3.02 -0.05 -22.95 16 25 C -0.13 -2.44 4.14 -11.01 -0.05 -2.49 16 26 C -0.13 -2.37 7.64 31.18 0.24 -2.13 16 27 C -0.13 -1.98 8.09 31.18 0.25 -1.72 16 28 C -0.13 -2.53 7.40 31.12 0.23 -2.30 16 29 H 0.06 0.53 8.11 -2.39 -0.02 0.51 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.06 1.38 7.95 -2.39 -0.02 1.36 16 34 H 0.06 2.16 8.00 -2.39 -0.02 2.14 16 35 H 0.12 3.72 8.14 -2.39 -0.02 3.70 16 36 H 0.40 19.95 7.90 -92.71 -0.73 19.22 16 37 H 0.28 14.37 8.31 -92.71 -0.77 13.60 16 38 H 0.02 0.78 7.71 -2.39 -0.02 0.76 16 39 H 0.07 3.03 6.81 -2.38 -0.02 3.01 16 40 H 0.42 7.09 8.35 -92.71 -0.77 6.31 16 41 H 0.15 1.68 8.14 -2.38 -0.02 1.66 16 42 H 0.05 1.41 8.09 -2.39 -0.02 1.39 16 43 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.06 1.65 7.45 -2.39 -0.02 1.63 16 Total: -1.00 -79.06 384.78 -2.05 -81.12 By element: Atomic # 1 Polarization: 40.63 SS G_CDS: -0.52 Total: 40.11 kcal Atomic # 6 Polarization: 16.99 SS G_CDS: 6.17 Total: 23.16 kcal Atomic # 7 Polarization: -114.72 SS G_CDS: -8.09 Total: -122.80 kcal Atomic # 8 Polarization: -65.98 SS G_CDS: -1.65 Total: -67.63 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -79.06 -2.05 -81.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211747982.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.720 kcal (2) G-P(sol) polarization free energy of solvation -79.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds